BAC Information

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BAC

Clone NameB6Ng01-088B05
Chromosome4 (Build37)
Map Location 48,347,219 - 48,495,470
singlet/doubletdoublet
Overlap geneInvs, Tex10
Upstream geneTgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3, Stx17, Txndc4
Downstream gene5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088B05.bB6Ng01-088B05.g
ACCDH901032DH901033
length1,2091,130
definitionDH901032|Mus musculus domesticus DNA, BAC clone: B6Ng01-088B05, 5' end.DH901033|Mus musculus domesticus DNA, BAC clone: B6Ng01-088B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,347,219 - 48,348,447)(48,494,312 - 48,495,470)
sequence
gaattctgttgtttccatgaccttgttctctccttaagccagtatgactt
tggtgtttcctctaacggtcaaggacaattctagcatttgctgtctgtct
agcagctacgctggtcctatagggatcttcgtgctaaactcagtcattct
cgttagttttttttttacagaggtctctttgccaataaacctgccatatc
ctatctaatagccctcttcacctcaattgttcttgttattctcccacctt
aggtttacctcggcactgaacactacctaaactaaaatttggtctgttta
cttcccgtgtgtatgctcttctccttccattggattgtagcaagtgcccg
tgaacttatggagtacgttgtactcactacttcatcttgttgactagaac
aagtatacagttgatactgaaacatatttgttgaatgaataaataatact
tccacagttgcagctttattattttccccagtagtttagcatctttacat
tatacacatattttccataaaatatataatggcattctagttgtctaata
acacaacatttcctaacgaagtgaggtctctgctttgctagctggatttt
ctcatacaaacctccatccccaccccagtgactcctgattgttcttcata
gaatacttcctctcttgagaccacaaatttctttttctttgctctctgcc
accctatgctttcctggttagatagccacagactgtccctttgtgctgcc
tttccctgggaagtgaatcagtgcagcctagtggcaagcagaggactgaa
catttgcatcttcagaatgtttgtattgacaaatggcagtcagttattga
catttatgtcccttggtgatacttcaattggcttatctttgctggtcaaa
tgccttaattgttctggcctttattcagtcaaagtcagagctagagcaga
gggaaggggaaggagccagtctacagggcatcagcttgagcaggaggctg
ctggcaacgatcagctgtcatatgtatgatttgtcatttttataccattt
attagcctttacttgttgtgccatttggcctcagggcagataagggctgt
tatttgttaggttgccttctgttagaagcagcctcgcacgggaggtggta
gcgctggacaatataccatagtcgtctgtcactgaggaggagcagtctgg
cctttcatc
gaattcaccagagcagaaggagaagggagtaggaaagtcagatataatag
aataattatgcacaccaaggcctcctgaaaatgaaatcacacacaaatga
aatctatacagctgttttccagggctaagttggagaaatgggcttctttt
ttacaaagagctgccacaggctattgagatgtctccatcctggcctgctg
caggcagtcccttatttctaatggcggtcccctggagagatgtgtctcct
gcttctcagggtcccagacaccatccttttatttttttaaatttattttt
atttatttatttattttttttacaaagagctaccaagggcttttgagatg
tctccatctaggcctgctgcagcagtctctgtcatggtatgctgtcccct
gcagtatgacattgatttatttgtgtgttttgatttgcaaacgtatctct
taataaagtcttaactttctatgagcattgtctgaaattaccacacactg
ttaccattgaaatcttgaaatctgtcaatcatatacctctacagatgtga
ctaataaaatgaaatacaaataaaaactaacacttttttttttttttttg
gtttttcgagacagggtctctctgtacagccctggctgtcctggaactca
ctttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcct
cccaagtgctgggattaaaggcgtgtgccaccaccgcctggcaacacctt
cttttttgtttgtttgtttgtttgtttgtttctggcaacaccttgttaaa
aacctgagtagaaaggcacataatctaaaaatatatattacatgaactat
ctaaactgcccttagatgtgactcaaggccctcatgacagacacctgcaa
ttgtcactgcatggacatgggtgacaatagcagcaggttcatggttcatc
cattctttgactttctgtggagagctgtgcttgagcagaattgctctctg
acaatgagaccctgctgctcatttgattagtaacagtggagagtacctca
gttagaaagactcaatgagccactgtgtgactcagcacgctgtttggagc
tgagtagtcaatcttcactgagaatgagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_48347219_48348447
seq2: B6Ng01-088B05.b_48_1256

seq1  GAATTCTGTTGTTTCCATGACCTTGTTCTCTCCTTAAGCCAGTATGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGTTTCCATGACCTTGTTCTCTCCTTAAGCCAGTATGACTT  50

seq1  TGGTGTTTCCTCTAACGGTCAAGGACAATTCTAGCATTTGCTGTCTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTCCTCTAACGGTCAAGGACAATTCTAGCATTTGCTGTCTGTCT  100

seq1  AGCAGCTACGCTGGTCCTATAGGGATCTTCGTGCTAAACTCAGTCATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTACGCTGGTCCTATAGGGATCTTCGTGCTAAACTCAGTCATTCT  150

seq1  CGTTAGTTTTTTTTTTACAGAGGTCTCTTTGCCAATAAACCTGCCATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGTTTTTTTTTTACAGAGGTCTCTTTGCCAATAAACCTGCCATATC  200

seq1  CTATCTAATAGCCCTCTTCACCTCAATTGTTCTTGTTATTCTCCCACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAATAGCCCTCTTCACCTCAATTGTTCTTGTTATTCTCCCACCTT  250

seq1  AGGTTTACCTCGGCACTGAACACTACCTAAACTAAAATTTGGTCTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTACCTCGGCACTGAACACTACCTAAACTAAAATTTGGTCTGTTTA  300

seq1  CTTCCCGTGTGTATGCTCTTCTCCTTCCATTGGATTGTAGCAAGTGCCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCGTGTGTATGCTCTTCTCCTTCCATTGGATTGTAGCAAGTGCCCG  350

seq1  TGAACTTATGGAGTACGTTGTACTCACTACTTCATCTTGTTGACTAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTATGGAGTACGTTGTACTCACTACTTCATCTTGTTGACTAGAAC  400

seq1  AAGTATACAGTTGATACTGAAACATATTTGTTGAATGAATAAATAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATACAGTTGATACTGAAACATATTTGTTGAATGAATAAATAATACT  450

seq1  TCCACAGTTGCAGCTTTATTATTTTCCCCAGTAGTTTAGCATCTTTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTTGCAGCTTTATTATTTTCCCCAGTAGTTTAGCATCTTTACAT  500

seq1  TATACACATATTTTCCATAAAATATATAATGGCATTCTAGTTGTCTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATATTTTCCATAAAATATATAATGGCATTCTAGTTGTCTAATA  550

seq1  ACACAACATTTCCTAACGAAGTGAGGTCTCTGCTTTGCTAGCTGGATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACATTTCCTAACGAAGTGAGGTCTCTGCTTTGCTAGCTGGATTTT  600

seq1  CTCATACAAACCTCCATCCCCACCCCAGTGACTCCTGATTGTTCTTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACAAACCTCCATCCCCACCCCAGTGACTCCTGATTGTTCTTCATA  650

seq1  GAATACTTCCTCTCTTGAGACCACAAATTTCTTTTTCTTTGCTCTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTCCTCTCTTGAGACCACAAATTTCTTTTTCTTTGCTCTCTGCC  700

seq1  ACCCTATGCTTTCCTGGTTAGATAGCCACAGACTGTCCCTTTGTGCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATGCTTTCCTGGTTAGATAGCCACAGACTGTCCCTTTGTGCTGCC  750

seq1  TTTCCCTGGGAAGTGAATCAGTGCAGCCTAGTGGCAAGCAGAGGACTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGGGAAGTGAATCAGTGCAGCCTAGTGGCAAGCAGAGGACTGAA  800

seq1  CATTTGCATCTTCAGAATGTTTGTATTGACAAATGGCAGTCAGTTATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCATCTTCAGAATGTTTGTATTGACAAATGGCAGTCAGTTATTGA  850

seq1  CATTTATGTCCCTTGGTGATACTTCAATTGGCTTATCTTTGCTGGTCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGTCCCTTGGTGATACTTCAATTGGCTTATCTTTGCTGGTCAAA  900

seq1  TGCCTTAATTGTTCTGGCCTTTAATTCAGTCAAAGTCAGAGCTAGAGCAG  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCCTTAATTGTTCTGGCCTTT-ATTCAGTCAAAGTCAGAGCTAGAGCAG  949

seq1  AGGGGAAGGGGAAGGAGCCAGTCTAACAGGGCATCAAGCTTGAGCAGGGA  1000
      | |||||||||||||||||||||| |||||||||| |||||||||| |||
seq2  A-GGGAAGGGGAAGGAGCCAGTCT-ACAGGGCATC-AGCTTGAGCA-GGA  995

seq1  GGCTGCTGGCAACGATCAGCCTGTCATAATGTTATGATTTGTTCATTTTT  1050
      ||||||||||||||||||| ||||||| ||| ||||||||| ||||||||
seq2  GGCTGCTGGCAACGATCAG-CTGTCAT-ATG-TATGATTTG-TCATTTTT  1041

seq1  ATACCATTTATTAGCCTTTACTTGTTGTGCCATTTGGCCTCCAGGGCAGA  1100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATACCATTTATTAGCCTTTACTTGTTGTGCCATTTGGCCT-CAGGGCAGA  1090

seq1  TAAAGTGCTGTCTAATTTGGTAGGTTTGCTTCTGTCAG-AGCAGCCTCGA  1149
      | ||| ||||  | ||||| ||||||  ||||||| || |||||||||| 
seq2  T-AAGGGCTG--TTATTTGTTAGGTTGCCTTCTGTTAGAAGCAGCCTCG-  1136

seq1  CAGGGAAGGTGTTAGCCGCAGTGACAAATAATCAATAGCCGTCCTTGTCA  1199
      || || ||||| ||| ||| | ||| ||||  | |||| ||||  |||||
seq2  CACGGGAGGTGGTAG-CGCTG-GAC-AATATACCATAGTCGTC--TGTCA  1181

seq1  -TGAGGAACGGGAGCAGTCGGGCCTTTCATC  1229
       ||||||   ||||||||| |||||||||||
seq2  CTGAGGA---GGAGCAGTCTGGCCTTTCATC  1209

seq1: chr4_48494312_48495470
seq2: B6Ng01-088B05.g_70_1199 (reverse)

seq1  TCCTCATTCTCAAGTGGAAGGAATTGTACCTAAACTCAGCTTCCAACAGG  50
      ||||||||||| ||| ||||  |||| ||    |||||||| | ||||| 
seq2  TCCTCATTCTC-AGT-GAAG--ATTG-AC---TACTCAGCTCCAAACAGC  42

seq1  CTGTGCCTGAGTCCACCAACAGGTGGCATCCACTCTGAGTCTTTTCCTAA  100
       ||   |||||| |||  ||| ||||    | |  |||||||||  ||||
seq2  GTG---CTGAGT-CAC--ACA-GTGG----CTCATTGAGTCTTT--CTAA  79

seq1  ACCTTGAGGGTTACTCT-CACTGTTACTAATCAAAATGAAGCAGCAGGGT  149
          |||||  |||||| |||||||||||||| ||||| |||||||||||
seq2  ---CTGAGG--TACTCTCCACTGTTACTAATC-AAATG-AGCAGCAGGGT  122

seq1  CTCATTGTCAGAGAGCAATTCTGGCTCAAGCACAGCTCTCCACAGAAAGT  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCATTGTCAGAGAGCAATTCT-GCTCAAGCACAGCTCTCCACAGAAAGT  171

seq1  CAAAGAATGGATGAACCATGAACCTGCTGCCTATTGTCACCCATGTCCAT  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAAGAATGGATGAACCATGAACCTGCTG-CTATTGTCACCCATGTCCAT  220

seq1  GCAGTGACAATTGCAGGTGTCTGTCATGAGGGCCTTGAGTCACATCTAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGACAATTGCAGGTGTCTGTCATGAGGGCCTTGAGTCACATCTAAG  270

seq1  GGCAGTTTAGATAGTTCATGTAATATATATTTTTAGATTATGTGCCTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTTAGATAGTTCATGTAATATATATTTTTAGATTATGTGCCTTTC  320

seq1  TACTCAGGTTTTTAACAAGGTGTTGCCAGAAACAAACAAACAAACAAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGGTTTTTAACAAGGTGTTGCCAGAAACAAACAAACAAACAAACA  370

seq1  AACAAAAAAGAAGGTGTTGCCAGGCGGTGGTGGCACACGCCTTTAATCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAGAAGGTGTTGCCAGGCGGTGGTGGCACACGCCTTTAATCCC  420

seq1  AGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG  470

seq1  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGTACAGAGAGACCCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGTACAGAGAGACCCTGT  520

seq1  CTCGAAAAACCAAAAAAAAAAAAAAAAGTGTTAGTTTTTATTTGTATTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAAAACCAAAAAAAAAAAAAAAAGTGTTAGTTTTTATTTGTATTTC  570

seq1  ATTTTATTAGTCACATCTGTAGAGGTATATGATTGACAGATTTCAAGATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTAGTCACATCTGTAGAGGTATATGATTGACAGATTTCAAGATT  620

seq1  TCAATGGTAACAGTGTGTGGTAATTTCAGACAATGCTCATAGAAAGTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGTAACAGTGTGTGGTAATTTCAGACAATGCTCATAGAAAGTTAA  670

seq1  GACTTTATTAAGAGATACGTTTGCAAATCAAAACACACAAATAAATCAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATTAAGAGATACGTTTGCAAATCAAAACACACAAATAAATCAAT  720

seq1  GTCATACTGCAGGGGACAGCATACCATGACAGAGACTGCTGCAGCAGGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACTGCAGGGGACAGCATACCATGACAGAGACTGCTGCAGCAGGCC  770

seq1  TAGATGGAGACATCTCAAAAGCCCTTGGTAGCTCTTTGTAAAAAAAATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGAGACATCTCAAAAGCCCTTGGTAGCTCTTTGTAAAAAAAATAA  820

seq1  ATAAATAAATAAAAATAAATTTAAAAAAATAAAAGGATGGTGTCTGGGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAAAATAAATTTAAAAAAATAAAAGGATGGTGTCTGGGAC  870

seq1  CCTGAGAAGCAGGAGACACATCTCTCCAGGGGACCGCCATTAGAAATAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAAGCAGGAGACACATCTCTCCAGGGGACCGCCATTAGAAATAAG  920

seq1  GGACTGCCTGCAGCAGGCCAGGATGGAGACATCTCAATAGCCTGTGGCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCCTGCAGCAGGCCAGGATGGAGACATCTCAATAGCCTGTGGCAG  970

seq1  CTCTTTGTAAAAAAGAAGCCCATTTCTCCAACTTAGCCCTGGAAAACAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTAAAAAAGAAGCCCATTTCTCCAACTTAGCCCTGGAAAACAGC  1020

seq1  TGTATAGATTTCATTTGTGTGTGATTTCATTTTCAGGAGGCCTTGGTGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGATTTCATTTGTGTGTGATTTCATTTTCAGGAGGCCTTGGTGTG  1070

seq1  CATAATTATTCTATTATATCTGACTTTCCTACTCCCTTCTCCTTCTGCTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTATTCTATTATATCTGACTTTCCTACTCCCTTCTCCTTCTGCTC  1120

seq1  TGGTGAATTC  1159
      ||||||||||
seq2  TGGTGAATTC  1130