BAC Information

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BAC

Clone NameB6Ng01-088D08
Chromosome4 (Build37)
Map Location 8,297,707 - 8,489,805
singlet/doubletdoublet
Overlap geneLOC100039505, LOC100039478, Rab2
Upstream geneCar8, LOC100039494
Downstream geneEG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik, Asph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088D08.bB6Ng01-088D08.g
ACCDH901128DH901129
length1,183650
definitionDH901128|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D08, 5' end.DH901129|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,488,610 - 8,489,805)(8,297,707 - 8,298,356)
sequence
gaattcaggaggtgaaagcagaaggcttactgcaaattcaagctctgtct
gtttattcttggagatccatctttaacagtaacataacaaacatacccaa
ctcccagacacaactaggaatcagtgaaagaatgtcactaaacaaaagaa
ctgagatttccagttactccttttttctatgtttaactcaatcctagcag
gttgcagcataaaagaatcatccagctagattccttacctatcagatccc
cacccacttctctctcctctcccccctccttccctccccctcctctcctc
ccttctcttcccctccctctcccctcctgatcctctcccctcctgatcct
ctccccgtcccctctccttccctctccctctcctccccgctcccctctct
cagtgagtctcaaccttcctaatgttaaaacattaaatctttaaaatggt
tccttaaattatggtaaccctcaactacaaaattattttattgttatttc
ataactgtaattttgctactgttatgaatcataatgtaaatatctgatat
gcagggtatctgatgtatgaaccctgtgaaaggacagttcaacccccaaa
ggagttgcaaactacagagtgagaaccactgctctagattatctatccac
ccaccctccactcacccacccgtccagctactgagagatcatttttaaaa
gagacatcttgctacatgggcctggctactctagaacttgctatgatgag
cacactaaccctgaacttggggtgaacacctcctgtttttgtttcccaag
tactgggttcatgggtttgcaggatcatgccaccatgcctgactaccgat
gtaattttcaaacaaattgtatcgatgtaaaacgtttagattttactcat
tttaaattttaagctttgtgtatcgataaaagcagtattagcactatgta
aactaaccatactacacctagtgactatttgttactagtacttgctcatt
tacacttcatagcagaaaaacggtctggttatgacaacaggcaagcatga
agacggcacactgagaggtactgctgtcttcccacaccataaggaaaggg
aaatggaagtgtgaaaagttgcccacatacctgttggactgttggaattt
cagtaagcaccccaatgtggtgcagttgtctct

gaattcaaagccaacatgggcaatttatgtcataaacaagaaataacaaa
aggcctgacacctagcatgcacagggccctaatttcaatgctcctatcca
gaggtggctcagggtaaggagaagaaagaacatgctcacaagggtttaaa
aaaaaaagtcttcagataagcaagtcccttgtgtaaatgtgataatgttt
gtatataactcaacagaccctcctatgtggccggtcgagtctgttctcac
tccacgacagggcacagcctcttggggaggcagaatgtggggactttgac
tgcactgcttcctccagggggatcctggactgtagggaagcaatgaggca
ccgctccaggggtgggaaagcacagtctgagacacgggaaaggcagagct
ggttcaggggtcccctggcctgcggtgaggctggggctgtggggttctct
gactctgggacatctgggagccaccgagagtcacagaagagcagagaaca
gagtcggcagcccacaggctggggactgtgtctaggctgaaggagaagtt
ctggcttgtcccgtgggtaattgtccttagcttggaggaggcaggtttgg
tggtggttatggctgggagcccagagagaccttctccaggagaattagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8488610_8489805
seq2: B6Ng01-088D08.b_46_1228 (reverse)

seq1  AGAGACAAAACTGCACCAC-TTTGGGTGCTTACTGGAAATTACAACAAGT  49
      ||||||  ||||||||||| || ||||||||||| |||||| |||| |||
seq2  AGAGAC--AACTGCACCACATTGGGGTGCTTACT-GAAATTCCAAC-AGT  46

seq1  CTACCA-GTATGTGGGCAAACTGTTTCACCACTTCCCATTTCACCTTTCC  98
      | | || |||||||||| |||| ||||| ||||| ||||||| |||||||
seq2  CCAACAGGTATGTGGGC-AACT-TTTCA-CACTT-CCATTTC-CCTTTCC  91

seq1  -TATGTGTGTGTGAAGACAGCAGTACCTCTCAGTGTGGCCGTACTTCATG  147
       |||| ||||| |||||||||||||||||||||||| ||||| |||||||
seq2  TTATG-GTGTGGGAAGACAGCAGTACCTCTCAGTGT-GCCGT-CTTCATG  138

seq1  CTTGCCTGTTGTCATTAACCAGGACCGTTTGTCTGCTATGAAGTGTAAAT  197
      |||||||||||||| |||||| |||||||| |||||||||||||||||||
seq2  CTTGCCTGTTGTCA-TAACCA-GACCGTTTTTCTGCTATGAAGTGTAAAT  186

seq1  GAGCAGGTACTAGTAACAAATAGTCACTAGGTGTAGTTATGGTTAGTTTA  247
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGCAAGTACTAGTAACAAATAGTCACTAGGTGTAG-TATGGTTAGTTTA  235

seq1  CATAGTGCTAATACTGCTTTTTATCGATACACAAAGCTTAAAATTTAAAA  297
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATAGTGCTAATACTGC-TTTTATCGATACACAAAGCTTAAAATTTAAAA  284

seq1  TGAGTAAAATCTAAACGTTTTACATCGATACAATTTGTTTGAAAATTACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAAATCTAAACGTTTTACATCGATACAATTTGTTTGAAAATTACA  334

seq1  TCGGTAGTCAGGCATGGTGGCCTGATCCTGCAAACCCATGAACCCAGTAC  397
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCGGTAGTCAGGCATGGTGGCATGATCCTGCAAACCCATGAACCCAGTAC  384

seq1  TTGGGAAACAAAAACAGGAGGTGTTCACCCCAAGTTCAGGGTTAGTGTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAACAAAAACAGGAGGTGTTCACCCCAAGTTCAGGGTTAGTGTGC  434

seq1  TCATCATAGCAAGTTCTAGGGTAGCCAGGCCCATGTAGCAAGATGTCTCT  497
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCATCATAGCAAGTTCTAGAGTAGCCAGGCCCATGTAGCAAGATGTCTCT  484

seq1  TTTAAAAATGATCTCTCAGTAGCTGGACGGGTGGGTGAGTGGAGGGTGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATGATCTCTCAGTAGCTGGACGGGTGGGTGAGTGGAGGGTGGG  534

seq1  TGGATAGATAATCTAGAGCAGTGGTTCTCACTCTGTAGTTTGCAACTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGATAATCTAGAGCAGTGGTTCTCACTCTGTAGTTTGCAACTCCT  584

seq1  TTGGGGGTTGAACTGTCCTTTCACAGGGTTCATACATCAGATACCCTGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTTGAACTGTCCTTTCACAGGGTTCATACATCAGATACCCTGCA  634

seq1  TATCAGATATTTACATTATGATTCATAACAGTAGCAAAATTACAGTTATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATATTTACATTATGATTCATAACAGTAGCAAAATTACAGTTATG  684

seq1  AAATAACAATAAAATAATTTTGTAGTTGAGGGTTACCATAATTTAAGGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAATAAAATAATTTTGTAGTTGAGGGTTACCATAATTTAAGGAA  734

seq1  CCATTTTAAAGATTTAATGTTTTAACATTAGGAAGGTTGAGACTCACTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAAAGATTTAATGTTTTAACATTAGGAAGGTTGAGACTCACTGA  784

seq1  GAGAGGGGAGCGGGGAGGAGAGGGAGAGGGAAGGAGAGGGGACGGGGAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGAGCGGGGAGGAGAGGGAGAGGGAAGGAGAGGGGACGGGGAGA  834

seq1  GGATCAGGAGGGGAGAGGATCAGGAGGGGAGAGGGAGGGGAAGAGAAGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGGAGGGGAGAGGATCAGGAGGGGAGAGGGAGGGGAAGAGAAGGG  884

seq1  AGGAGAGGAGGGGGAGGGAAGGAGGGGGGAGAGGAGAGAGAAGTGGGTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGAGGGGGAGGGAAGGAGGGGGGAGAGGAGAGAGAAGTGGGTGG  934

seq1  GGATCTGATAGGTAAGGAATCTAGCTGGATGATTCTTTTATGCTGCAACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGATAGGTAAGGAATCTAGCTGGATGATTCTTTTATGCTGCAACC  984

seq1  TGCTAGGATTGAGTTAAACATAGAAAAAAGGAGTAACTGGAAATCTCAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGATTGAGTTAAACATAGAAAAAAGGAGTAACTGGAAATCTCAGT  1034

seq1  TCTTTTGTTTAGTGACATTCTTTCACTGATTCCTAGTTGTGTCTGGGAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTTAGTGACATTCTTTCACTGATTCCTAGTTGTGTCTGGGAGT  1084

seq1  TGGGTATGTTTGTTATGTTACTGTTAAAGATGGATCTCCAAGAATAAACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGTTTGTTATGTTACTGTTAAAGATGGATCTCCAAGAATAAACA  1134

seq1  GACAGAGCTTGAATTTGCAGTAAGCCTTCTGCTTTCACCTCCTGAATTC  1196
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCTTGAATTTGCAGTAAGCCTTCTGCTTTCACCTCCTGAATTC  1183


seq1: chr4_8297707_8298356
seq2: B6Ng01-088D08.g_69_718

seq1  GAATTCAAAGCCAACATGGGCAATTTATGTCATAAACAAGAAATAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCAACATGGGCAATTTATGTCATAAACAAGAAATAACAAA  50

seq1  AGGCCTGACACCTAGCATGCACAGGGCCCTAATTTCAATGCTCCTATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGACACCTAGCATGCACAGGGCCCTAATTTCAATGCTCCTATCCA  100

seq1  GAGGTGGCTCAGGGTAAGGAGAAGAAAGAACATGCTCACAAGGGTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGCTCAGGGTAAGGAGAAGAAAGAACATGCTCACAAGGGTTTAAA  150

seq1  AAAAAAAGTCTTCAGATAAGCAAGTCCCTTGTGTAAATGTGATAATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTCTTCAGATAAGCAAGTCCCTTGTGTAAATGTGATAATGTTT  200

seq1  GTATATAACTCAACAGACCCTCCTATGTGGCCGGTCGAGTCTGTTCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAACTCAACAGACCCTCCTATGTGGCCGGTCGAGTCTGTTCTCAC  250

seq1  TCCACGACAGGGCACAGCCTCTTGGGGAGGCAGAATGTGGGGACTTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGACAGGGCACAGCCTCTTGGGGAGGCAGAATGTGGGGACTTTGAC  300

seq1  TGCACTGCTTCCTCCAGGGGGATCCTGGACTGTAGGGAAGCAATGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCTTCCTCCAGGGGGATCCTGGACTGTAGGGAAGCAATGAGGCA  350

seq1  CCGCTCCAGGGGTGGGAAAGCACAGTCTGAGACACGGGAAAGGCAGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCCAGGGGTGGGAAAGCACAGTCTGAGACACGGGAAAGGCAGAGCT  400

seq1  GGTTCAGGGGTCCCCTGGCCTGCGGTGAGGCTGGGGCTGTGGGGTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGGGGTCCCCTGGCCTGCGGTGAGGCTGGGGCTGTGGGGTTCTCT  450

seq1  GACTCTGGGACATCTGGGAGCCACCGAGAGTCACAGAAGAGCAGAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGGACATCTGGGAGCCACCGAGAGTCACAGAAGAGCAGAGAACA  500

seq1  GAGTCGGCAGCCCACAGGCTGGGGACTGTGTCTAGGCTGAAGGAGAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGGCAGCCCACAGGCTGGGGACTGTGTCTAGGCTGAAGGAGAAGTT  550

seq1  CTGGCTTGTCCCGTGGGTAATTGTCCTTAGCTTGGAGGAGGCAGGTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGTCCCGTGGGTAATTGTCCTTAGCTTGGAGGAGGCAGGTTTGG  600

seq1  TGGTGGTTATGGCTGGGAGCCCAGAGAGACCTTCTCCAGGAGAATTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTATGGCTGGGAGCCCAGAGAGACCTTCTCCAGGAGAATTAGAC  650


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