BAC Information

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BAC

Clone NameB6Ng01-089F11
Chromosome4 (Build37)
Map Location 11,801,264 - 11,941,744
singlet/doubletdoublet
Overlap genePpm2c
Upstream gene2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17
Downstream geneTmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592, OTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089F11.bB6Ng01-089F11.g
ACCDH901945DH901946
length1,172934
definitionDH901945|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F11, 5' end.DH901946|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,801,264 - 11,802,456)(11,941,046 - 11,941,744)
sequence
gaattcagttttcatccactttatgacttaagtctcctttttagaaaagc
tttattttatttgttattattgtatgtctattatgggggcacgtgggtgt
ccagtgtcatgggctatccagcagagaagaacacttggacataggttcaa
gccaataggaagtctttattagctggcagacgactgcactgggtgtctag
gatcagggtacagtcctgagatttctcagtgcatgctttttaagcacaaa
aaaacacatcctgggttgacacacctcagttatcaagaatggaacaagag
aatcccaaaatcaaggttagtaaatttagggactttcctagaactgtgga
cgtggatggattaggtctttgttctcgtattgacaggtgttgctgcctgt
gtgctgggttttacttccaccatggcatcagttatactgaggtttgggca
gtggctgcagctgcatgtgtgtggagatcagatgagaacattatggagtc
agttattcttatcccatcctcacacatattcagagatccaattcaggtca
tccagctcgcctgacaagcctctcttccactgagcaatccggctagccct
cttagagctaacagaagtcaagaaatgcatccaagatcaccgagtcctaa
atgatgcaaccaacacccaccttcagctccagtgccaggacttcacttac
tgtcagagcacctcactgttatgtctccctccaggcagatgcctgcaagc
accccagagctccaccagccacccaaaagaagctcagggtgtctccattt
ataattcaaccagagttcaaatgcagtccagaggcaaaaggtctaccacc
ttccttgctgcttcagctgagtagcaagggtttagactccaatccagtac
agagggcagagccatgtttgcactgtacctcctctagagacttccctaga
gtttagcaaccagtgcaggcctttcctggagagcagtctgcttcacagta
ccatatcacaggggccctacagaaggtccaaggggttgccttagacaagt
acgagcttggcctttctccagtccaggcttctccaatactgtcaagaact
tctcttttgcaacgagatagccctcgagtgtcttaccactcacttctctc
tcaggagctaccttgctcctga
gaattctcgttccactgtcttatacaggagagtgcctcaagctagcagca
gcaatgaatttattcctgctcttgcatttctaaaaaaaataaaagataaa
aaatactttaggtcgcaagtcttcaatgggtaattttatataccttaatg
gcattctactttctttgtttccccctgtgtgtagtaggtgaaataaactt
tctagtaatcaagtgatattaagttttctttaaaagtaaatatgatcttg
ctaaaataagattttatttaaaggcaaatatggaatatcagagtaagtga
aatggtctgtagaatttggcagtggtatcatcagattctaagttgttttg
ttttgttttgttttaagagagacattattgaatcactgtctttgttcatt
actggtctgttcagatatcttatacactttgttgtgattcaatgctaaca
ggctgtttaagaccagggatatatgattttcttctaggttttccaacttc
ttagtgtacaactgttcatgatgatctcttaagatccttcatagtactgt
ggtatcagctgcaatatcccccctctctctttgtctctctgtgtctttgt
ctctgtctctctctctttctctctagttttgtttttgtttgttttctgtt
ctttggttttttttgttgttgttgtttttgtttttgtttttgtttttttg
agacagggttttgtggcttctctgtgtagctgtaactgtttctagaactc
agtctgtagacacggctggcctcaaccctcatggaaacacacttgtcctg
cttcctgagtgctgggactaagggcgtgtgccaccacggcccagcagtct
ttctcatctgtgaatttacaaatttaagttttctcttagatttcctaata
gtcagagaaaagttgttgatttatctttttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_11801264_11802456
seq2: B6Ng01-089F11.b_46_1217

seq1  GAATTCAGTTTTCATCCACTTTATGACTTAAGTCTCCTTTTTAGAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTCATCCACTTTATGACTTAAGTCTCCTTTTTAGAAAAGC  50

seq1  TTTATTTTATTTGTTATTATTGTATGTCTATTATGGGGGCACGTGGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATTTGTTATTATTGTATGTCTATTATGGGGGCACGTGGGTGT  100

seq1  CCAGTGTCATGGGCTATCCAGCAGAGAAGAACACTTGGACATAGGTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTCATGGGCTATCCAGCAGAGAAGAACACTTGGACATAGGTTCAA  150

seq1  GCCAATAGGAAGTCTTTATTAGCTGGCAGACGACTGCACTGGGTGTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAGGAAGTCTTTATTAGCTGGCAGACGACTGCACTGGGTGTCTAG  200

seq1  GATCAGGGTACAGTCCTGAGATTTCTCAGTGCATGCTTTTTAAGCACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGGTACAGTCCTGAGATTTCTCAGTGCATGCTTTTTAAGCACAAA  250

seq1  AAAACACATCCTGGGTTGACACACCTCAGTTATCAAGAATGGAACAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACATCCTGGGTTGACACACCTCAGTTATCAAGAATGGAACAAGAG  300

seq1  AATCCCAAAATCAAGGTTAGTAAATTTAGGGACTTTCCTAGAACTGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAAATCAAGGTTAGTAAATTTAGGGACTTTCCTAGAACTGTGGA  350

seq1  CGTGGATGGATTAGGTCTTTGTTCTCGTATTGACAGGTGTTGCTGCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGATGGATTAGGTCTTTGTTCTCGTATTGACAGGTGTTGCTGCCTGT  400

seq1  GTGCTGGGTTTTACTTCCACCATGGCATCAGTTATACTGAGGTTTGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGTTTTACTTCCACCATGGCATCAGTTATACTGAGGTTTGGGCA  450

seq1  GTGGCTGCAGCTGCATGTGTGTGGAGATCAGATGAGAACATTATGGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGCAGCTGCATGTGTGTGGAGATCAGATGAGAACATTATGGAGTC  500

seq1  AGTTATTCTTATCCCATCCTCACACATATTCAGAGATCCAATTCAGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCTTATCCCATCCTCACACATATTCAGAGATCCAATTCAGGTCA  550

seq1  TCCAGCTCGCCTGACAAGCCTCTCTTCCACTGAGCAATCCGGCTAGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCGCCTGACAAGCCTCTCTTCCACTGAGCAATCCGGCTAGCCCT  600

seq1  CTTAGAGCTAACAGAAGTCAAGAAATGCATCCAAGATCACCGAGTCCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGCTAACAGAAGTCAAGAAATGCATCCAAGATCACCGAGTCCTAA  650

seq1  ATGATGCAACCAACACCCACCTTCAGCTCCAGTGCCAGGACTTCACTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCAACCAACACCCACCTTCAGCTCCAGTGCCAGGACTTCACTTAC  700

seq1  TGTCAGAGCACCTCACTGTTATGTCTCCCTCCAGGCAGATGCCTGCAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGCACCTCACTGTTATGTCTCCCTCCAGGCAGATGCCTGCAAGC  750

seq1  ACCCCAGAGCTCCACCAGCCACCCAAAAGAAGCTCAGGGTGTCTCCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAGCTCCACCAGCCACCCAAAAGAAGCTCAGGGTGTCTCCATTT  800

seq1  ATAATTCAACCAGAGTTCAAATGCAGTCCAGAGGCAAAAGGTCTACCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAACCAGAGTTCAAATGCAGTCCAGAGGCAAAAGGTCTACCACC  850

seq1  TTCCTTGCTGCTTCAGCTGAGTAGCAAGGGTTTAGACTCCAATCCAGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCTGCTTCAGCTGAGTAGCAAGGGTTTAGACTCCAATCCAGTAC  900

seq1  AGAGGGCAGAGCCATGTTTGCACTGTACCTCCTCTAGAGACCTCCCTAGA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAGGGCAGAGCCATGTTTGCACTGTACCTCCTCTAGAGACTTCCCTAGA  950

seq1  GTTAAGCAAACAGTGCAGGCCTTTCCTGGAGAGCCAGTCTGCTTCACAGT  1000
      ||| ||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTAGCAACCAGTGCAGGCCTTTCCTGGAGAG-CAGTCTGCTTCACAGT  999

seq1  ACCATATCACAGGGGCCCTACAGAAAGTCCAAAGGGGTTGCCCTAGGACA  1050
      ||||||||||||||||||||||||| |||| ||||||||||| || ||||
seq2  ACCATATCACAGGGGCCCTACAGAAGGTCC-AAGGGGTTGCCTTA-GACA  1047

seq1  AGACAGAGCTTGGCCCTTTCTCCAGCCCAGGTCTTCTCCCATACTGTCAA  1100
      ||   |||||||| ||||||||||| ||||| ||||||| ||||||||||
seq2  AGTACGAGCTTGG-CCTTTCTCCAGTCCAGG-CTTCTCCAATACTGTCAA  1095

seq1  AGAAACTCCTTCCTTTTGCAAACGAGATAGCCCTCAGAGTGTCTCTACCC  1150
         |||| ||  ||||||| ||||||||||||||| |||||||| |||| 
seq2  --GAACTTCT--CTTTTGC-AACGAGATAGCCCTC-GAGTGTCT-TACC-  1137

seq1  AACTCACTT-TCTCTCCAAAGGAAAGCTACCCTTTGCTCTCTGA  1193
       |||||||| ||||||   |||  |||||||  |||||| ||||
seq2  -ACTCACTTCTCTCTC---AGG--AGCTACC--TTGCTC-CTGA  1172

seq1: chr4_11941046_11941744
seq2: B6Ng01-089F11.g_70_768 (reverse)

seq1  AAAAAAACAAAAACAAAAACAAAAACAACAACAACAAAAAAAACCAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAAACAAAAACAAAAACAACAACAACAAAAAAAACCAAAGA  50

seq1  ACAGAAAACAAACAAAAACAAAACTAGAGAGAAAGAGAGAGAGACAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAACAAACAAAAACAAAACTAGAGAGAAAGAGAGAGAGACAGAGA  100

seq1  CAAAGACACAGAGAGACAAAGAGAGAGGGGGGATATTGCAGCTGATACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACACAGAGAGACAAAGAGAGAGGGGGGATATTGCAGCTGATACCA  150

seq1  CAGTACTATGAAGGATCTTAAGAGATCATCATGAACAGTTGTACACTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTATGAAGGATCTTAAGAGATCATCATGAACAGTTGTACACTAAG  200

seq1  AAGTTGGAAAACCTAGAAGAAAATCATATATCCCTGGTCTTAAACAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGAAAACCTAGAAGAAAATCATATATCCCTGGTCTTAAACAGCCT  250

seq1  GTTAGCATTGAATCACAACAAAGTGTATAAGATATCTGAACAGACCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATTGAATCACAACAAAGTGTATAAGATATCTGAACAGACCAGTA  300

seq1  ATGAACAAAGACAGTGATTCAATAATGTCTCTCTTAAAACAAAACAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAAGACAGTGATTCAATAATGTCTCTCTTAAAACAAAACAAAAC  350

seq1  AAAACAACTTAGAATCTGATGATACCACTGCCAAATTCTACAGACCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTTAGAATCTGATGATACCACTGCCAAATTCTACAGACCATTT  400

seq1  CACTTACTCTGATATTCCATATTTGCCTTTAAATAAAATCTTATTTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTCTGATATTCCATATTTGCCTTTAAATAAAATCTTATTTTAGC  450

seq1  AAGATCATATTTACTTTTAAAGAAAACTTAATATCACTTGATTACTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATATTTACTTTTAAAGAAAACTTAATATCACTTGATTACTAGAA  500

seq1  AGTTTATTTCACCTACTACACACAGGGGGAAACAAAGAAAGTAGAATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTCACCTACTACACACAGGGGGAAACAAAGAAAGTAGAATGCC  550

seq1  ATTAAGGTATATAAAATTACCCATTGAAGACTTGCGACCTAAAGTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTATATAAAATTACCCATTGAAGACTTGCGACCTAAAGTATTTT  600

seq1  TTATCTTTTATTTTTTTTAGAAATGCAAGAGCAGGAATAAATTCATTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTATTTTTTTTAGAAATGCAAGAGCAGGAATAAATTCATTGCT  650

seq1  GCTGCTAGCTTGAGGCACTCTCCTGTATAAGACAGTGGAACGAGAATTC  699
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTAGCTTGAGGCACTCTCCTGTATAAGACAGTGGAACGAGAATTC  699