BAC Information

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BAC

Clone NameB6Ng01-089J06
Chromosome4 (Build37)
Map Location 14,161,731 - 14,162,316
singlet/doubletsinglet
Overlap geneLOC100040030
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687
Downstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089J06.bB6Ng01-089J06.g
ACCDH902120DH902121
length1,173696
definitionDH902120|Mus musculus domesticus DNA, BAC clone: B6Ng01-089J06, 5' end.DH902121|Mus musculus domesticus DNA, BAC clone: B6Ng01-089J06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcccaggtggttcctgttagaccttctgtgtttgcattcctc
tgttttatgtaagaatccagtaacctctttgtaccttgctggtgtgtcac
ccaacttccttattgtcttcagcataaaatgtctgatgctcgatttgaca
ttacattcagattccatacgacctctcctgtgtgcgtctgtctgtcaatt
catcctatgctttgtctacccgagactagagacccgttccacgcagacaa
aggggcccagagggtctgcggcagaacatcttggtttctctatttatggt
aattgagagttttgctgggtatagtagcctaggctagcatttgtgttctc
ttaaggtctgcataacatctgtctaagatcttctgggttttagagtctat
gctgaaaaatctggtataattctgataggtctgtctttatatgttacttc
aaccttttcccttacccctttttagtattctttctattttctgtatattt
agtgttttgattattatgtgatgagaggaatatcttttctggtacaatct
atttggtgttctgtaggcttcttgtacatttatgaccatctctttcttta
gatttggaaagttttcttctatgatatgattttgttgaagatgttttctg
gtgtctgaattgggaatctttactctcttcttttcctatcattcttaggt
ttggtcttttcatttgtgtcctgaatttcctggttgttttaggttaggat
ctttttatactttgtattttatttgatgttggttcaatatcttttatggt
tcttctacatctgagactttctcttctatctctagtattctgttggtgat
gcttgcttgcatttgtaacttctgacctcttttctcagcttttccatctt
caggtttacctccttttgtaatttccttactgcttcatttcacttttaga
tcttggatggttttgtccattgttcatctgttgtgttcctggatttcttt
agggatttatgtgttcctctttagcctctagcatctcatgagatggattt
agtcagaatcttgcttttcaagttgttgggtatcaggaatgtcttgggga
agaccgggttctgatggtccaatgacattggtcctgtgctattttctatg
tcgtagcctcatgccaaccttgt
gaattcttctccttcatctattcctattatatgtaggtttgtggttttgt
tttgttttgtttgtttgttttttatggtgtcccagatttcctgggatgct
ttgtgtcagacattttttagattttgcaatttctttgaccaatttatcca
tttctttgattgtgtcttcaatgcctgctttcttttatttcttgtattct
gttaatgaattttgccttttgcctttctcgctcctgtctgcatgcctaca
ctttttttcttttcatttttttttgttttttgtttgtttgtttgtttatt
tgtttatttgttgtgcttcaactatgatggaatatttatgcagtggtagg
atagctggagatatactactctggttattgttgattgtgttcttatgctg
ctgtctaggtttgggttgattagagttttaggtgattattatttgtagat
ttgcctttgttgggtggtgttattccttgttttttgtttcttctctggat
gtttagagactgtgttggatgtgtactggatattttactggcctgcttta
ctgatgtgttcaaaggaaatgatctctagtattgggggctcgtcttcaga
catggggcctgaggttgaccaagaggtttccaccccagtgggagattgag
acatgtggggagtaatagtcaaagggcaatggcctgtggcatcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_14161731_14162316
seq2: B6Ng01-089J06.g_181_765

seq1  ATTTTTTAGATTTTGCAATTTCTTTGACCAATTTATCCATTTCTTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAGATTTTGCAATTTCTTTGACCAATTTATCCATTTCTTTGATT  50

seq1  GTGTCTTCAATGCCTGCTTTCTTTTATTTCTTGTATTCTGTTAATGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCAATGCCTGCTTTCTTTTATTTCTTGTATTCTGTTAATGAATT  100

seq1  TTGCCTTTTGCCTTTCTCGCTCCTGTCTGCATGCCTACACTTTTTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTTGCCTTTCTCGCTCCTGTCTGCATGCCTACACTTTTTTTCTT  150

seq1  TTCATTTTTTTTTGTTTTTTGTTTGTTTGTTTGTTTATTTGTTTATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTTTTTGTTTTTTGTTTGTTTGTTTGTTTATTTGTTTATTTGT  200

seq1  TGTGCTTCAACTATGATGGAATATTTATGCAGTGGTAGGATAGCTGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCAACTATGATGGAATATTTATGCAGTGGTAGGATAGCTGGAGA  250

seq1  TATACTACTCTGGTTATTGTTGATTGTGTTCTTATGCTGCTGTCTAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTACTCTGGTTATTGTTGATTGTGTTCTTATGCTGCTGTCTAGGTT  300

seq1  TGGGTTGATTAGAGTTTTAGGTGATTATTATTTGTAGATTTGCCTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGATTAGAGTTTTAGGTGATTATTATTTGTAGATTTGCCTTTGTT  350

seq1  GGGTGGTGTTATTCCTTGTTTTTTGTTTCTTCTCTGGATGTTTAGAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTGTTATTCCTTGTTTTTTGTTTCTTCTCTGGATGTTTAGAGACT  400

seq1  GTGTTGGATGTGTACTGGATATTTTACTGGCCTGCTTTACTGATGTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGATGTGTACTGGATATTTTACTGGCCTGCTTTACTGATGTGTTC  450

seq1  AAAGGAAATGATCTCTAGTATTGGGGGCTCGTCTTCAGACATGGGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATGATCTCTAGTATTGGGGGCTCGTCTTCAGACATGGGGCCTG  500

seq1  AGGTTGACCAAGAGGTTTCCACCCCAGTGGGAGATTGAGACAGTGTGGGG  550
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGTTGACCAAGAGGTTTCCACCCCAGTGGGAGATTGAGACA-TGTGGGG  549

seq1  AGTAATAGTCAATGGGCAATGGCCTGTGGCATCCTC  586
      |||||||||||| |||||||||||||||||||||||
seq2  AGTAATAGTCAAAGGGCAATGGCCTGTGGCATCCTC  585