BAC Information

Click to search

BAC

Clone NameB6Ng01-090B05
Chromosome4 (Build37)
Map Location 76,682,344 - 76,875,188
singlet/doubletdoublet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090B05.bB6Ng01-090B05.g
ACCDH902476DH902477
length1,157209
definitionDH902476|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B05, 5' end.DH902477|Mus musculus domesticus DNA, BAC clone: B6Ng01-090B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,874,019 - 76,875,188)(76,682,344 - 76,682,552)
sequence
gaattctctttaactgtacatttttacaacataacatggaagtaaaatag
acttgaccttcttagagagagttcaagtttaaaaatattgtatttcacca
cttgttttatgctctgcaacctccatttgttctggatttttgattgtgtg
gggaaacatttttaagagagtcttaatattcaatatgtatatggaaatgc
cctaagcctgaattattgtcaggtttattgatgctaaatcgtatcatttc
attttaatctcattattttaagtacatgctagcttttaaaatcattgagc
ttttaaaactttcatttcgtaatgaattagtgtaggtccataaaagtcac
gggcaatcatggtgagaatataggcatattaagtaaacgtgcacaaatca
tgcactctctccccagctcccttcctaaggaatgaaagctcatcaatctg
taactggagttttttataagatacaatgcataataaatttgaatttaggg
aaataaaaagtcatagcgaaaggaaacttttttaaagcagtaataatcag
taaggaaagtcctagcgactgtagggcagctgggcaggaaagaataacta
ttaaggagtgaagtaaagaataatctacagaagaatcaagggaactctag
tagatgtaatctaaagctcttataaggtctgagcaagaaatcagaaagaa
attcctgtcagtgtgagcttgacagctttcacctgaggacagagttgccc
tctcctttatggaaaggcaaaaagataaaattctcacgtctgcatcaagc
tatgtttgctcatttcaacattatgttttcacatgtctatgctgcgttca
ccaaataccaacgtaagttaaaggtactaattattctatttagtaggaag
acctttagtctagtaggagatatcttcctgcccctggcagaacatcattg
gatatttatagaaaaaagaagtgtttaaagcaaactgttcatttgttcac
agttcaccaattagataaaaaaaatgcctgcaaccgaagcctgatttagg
actttcagtacattttttggacacatttgtagtgagggagaagtatcaga
agtaaaatccagttccaggtgctttcatgtagaatgttagcatttatgcc
ctgccct
tcttaatttcaaataactatcctttactttaaacaattccatttttgttc
atattttacatttgtttttgtgaataaaatattcaaaaccttctacacgc
acatatcaaaatgtcaaaatgaatccaattgttatatttaatatataata
ataagatattattcattaaatatacattgttaaagatgataaacctgtgt
gtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76874019_76875188
seq2: B6Ng01-090B05.b_45_1201 (reverse)

seq1  AGGGCAGAGCATAAATGCTAACAGTCTACATGAAAGCACCTGGAACTTGG  50
      ||||||| ||||||||||||||| |||||||||||||||||||||| |||
seq2  AGGGCAGGGCATAAATGCTAACATTCTACATGAAAGCACCTGGAAC-TGG  49

seq1  ATTTTTACCTTCTTGATACTTCTTCCTCACTACAAATGTGTCCAAAAAAT  100
      |||||   |||| |||||||||| ||||||||||||||||||||||||| 
seq2  ATTTT--ACTTC-TGATACTTCTCCCTCACTACAAATGTGTCCAAAAAA-  95

seq1  TGTACTGAAAGTCTTAAATCAGGCTTTCGGTTGCAGGCATTTTTTTTATC  150
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  TGTACTGAAAGTCCTAAATCAGGC-TTCGGTTGCAGGCATTTTTTTTATC  144

seq1  TTAATTGTTGAACTGTGAACAAATTGAACAGTTTTGCTTTAAACACTTCT  200
       |||||| ||||||||||||||| ||||||| ||||||||||||||||||
seq2  -TAATTGGTGAACTGTGAACAAA-TGAACAG-TTTGCTTTAAACACTTCT  191

seq1  TTTTTCTATAAAATATCCAATGATTGTTCCTGCCAGGGGCAGGAAGATAT  250
      ||||||||| ||||||||||||| |||| |||||||||||||||||||||
seq2  TTTTTCTAT-AAATATCCAATGA-TGTT-CTGCCAGGGGCAGGAAGATAT  238

seq1  CTTCCTACTAGACTAAAGGTCTTCCTACTAAATAGAATAATTAGTACCTT  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TCCTACTAGACTAAAGGTCTTCCTACTAAATAGAATAATTAGTACCTT  287

seq1  TAACTTACGTTGGTATTTGGTGAACGCAGCATAGACATGTGAAAACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACGTTGGTATTTGGTGAACGCAGCATAGACATGTGAAAACATAA  337

seq1  TGTTGAAATGAGCAAACATAGCTTGATGCAGACCTGAGAATTTTATCTTT  400
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTTGAAATGAGCAAACATAGCTTGATGCAGACGTGAGAATTTTATCTTT  387

seq1  TTGCCTTTCCATAAAGGAGAGGGCAACTCTGTCCTCAGGTGAAAGCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTCCATAAAGGAGAGGGCAACTCTGTCCTCAGGTGAAAGCTGTC  437

seq1  AAGCTCACACTGACAGGAATTTCTTTCTGATTTCTTGCTCAGACCTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACACTGACAGGAATTTCTTTCTGATTTCTTGCTCAGACCTTATA  487

seq1  AGAGCTTTAGATTACATCTACTAGAGTTCCCTTGATTCTTCTGTAGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTAGATTACATCTACTAGAGTTCCCTTGATTCTTCTGTAGATTA  537

seq1  TTCTTTACTTCACTCCTTAATAGTTATTCTTTCCTGCCCAGCTGCCCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACTTCACTCCTTAATAGTTATTCTTTCCTGCCCAGCTGCCCTAC  587

seq1  AGTCGCTAGGACTTTCCTTACTGATTATTACTGCTTTAAAAAAGTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCTAGGACTTTCCTTACTGATTATTACTGCTTTAAAAAAGTTTCCT  637

seq1  TTCGCTATGACTTTTTATTTCCCTAAATTCAAATTTATTATGCATTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTATGACTTTTTATTTCCCTAAATTCAAATTTATTATGCATTGTAT  687

seq1  CTTATAAAAAACTCCAGTTACAGATTGATGAGCTTTCATTCCTTAGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAAAACTCCAGTTACAGATTGATGAGCTTTCATTCCTTAGGAAG  737

seq1  GGAGCTGGGGAGAGAGTGCATGATTTGTGCACGTTTACTTAATATGCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGGGAGAGAGTGCATGATTTGTGCACGTTTACTTAATATGCCTA  787

seq1  TATTCTCACCATGATTGCCCGTGACTTTTATGGACCTACACTAATTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCACCATGATTGCCCGTGACTTTTATGGACCTACACTAATTCATT  837

seq1  ACGAAATGAAAGTTTTAAAAGCTCAATGATTTTAAAAGCTAGCATGTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAATGAAAGTTTTAAAAGCTCAATGATTTTAAAAGCTAGCATGTACT  887

seq1  TAAAATAATGAGATTAAAATGAAATGATACGATTTAGCATCAATAAACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATGAGATTAAAATGAAATGATACGATTTAGCATCAATAAACCT  937

seq1  GACAATAATTCAGGCTTAGGGCATTTCCATATACATATTGAATATTAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAATTCAGGCTTAGGGCATTTCCATATACATATTGAATATTAAGA  987

seq1  CTCTCTTAAAAATGTTTCCCCACACAATCAAAAATCCAGAACAAATGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTAAAAATGTTTCCCCACACAATCAAAAATCCAGAACAAATGGAG  1037

seq1  GTTGCAGAGCATAAAACAAGTGGTGAAATACAATATTTTTAAACTTGAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGAGCATAAAACAAGTGGTGAAATACAATATTTTTAAACTTGAAC  1087

seq1  TCTCTCTAAGAAGGTCAAGTCTATTTTACTTCCATGTTATGTTGTAAAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAAGAAGGTCAAGTCTATTTTACTTCCATGTTATGTTGTAAAAA  1137

seq1  TGTACAGTTAAAGAGAATTC  1170
      ||||||||||||||||||||
seq2  TGTACAGTTAAAGAGAATTC  1157

seq1: chr4_76682344_76682552
seq2: B6Ng01-090B05.g_75_283

seq1  TCTTAAATTCAAATAACTATCCTTTACTTTAAACAATTCCATTTTTGTTC  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTCAAATAACTATCCTTTACTTTAAACAATTCCATTTTTGTTC  50

seq1  ATATTTTACATTTGTTTTTGTGAATAAAATATTCAAAACCTTCTACACGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTACATTTGTTTTTGTGAATAAAATATTCAAAACCTTCTACACGC  100

seq1  ACATATCAAAATGTCAAAATGAATCCAATTGTTATATTTAATATATAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAAAATGTCAAAATGAATCCAATTGTTATATTTAATATATAATA  150

seq1  ATAAGATATTATTCATTAAATATACATTGTTAAAGATGATAAACCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATATTATTCATTAAATATACATTGTTAAAGATGATAAACCTGTGT  200

seq1  GTGTGTGTG  209
      |||||||||
seq2  GTGTGTGTG  209