BAC Information

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BAC

Clone NameB6Ng01-090G17
Chromosome4 (Build37)
Map Location 11,657,689 - 11,794,511
singlet/doubletdoublet
Overlap geneCdh17
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem
Downstream genePpm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090G17.bB6Ng01-090G17.g
ACCDH902724DH902725
length8441,150
definitionDH902724|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G17, 5' end.DH902725|Mus musculus domesticus DNA, BAC clone: B6Ng01-090G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,657,689 - 11,658,529)(11,793,366 - 11,794,511)
sequence
gaattcttaagcttctgctgtagagaagggaaggcttgtgaaaactaaaa
ctaggaatcacggatggcttctgtggagtgcatcctgagaaagtcggctc
tgctggagagcagataacgttgttggtgaatgtgtatcgttgccattcaa
ggctatttccaggacccctgtgactcagacccacaggagtggcaatgcct
tccccaaaccaggctccgaggagtgaaaaggccttcccctgatctggtaa
gaatgtagacagtgtcagtaaatatcatccacagccatggatgactgcag
ccgcaaattgccaccttacagcctgcttctgcactcagttgtatgcaata
aagggccaagcttccaggctgttggtgcatttctgtcatagtgtatgagc
cacctgattccagcagttttgtatgtgcatctgtggtttgtttatcccag
tttccccagccaggtcagtcccaaagccatgcagggcactgcactgcttc
cacgtgtgatcctgcaccagatggacgagttgcccgtaagtggtgtgtgt
gtgtgtgtgtgtgtgtgtgagtgctcagccagttttgtcatgactggtct
cagcaaacagaaccatgtgaaatgcaggggtaggaaagggaaagcatgca
tggcttcccaagggagaacccaaaatcaaagccacaaaggcaggctgaac
aacaggcgctgcttgcccacgatggatgcttttcctttttctcttttttc
tctcccgcttctcttttctggaaaactttttcagagatggacgctgctat
gattcatgggtggctgatcaaggaagagccattttcccaagaac
gaattctatgaacttctaaggtgttgggtaccactttccccaagcctaga
aaacagtacatttactctctgaaggagagcaggagagtgaggtaagttgg
aaagccttctccttcccaccatcttcctagagctaaaaaaaacaaaaaac
acttgccctgtgccacttcgtttgagaatgaggtgtactttggagtaaaa
ctttccagttctttgaagagtttgagtattaagtacttaaggccttacag
ggcattaatcaaattgacatcgactgggacaaaaacagagcagccgaagt
cgagaggaaatggttgaatgtaactccaaatgtgaaatggcatctctttg
caaagagtgtggctgtgtgttacacacataaagctttgctctttggaact
tggaaggaaggctcttgagttttatgaatatctctgtgaagttctgctgt
gtatgcatttttttccgcttgaggcaggaaaactaccttccatctggccc
tccaagcagaggctagaacagagattgagaggatgaaggtgtggtctcag
gaaaatgagggaaacacacgcacagaggatgtggtgtcagctgatcctgg
tggatgtctggtcccagagaagctcagggctcactgtggtatccatcaga
taccataccgaagagcatgctggcctgcctagggaggagcagttacagtg
tccttgctggcaccctggctgtctccactcttctcaccttactcccaccc
taaactttctccagctcatgggcttctcctcccccagtttctcattttta
tataaaccctgccattttcagccatgtgctgtctttgttccctctctctt
tatcccatctccaccctccccccttcaaaacacacacacacatatacata
tatatacacactcacacacacgccctttcttttcctgcccctgccctcct
ctcatagcctagttcagtctactggtcatgttggggtccactgcttttct
cccactcgaagctgtgaactgcagttgtactgaccctcagaagttagttt
cttagcgctgagatcccaagaaacaacccccgtgtgatcaatgcttcctt
actcgtctttgcagcaccatgggtttttcctctcaagaccctccttattt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_11657689_11658529
seq2: B6Ng01-090G17.b_40_883

seq1  GAATTCTTAAGCTTCTGCTGTAGAGAAGGGAAGGCTTGTGAAAACTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGCTTCTGCTGTAGAGAAGGGAAGGCTTGTGAAAACTAAAA  50

seq1  CTAGGAATCACGGATGGCTTCTGTGGAGTGCATCCTGAGAAAGTCGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATCACGGATGGCTTCTGTGGAGTGCATCCTGAGAAAGTCGGCTC  100

seq1  TGCTGGAGAGCAGATAACGTTGTTGGTGAATGTGTATCGTTGCCATTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGAGCAGATAACGTTGTTGGTGAATGTGTATCGTTGCCATTCAA  150

seq1  GGCTATTTCCAGGACCCCTGTGACTCAGACCCACAGGAGTGGCAATGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTCCAGGACCCCTGTGACTCAGACCCACAGGAGTGGCAATGCCT  200

seq1  TCCCCAAACCAGGCTCCGAGGAGTGAAAAGGCCTTCCCCTGATCTGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAACCAGGCTCCGAGGAGTGAAAAGGCCTTCCCCTGATCTGGTAA  250

seq1  GAATGTAGACAGTGTCAGTAAATATCATCCACAGCCATGGATGACTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGACAGTGTCAGTAAATATCATCCACAGCCATGGATGACTGCAG  300

seq1  CCGCAAATTGCCACCTTACAGCCTGCTTCTGCACTCAGTTGTATGCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAATTGCCACCTTACAGCCTGCTTCTGCACTCAGTTGTATGCAATA  350

seq1  AAGGGCCAAGCTTCCAGGCTGTTGGTGCATTTCTGTCATAGTGTATGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCAAGCTTCCAGGCTGTTGGTGCATTTCTGTCATAGTGTATGAGC  400

seq1  CACCTGATTCCAGCAGTTTTGTATGTGCATCTGTGGTTTGTTTATCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATTCCAGCAGTTTTGTATGTGCATCTGTGGTTTGTTTATCCCAG  450

seq1  TTTCCCCAGCCAGGTCAGTCCCAAAGCCATGCAGGGCACTGCACTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAGCCAGGTCAGTCCCAAAGCCATGCAGGGCACTGCACTGCTTC  500

seq1  CACGTGTGATCCTGCACCAGATGGACGAGTTGCCCGTAAGTGGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGTGATCCTGCACCAGATGGACGAGTTGCCCGTAAGTGGTGTGTGT  550

seq1  GTGTGTGTGTGTGTGTGTGAGTGCTCAGCCAGTTTTGTCATGACTGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGAGTGCTCAGCCAGTTTTGTCATGACTGGTCT  600

seq1  CAGCAAACAGAACCATGTGAAATGCAGGGGTAGGAAAGGGAAAGCAGGCA  650
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGCAAACAGAACCATGTGAAATGCAGGGGTAGGAAAGGGAAAGCATGCA  650

seq1  TGGCTTCCCAAGGGAGAACCCAAAATCAAAGCCACAAAGGCAGGCTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCCAAGGGAGAACCCAAAATCAAAGCCACAAAGGCAGGCTGAAC  700

seq1  AACAGGCGCTGCTTGCCCACGATGGATGCTTTTCTTTTTTCTCTTTTTCT  750
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  AACAGGCGCTGCTTGCCCACGATGGATGCTTTTCCTTTTTCTCTTTTT-T  749

seq1  CT-TCCCGCTTCTCTTTTCT-GAAAACTTTTTCAGAGATGGACGCTGCTA  798
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCTCCCGCTTCTCTTTTCTGGAAAACTTTTTCAGAGATGGACGCTGCTA  799

seq1  TGATTCATGGGTGGCTGATCAAGGATGTG-CATTTTCCC-AGAAC  841
      ||||||||||||||||||||||||| | | ||||||||| |||||
seq2  TGATTCATGGGTGGCTGATCAAGGAAGAGCCATTTTCCCAAGAAC  844

seq1: chr4_11793366_11794511
seq2: B6Ng01-090G17.g_70_1219 (reverse)

seq1  AAATAAGGA-GCTCTTGAGA-GAAAAACCAATGGTGCTGCAAAGACGGGT  48
      ||||||||| | |||||||| |||||||| ||||||||||||||||| ||
seq2  AAATAAGGAGGGTCTTGAGAGGAAAAACCCATGGTGCTGCAAAGACGAGT  50

seq1  AGAGAGCCATTGATCACCACGGGGTTGTTTCTTGTGATCTCAGCGCTAAG  98
      |  ||  ||||||||||   |||||||||||||| |||||||||||||||
seq2  AAGGAAGCATTGATCACACGGGGGTTGTTTCTTGGGATCTCAGCGCTAAG  100

seq1  GAACTA--CTCTGAAGGGTCAGTACAACTGCAGTTCACAGCCTCGAGTGG  146
       |||||   |||| ||||||||||||||||||||||||||| ||||||||
seq2  AAACTAACTTCTG-AGGGTCAGTACAACTGCAGTTCACAGCTTCGAGTGG  149

seq1  GAGAAAAAGCAGTGGACCCCAACATGACCAGTAGACTGAACTAGACTATG  196
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAG-AAAAGCAGTGGACCCCAACATGACCAGTAGACTGAACTAGGCTATG  198

seq1  AGAGGAGGGCAGGGGCAGGAAAGGAAGGGGCGTGTGTGTGTGTGTGTGTG  246
      |||||||||||||||||||||| ||| ||||||||||||| |||||| | 
seq2  AGAGGAGGGCAGGGGCAGGAAAAGAAAGGGCGTGTGTGTGAGTGTGTATA  248

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGGGGGGAGGGTGGAGATGGG  296
      | | ||| | ||||||||||||| | ||||||||||||||||||||||||
seq2  TATATGTATATGTGTGTGTGTGT-TTTGAAGGGGGGAGGGTGGAGATGGG  297

seq1  ATAAAGAGAGAGGGAACAAAGACAGCACATGGCTG-AAATGGCAGGG-TT  344
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  ATAAAGAGAGAGGGAACAAAGACAGCACATGGCTGAAAATGGCAGGGTTT  347

seq1  ATATAAAAATGAGAAACTGGGGGAGGAGAAGCCCATGAGCTGGAG-AAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATATAAAAATGAGAAACTGGGGGAGGAGAAGCCCATGAGCTGGAGAAAGT  397

seq1  TTAGGGTGGGAGTAAGGTGAGAAGAGTGGAGACAGCCAGGGTGCCAGCAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTGGGAGTAAGGTGAGAAGAGTGGAGACAGCCAGGGTGCCAGCAA  447

seq1  GGACACTGTAACTGCTCCTCCCTAGGCAGGCCAGCATGCTCTTCGGTATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGTAACTGCTCCTCCCTAGGCAGGCCAGCATGCTCTTCGGTATG  497

seq1  GTATCTGATGGATACCACAGTGAGCCCTGAGCTTCTCTGGGACCAGACAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGATGGATACCACAGTGAGCCCTGAGCTTCTCTGGGACCAGACAT  547

seq1  CCACCAGGATCAGCTGACACCACATCCTCTGTGCGTGTGTTTCCCTCATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGATCAGCTGACACCACATCCTCTGTGCGTGTGTTTCCCTCATT  597

seq1  TTCCTGAGACCACACCTTCATCCTCTCAATCTCTGTTCTAGCCTCTGCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGACCACACCTTCATCCTCTCAATCTCTGTTCTAGCCTCTGCTT  647

seq1  GGAGGGCCAGATGGAAGGTAGTTTTCCTGCCTCAAGCGGAAAAAAATGCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCCAGATGGAAGGTAGTTTTCCTGCCTCAAGCGGAAAAAAATGCA  697

seq1  TACACAGCAGAACTTCACAGAGATATTCATAAAACTCAAGAGCCTTCCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCAGAACTTCACAGAGATATTCATAAAACTCAAGAGCCTTCCTT  747

seq1  CCAAGTTCCAAAGAGCAAAGCTTTATGTGTGTAACACACAGCCACACTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTCCAAAGAGCAAAGCTTTATGTGTGTAACACACAGCCACACTCT  797

seq1  TTGCAAAGAGATGCCATTTCACATTTGGAGTTACATTCAACCATTTCCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGAGATGCCATTTCACATTTGGAGTTACATTCAACCATTTCCTC  847

seq1  TCGACTTCGGCTGCTCTGTTTTTGTCCCAGTCGATGTCAATTTGATTAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTTCGGCTGCTCTGTTTTTGTCCCAGTCGATGTCAATTTGATTAAT  897

seq1  GCCCTGTAAGGCCTTAAGTACTTAATACTCAAACTCTTCAAAGAACTGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTAAGGCCTTAAGTACTTAATACTCAAACTCTTCAAAGAACTGGA  947

seq1  AAGTTTTACTCCAAAGTACACCTCATTCTCAAACGAAGTGGCACAGGGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTACTCCAAAGTACACCTCATTCTCAAACGAAGTGGCACAGGGCA  997

seq1  AGTGTTTTTTGTTTTTTTTAGCTCTAGGAAGATGGTGGGAAGGAGAAGGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTTTGTTTTTTTTAGCTCTAGGAAGATGGTGGGAAGGAGAAGGC  1047

seq1  TTTCCAACTTACCTCACTCTCCTGCTCTCCTTCAGAGAGTAAATGTACTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACTTACCTCACTCTCCTGCTCTCCTTCAGAGAGTAAATGTACTG  1097

seq1  TTTTCTAGGCTTGGGGAAAGTGGTACCCAACACCTTAGAAGTTCATAGAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGGCTTGGGGAAAGTGGTACCCAACACCTTAGAAGTTCATAGAA  1147

seq1  TTC  1146
      |||
seq2  TTC  1150