BAC Information

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BAC

Clone NameB6Ng01-092C01
Chromosome4 (Build37)
Map Location 67,542,965 - 67,741,673
singlet/doubletdoublet
Overlap geneLOC433715
Upstream geneLOC100039379, Hmgb1-rs18
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092C01.bB6Ng01-092C01.g
ACCDH903972DH903973
length9511,093
definitionDH903972|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C01, 5' end.DH903973|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,542,965 - 67,543,914)(67,740,579 - 67,741,673)
sequence
gaattcttactatatactagtaattatagtaagtcctattaataagatta
tttttctcaattttaatatctgagacctgtataaaatttatagaacaatt
ataaaaatatatagcaggtttttgtttttgttttttattctttttttgct
atgaactaaaataatgtttgggaggccttttgagtcatgtccttgattgt
cattttgcttcttgacttttagatgaacattataattcttgcaaacaaga
ccagctattggccactgtttgttgcatggttcagagtgaaggcaatgcct
gaaaccattattctttttccagaatagttattaatgttaagccagtatgt
tatgattttccagacttaaaatatcttcactattttattacttgttgaac
tattttgtaacttaactttggacacctgtctattatcttgatattgatta
gtaggtagttaatgtgctgagggctgtagagtacattaaaaaccatataa
cctacctcattgattttatagatgggaaaattgagagccagaaaaagaaa
tgccttatccaagattactgaattatttcatcatgaattcaaactaaagc
atagttattttaattggtaactacattttgtttacttcttaccagtgttt
tgctttaataattcttagcaattgcttattgctaatgatttgtgctaacc
actgtaaatgaatccataaatttgcaaggtttagtcctgtggttcacttc
ataatttgtagtctaataagtttattctagttaatgataattcatgtgct
ggtattggaccacaacattgaaaaatcacacccacactttttgtgtcctt
ataaaaagctgcatttaggatttcctttgttttttcttttcttttctttc
ctttctcttcctctctctctcgctctctctctctctctctctctctctct
c
gaattcctgaagcgtacactccataaggtcttgttacatatgtctatgtt
tctatagaattcacattttagtgagaaaatagaggaaagaagtacttcag
tgacactggttaattagaagtgattacaacatgtgaggattacatatgaa
gacaacaaaatagtgcataggacaaggctgcacacagagaaacatgcaaa
ccttagcggaaaccactgagtcagaaacccatcgtggaacggggctctcc
ctcaggagtattgaagcttttgtatcggtgaaccagattaagaggtccag
tctagccaatccagcctttcacttccagccaatatcatatcagagacaat
ggtacatacattagtaaactgagatctaaactctctgctctccttaaatt
tcaggcaagttatgacataaggtcattttgaaatgaagaaataaagacag
cttactgtgctctataatttcctggtaatagtagtgaagagttactattt
ttcctttttcattatcaaaaaggggaaagctgagcggtgtgtttgacagc
tcagcttctcttttacttctcactgacaatcataatgattaaaataaacc
aatccaagggcagaaaatcatgaaaacaaatagaactatagatgctaaat
aagatccatcaagtgagccttcccaacatcattgtgattctgtgtgtcta
tcacaatacatcaattagttaatcaataaatcaaaacggaggagcaatat
atgggagaaagggaatatgcatctaacttagacttatttcatttatttca
agcacacacataggaatatataattaaaagaaaagggaaaagagaggact
ggtataaggagaataggaggaggtgataaatatgatcaatacacatttta
aatttaaatatatttaaatacagctaaaatatttggaaaaacatgtcacc
agacaccctttcatacttcagtggatcaatacactgcactacaatatgtc
tttgtttctgtcttgagacaatggtttagtgcttacatacaaatatctct
tagaaaatggaggtcagaaagatttagaaagaggtttacaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67542965_67543914
seq2: B6Ng01-092C01.b_43_993

seq1  GAATTCTTACTATATACTAGTAATTATAGTAAGTCCTATTAATAAGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTATATACTAGTAATTATAGTAAGTCCTATTAATAAGATTA  50

seq1  TTTTTCTCAATTTTAATATCTGAGACCTGTATAAAATTTATAGAACAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCAATTTTAATATCTGAGACCTGTATAAAATTTATAGAACAATT  100

seq1  ATAAAAATATATAGCAGGTTTTTGTTTTTGTTTTTTATTCTTTTTTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATATATAGCAGGTTTTTGTTTTTGTTTTTTATTCTTTTTTTGCT  150

seq1  ATGAACTAAAATAATGTTTGGGAGGCCTTTTGAGTCATGTCCTTGATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTAAAATAATGTTTGGGAGGCCTTTTGAGTCATGTCCTTGATTGT  200

seq1  CATTTTGCTTCTTGACTTTTAGATGAACATTATAATTCTTGCAAACAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTTCTTGACTTTTAGATGAACATTATAATTCTTGCAAACAAGA  250

seq1  CCAGCTATTGGCCACTGTTTGTTGCATGGTTCAGAGTGAAGGCAATGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTATTGGCCACTGTTTGTTGCATGGTTCAGAGTGAAGGCAATGCCT  300

seq1  GAAACCATTATTCTTTTTCCAGAATAGTTATTAATGTTAAGCCAGTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATTATTCTTTTTCCAGAATAGTTATTAATGTTAAGCCAGTATGT  350

seq1  TATGATTTTCCAGACTTAAAATATCTTCACTATTTTATTACTTGTTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTTCCAGACTTAAAATATCTTCACTATTTTATTACTTGTTGAAC  400

seq1  TATTTTGTAACTTAACTTTGGACACCTGTCTATTATCTTGATATTGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTAACTTAACTTTGGACACCTGTCTATTATCTTGATATTGATTA  450

seq1  GTAGGTAGTTAATGTGCTGAGGGCTGTAGAGTACATTAAAAACCATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAGTTAATGTGCTGAGGGCTGTAGAGTACATTAAAAACCATATAA  500

seq1  CCTACCTCATTGATTTTATAGATGGGAAAATTGAGAGCCAGAAAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCATTGATTTTATAGATGGGAAAATTGAGAGCCAGAAAAAGAAA  550

seq1  TGCCTTATCCAAGATTACTGAATTATTTCATCATGAATTCAAACTAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATCCAAGATTACTGAATTATTTCATCATGAATTCAAACTAAAGC  600

seq1  ATAGTTATTTTAATTGGTAACTACATTTTGTTTACTTCTTACCAGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATTTTAATTGGTAACTACATTTTGTTTACTTCTTACCAGTGTTT  650

seq1  TGCTTTAATAATTCTTAGCAATTGCTTATTGCTAATGATTTGTGCTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAATAATTCTTAGCAATTGCTTATTGCTAATGATTTGTGCTAACC  700

seq1  ACTGTAAATGAATCCATAAATTTGCAAGGTTTAGTCCTGTGGTTCACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAATGAATCCATAAATTTGCAAGGTTTAGTCCTGTGGTTCACTTC  750

seq1  ATAATTTGTAGTCTAATAAG-TTATTCTAGTTAATGATAATTCATGTGCT  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAATTTGTAGTCTAATAAGTTTATTCTAGTTAATGATAATTCATGTGCT  800

seq1  GGTATTGGACCACAACATTGAAAAATCACAACCACACTTTTTGTGTCCTT  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGTATTGGACCACAACATTGAAAAATCACACCCACACTTTTTGTGTCCTT  850

seq1  ATAAAAGGCTGCATTTAGGATTTCCTTTGTTTTTTCTTTTCTTTTCTTTC  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCTGCATTTAGGATTTCCTTTGTTTTTTCTTTTCTTTTCTTTC  900

seq1  CTTTCTCTTCCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTCCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCT  950

seq1  C  950
      |
seq2  C  951

seq1: chr4_67740579_67741673
seq2: B6Ng01-092C01.g_71_1163 (reverse)

seq1  GTTTGTATACACTC-TTCT-AATCTTTCTGACTTCAATATCTTTAGAGAT  48
      ||||||| || ||| |||| |||||||||||| || || |  | ||||||
seq2  GTTTGTAAAC-CTCTTTCTAAATCTTTCTGACCTCCATTTTCTAAGAGAT  49

seq1  AATTTGTATGTAAGGCACTAAACCATTGTCTCAAGACAGAAACAAAGACA  98
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -ATTTGTATGTAA-GCACTAAACCATTGTCTCAAGACAGAAACAAAGACA  97

seq1  TATTGTAGTGCAGTGTATTGATCCACTGAAGTATGAAAGGGTGTCTGGTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGTGCAGTGTATTGATCCACTGAAGTATGAAAGGGTGTCTGGTG  147

seq1  ACATGTTTTT-CAAATATTTTAGCTTGTATTTAAATATATTTAAATTTAA  197
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  ACATGTTTTTCCAAATATTTTAGC-TGTATTTAAATATATTTAAATTTAA  196

seq1  AATGTGTATTTGATCATATTTATCACCTCCTCCTATTCTCCTTATACCAG  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTA-TTGATCATATTTATCACCTCCTCCTATTCTCCTTATACCAG  245

seq1  TCCTCTCTTTTCCCTTTTCTTTTAATTATATATTCCTATGTGTGTGCTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTTTCCCTTTTCTTTTAATTATATATTCCTATGTGTGTGCTTG  295

seq1  AAATAAATGAAATAAGTCTAAGTTAGATGCATATTCCCTTTCTCCCATAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGAAATAAGTCTAAGTTAGATGCATATTCCCTTTCTCCCATAT  345

seq1  ATTGCTCCTCCGTTTTGATTTATTGATTAACTAATTGATGTATTGTGATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCCTCCGTTTTGATTTATTGATTAACTAATTGATGTATTGTGATA  395

seq1  GACACACAGAATCACAATGATGTTGGGAAGGCTCACTTGATGGATCTTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAGAATCACAATGATGTTGGGAAGGCTCACTTGATGGATCTTAT  445

seq1  TTAGCATCTATAGTTCTATTTGTTTTCATGATTTTCTGCCCTTGGATTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCTATAGTTCTATTTGTTTTCATGATTTTCTGCCCTTGGATTGG  495

seq1  TTTATTTTAATCATTATGATTGTCAGTGAGAAGTAAAAGAGAAGCTGAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAATCATTATGATTGTCAGTGAGAAGTAAAAGAGAAGCTGAGC  545

seq1  TGTCAAACACACCGCTCAGCTTTCCCCTTTTTGATAATGAAAAAGGAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAACACACCGCTCAGCTTTCCCCTTTTTGATAATGAAAAAGGAAAA  595

seq1  ATAGTAACTCTTCACTACTATTACCAGGAAATTATAGAGCACAGTAAGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACTCTTCACTACTATTACCAGGAAATTATAGAGCACAGTAAGCT  645

seq1  GTCTTTATTTCTTCATTTCAAAATGACCTTATGTCATAACTTGCCTGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTTCTTCATTTCAAAATGACCTTATGTCATAACTTGCCTGAAA  695

seq1  TTTAAGGAGAGCAGAGAGTTTAGATCTCAGTTTACTAATGTATGTACCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAGAGCAGAGAGTTTAGATCTCAGTTTACTAATGTATGTACCAT  745

seq1  TGTCTCTGATATGATATTGGCTGGAAGTGAAAGGCTGGATTGGCTAGACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGATATGATATTGGCTGGAAGTGAAAGGCTGGATTGGCTAGACT  795

seq1  GGACCTCTTAATCTGGTTCACCGATACAAAAGCTTCAATACTCCTGAGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCTTAATCTGGTTCACCGATACAAAAGCTTCAATACTCCTGAGGG  845

seq1  AGAGCCCCGTTCCACGATGGGTTTCTGACTCAGTGGTTTCCGCTAAGGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCGTTCCACGATGGGTTTCTGACTCAGTGGTTTCCGCTAAGGTT  895

seq1  TGCATGTTTCTCTGTGTGCAGCCTTGTCCTATGCACTATTTTGTTGTCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTTCTCTGTGTGCAGCCTTGTCCTATGCACTATTTTGTTGTCTT  945

seq1  CATATGTAATCCTCACATGTTGTAATCACTTCTAATTAACCAGTGTCACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAATCCTCACATGTTGTAATCACTTCTAATTAACCAGTGTCACT  995

seq1  GAAGTACTTCTTTCCTCTATTTTCTCACTAAAATGTGAATTCTATAGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACTTCTTTCCTCTATTTTCTCACTAAAATGTGAATTCTATAGAAA  1045

seq1  CATAGACATATGTAACAAGACCTTATGGAGTGTACGCTTCAGGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACATATGTAACAAGACCTTATGGAGTGTACGCTTCAGGAATTC  1093