BAC Information

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BAC

Clone NameB6Ng01-093A13
Chromosome4 (Build37)
Map Location 15,534,671 - 15,670,313
singlet/doubletdoublet
Overlap geneLOC100040095
Upstream geneSlc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
Downstream geneLOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093A13.bB6Ng01-093A13.g
ACCDH904634DH904635
length1,1151,175
definitionDH904634|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A13, 5' end.DH904635|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,534,671 - 15,535,789)(15,669,123 - 15,670,313)
sequence
gaattcctcattagccatcatttgtagcacacaaaagggtctttctctga
gaaattttatatcatatttcactactctctctcttctcataaacatcaaa
catttgacaatatctgctcactttttttttataggaacataatcagtttt
ggagtcgttttttcccagtttgccacagttgatacactatctatgtaaaa
gcctttctagcacatggttttaccccttcacctttctaggtagcgtggta
ttggagttgtagaaaaaacaaaaacaaaccccaaaacaacagattttagc
accaggtagtcctaacatagaaggtcctaatatataagtcctgtatataa
ggtacctaacctactatgtgaaaatatattcatatttatagttccgctac
tcagaaaagagtctcaaatctccccacaaatgactgatacttaccacttt
tataatatttattcatctaatcaatattttaatattacactataatgccg
aatttgatatttgatatttgatatttgatctctgccaggttttctctaag
agttcgtccctctgcagataatgtgtgaagaggtgaagacatagatctgg
tctctagaaagccttaaatccaggaaagaagcctggggtatttaaatatg
cacatctattccagaggccagtagaaaaataaacttgtttcggtcctttt
acatttttaaattaaatgcaatttgttactagaaagcaactaggatcctg
ttaaatatgtatttgaagatttgatcttcattgaaatactagctagttta
agcctcccatcttatttactcacacttaattctatttctattggattctg
attttctcagtagataatgaaggcaatatgtataggaactatagcacctt
aaaggagttctataaacataatccagttttatagttcctttcacaaccgt
tcaaatatcattaatgatttgaaagaacactgctaccagacggtaatata
aagacccacttacccacttgggcagccagcacaaacatgaatgtgaattt
cctgactaacaaaatgcttcagacttctgcttctattggagggaagatgc
caatgtaggagcagc
gaattccacatgaagccctctctcttaaaatttcaaaacacactggaaga
aggaaaggaaatcatgtgtttagcctgtaagtgctcagtgggtgggctct
ttccaggaaaccgaggatgcaggattctgtaaggctgtctgaatttctgc
ttgaaattattcattctcctgtctggtcagactaaagccattcaccttgc
tcttagttaagcatcacctttcttgcgatgcattttacaggaacatggta
tgccatgttcttgtgctctgatgtcagcagatggttcagcttacaggtct
tacagatctgtaagaagattaagtaaagactcagcctccagggcattctg
tacatgaggcttcttttctcagtgtgtagacatgttatatattttccatc
attaattcaaaattgtacaaaagccaatataattatttgacttattaaac
ttgaaaaagatggaaaggaagctagccagtatctctgtgttctcaaaaat
gcttacatatcttctaaaataataaagatatttcatgaacatgttttggg
cctactaaaatttacagatgtagtacaatatactccattttcacttttga
ttattgaactggagtataaaacatcttatattcatgaatgcctatttggc
gtatccacaaagtagaggtttgcttcccctagaagtggatggtagaaaaa
catcggaaagtacatttttccaaacatggttattcattttaaaatcctac
ttgtcaaccactcaacctctttgctgcttaactctggcttctgcttggct
catgcaaagtttcaatgtgtagatatgaatgccagctcttattttccagg
cttcctatgtaggtgactagttgtcttagtcttcttcgcaccatgctggt
actgtcctagagcatccttcttagaattatgaaaagcctccactctctag
ataaagtcaggaggtgggtgagaaattacatgtagtgtccgcaatgagga
gttgatccaccatgttcttccaataaagcacatggatggtcctgttacag
atggaaacctattataattattcccaagtgaacctggtaaccaatgccat
tagcctcagacagattatggcaagggtagataatggggtgctcctaaggt
gtggcagttattgtagtcaacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_15534671_15535789
seq2: B6Ng01-093A13.b_37_1151

seq1  GAATTCCTCATTAGCCATCATTTGTAGCACAC-AAGGGGTCTTTCTCTGA  49
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  GAATTCCTCATTAGCCATCATTTGTAGCACACAAAAGGGTCTTTCTCTGA  50

seq1  GAAATTTTATATCATATTTCACTACTCTCTCTCTTCTCATAAACATCAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTATATCATATTTCACTACTCTCTCTCTTCTCATAAACATCAAA  100

seq1  CATTTGACAATATCTGCTCACTTTTTTTTTATAGGAACATAATCAGTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGACAATATCTGCTCACTTTTTTTTTATAGGAACATAATCAGTTTT  150

seq1  GGAGTCGTTTTTTCCCAGTTTGCCACAGTTGATACACTATCTATGTAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCGTTTTTTCCCAGTTTGCCACAGTTGATACACTATCTATGTAAAA  200

seq1  GCCTTTCTAGCACATGGTTTTACCCCTTCACCTTTCTAGGTAGCGTGGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTAGCACATGGTTTTACCCCTTCACCTTTCTAGGTAGCGTGGTA  250

seq1  TTGGAGTTGTAGAAAAAACAAAAACAAACCCCAAAACAACAGATTTTAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTGTAGAAAAAACAAAAACAAACCCCAAAACAACAGATTTTAGC  300

seq1  ACCAGGTAGTCCTAACATAGAAGGTCCTAATATATAAGTCCTGTATATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTAGTCCTAACATAGAAGGTCCTAATATATAAGTCCTGTATATAA  350

seq1  GGTACCTAACCTACTATGTGAAAATATATTCATATTTATAGTTCCGCTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTAACCTACTATGTGAAAATATATTCATATTTATAGTTCCGCTAC  400

seq1  TCAGAAAAGAGTCTCAAATCTCCCCACAAATGACTGATACTTACCACTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAGAGTCTCAAATCTCCCCACAAATGACTGATACTTACCACTTT  450

seq1  TATAATATTTATTCATCTAATCAATATTTTAATATTACACTATAATGCCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTTATTCATCTAATCAATATTTTAATATTACACTATAATGCCG  500

seq1  AATTTGATATTTGATATTTGATATTTGATCTCTGCCAGGTTTTCTCTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATATTTGATATTTGATATTTGATCTCTGCCAGGTTTTCTCTAAG  550

seq1  AGTTCGTCCCTCTGCAGATAATGTGTGAAGAGGTGAAGACATAGATCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGTCCCTCTGCAGATAATGTGTGAAGAGGTGAAGACATAGATCTGG  600

seq1  TCTCTAGAAAGCCTTAAATCCAGGAAAGAAGCCTGGGGTATTTAAATATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAAAGCCTTAAATCCAGGAAAGAAGCCTGGGGTATTTAAATATG  650

seq1  CACATCTATTCCAGAGGCCAGTAGAAAAATAAACTTGTTTCGGTCCTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTATTCCAGAGGCCAGTAGAAAAATAAACTTGTTTCGGTCCTTTT  700

seq1  ACATTTTTAAATTAAATGCAATTTGTTACTAGAAAGCAACTAGGATCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTAAATTAAATGCAATTTGTTACTAGAAAGCAACTAGGATCCTG  750

seq1  TTAAATATGTATTTGAAGATTTGATCTTCATTGAAATACTAGCTAGTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGTATTTGAAGATTTGATCTTCATTGAAATACTAGCTAGTTTA  800

seq1  AGCCTCCCATCTTATTTACTCACACTTAATTCTATTTCTATTGGATTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCCATCTTATTTACTCACACTTAATTCTATTTCTATTGGATTCTG  850

seq1  ATTTTCTCAGTAGATAATGAAGGCAATATGTATAGGAACTATAGCACCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCAGTAGATAATGAAGGCAATATGTATAGGAACTATAGCACCTT  900

seq1  AAAGGAGTTCTATAAACATAATCCAGTTTTATAGTTCCTTTCACAACCGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTTCTATAAACATAATCCAGTTTTATAGTTCCTTTCACAACCGT  950

seq1  TCAAATATCATTAATGATTTGAAAGAACACTGCTACCAGACGGTAATATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATCATTAATGATTTGAAAGAACACTGCTACCAGACGGTAATATA  1000

seq1  AAGACCCACTTACCCACTTGGGCAGCCAGCACAAACAATGAATGTGAATT  1049
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGACCCACTTACCCACTTGGGCAGCCAGCACAAAC-ATGAATGTGAATT  1049

seq1  TCCTGACTAAACAAACATGCTCCAGACTTCCTGC-TCTATTGGAGGGAAG  1098
      |||||||| |||||| ||||| ||||||| |||| |||||||||||||||
seq2  TCCTGACT-AACAAA-ATGCTTCAGACTT-CTGCTTCTATTGGAGGGAAG  1096

seq1  ATGCCAAATGTAGGAGGCAGC  1119
      ||||| ||||||||| |||||
seq2  ATGCC-AATGTAGGA-GCAGC  1115

seq1: chr4_15669123_15670313
seq2: B6Ng01-093A13.g_69_1243 (reverse)

seq1  GTGTGTTGACATACAAATAACTGCCACACACTTAGAAGCACACACATTAT  50
      |||||||||| ||| |||||||||||||| ||||| ||||| | ||||||
seq2  GTGTGTTGAC-TAC-AATAACTGCCACAC-CTTAGGAGCAC-CCCATTAT  46

seq1  CATACCCTTGCCATAATCTGTACTTGATGGCTAATGGCATTGGTTACCAA  100
      | |||||||||||||||||||   ||| |||||||||||||||||||| |
seq2  C-TACCCTTGCCATAATCTGT--CTGA-GGCTAATGGCATTGGTTACC-A  91

seq1  GGTCAACTAGGGAATGAATATAATAGGTGTTCCATCTGTAACAGGACCAT  150
      |||  ||| |||||| | |||||||||| |||||||||||||||||||||
seq2  GGTTCACTTGGGAATAATTATAATAGGT-TTCCATCTGTAACAGGACCAT  140

seq1  CCATGTGCATTTAATGTGAAGAACATTGCTGGATCAACTCCTCATTTGCG  200
      |||||||| |||| || |||||||| || ||||||||||||||| |||||
seq2  CCATGTGC-TTTATTG-GAAGAACA-TGGTGGATCAACTCCTCA-TTGCG  186

seq1  TGACACTACATAGTAATTTCTCACCCACCTTCCTGAC-TTATCTGAGAGA  249
       |||||||||| ||||||||||||||||| ||||||| |||||| |||||
seq2  -GACACTACAT-GTAATTTCTCACCCACC-TCCTGACTTTATCT-AGAGA  232

seq1  GTGGAGGCTTTTCAT-ATTCTAAGAAGGATGCTCTAGGACAGTACCAGCA  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCTTTTCATAATTCTAAGAAGGATGCTCTAGGACAGTACCAGCA  282

seq1  TGGTGCGAAGAAGACTAAGACAACTAGTCACCTACATAGGAAGCCTGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCGAAGAAGACTAAGACAACTAGTCACCTACATAGGAAGCCTGGAA  332

seq1  AATAAGAGCTGGCATTCATATCTACACATTGAAACTTTGCATGAGCCAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGCTGGCATTCATATCTACACATTGAAACTTTGCATGAGCCAAG  382

seq1  CAGAAGCCAGAGTTAAGCAGCAAAGAGGTTGAGTGGTTGACAAGTAGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCAGAGTTAAGCAGCAAAGAGGTTGAGTGGTTGACAAGTAGGAT  432

seq1  TTTAAAATGAATAACCATGTTTGGAAAAATGTACTTTCCGATGTTTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGAATAACCATGTTTGGAAAAATGTACTTTCCGATGTTTTTCT  482

seq1  ACCATCCACTTCTAGGGGAAGCAAACCTCTACTTTGTGGATACGCCAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCACTTCTAGGGGAAGCAAACCTCTACTTTGTGGATACGCCAAAT  532

seq1  AGGCATTCATGAATATAAGATGTTTTATACTCCAGTTCAATAATCAAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCATGAATATAAGATGTTTTATACTCCAGTTCAATAATCAAAAG  582

seq1  TGAAAATGGAGTATATTGTACTACATCTGTAAATTTTAGTAGGCCCAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGGAGTATATTGTACTACATCTGTAAATTTTAGTAGGCCCAAAA  632

seq1  CATGTTCATGAAATATCTTTATTATTTTAGAAGATATGTAAGCATTTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCATGAAATATCTTTATTATTTTAGAAGATATGTAAGCATTTTTG  682

seq1  AGAACACAGAGATACTGGCTAGCTTCCTTTCCATCTTTTTCAAGTTTAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGAGATACTGGCTAGCTTCCTTTCCATCTTTTTCAAGTTTAAT  732

seq1  AAGTCAAATAATTATATTGGCTTTTGTACAATTTTGAATTAATGATGGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAATAATTATATTGGCTTTTGTACAATTTTGAATTAATGATGGAA  782

seq1  AATATATAACATGTCTACACACTGAGAAAAGAAGCCTCATGTACAGAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAACATGTCTACACACTGAGAAAAGAAGCCTCATGTACAGAATG  832

seq1  CCCTGGAGGCTGAGTCTTTACTTAATCTTCTTACAGATCTGTAAGACCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGGCTGAGTCTTTACTTAATCTTCTTACAGATCTGTAAGACCTG  882

seq1  TAAGCTGAACCATCTGCTGACATCAGAGCACAAGAACATGGCATACCATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGAACCATCTGCTGACATCAGAGCACAAGAACATGGCATACCATG  932

seq1  TTCCTGTAAAATGCATCGCAAGAAAGGTGATGCTTAACTAAGAGCAAGGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTAAAATGCATCGCAAGAAAGGTGATGCTTAACTAAGAGCAAGGT  982

seq1  GAATGGCTTTAGTCTGACCAGACAGGAGAATGAATAATTTCAAGCAGAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTTTAGTCTGACCAGACAGGAGAATGAATAATTTCAAGCAGAAA  1032

seq1  TTCAGACAGCCTTACAGAATCCTGCATCCTCGGTTTCCTGGAAAGAGCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACAGCCTTACAGAATCCTGCATCCTCGGTTTCCTGGAAAGAGCCC  1082

seq1  ACCCACTGAGCACTTACAGGCTAAACACATGATTTCCTTTCCTTCTTCCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGAGCACTTACAGGCTAAACACATGATTTCCTTTCCTTCTTCCA  1132

seq1  GTGTGTTTTGAAATTTTAAGAGAGAGGGCTTCATGTGGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTGAAATTTTAAGAGAGAGGGCTTCATGTGGAATTC  1175