BAC Information

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BAC

Clone NameB6Ng01-095O03
Chromosome4 (Build37)
Map Location 39,285,890 - 39,425,206
singlet/doubletdoublet
Overlap gene1700009N14Rik
Upstream geneLOC665520, LOC100039487
Downstream geneLOC435775, LOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095O03.bB6Ng01-095O03.g
ACCDH906699DH906700
length1,1531,123
definitionDH906699|Mus musculus domesticus DNA, BAC clone: B6Ng01-095O03, 5' end.DH906700|Mus musculus domesticus DNA, BAC clone: B6Ng01-095O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,285,890 - 39,287,071)(39,424,074 - 39,425,206)
sequence
gaattcagcttactaatttagataggaaaataaagtatctgtttttgttt
cctatgagaagttaagagacttggttatttaatatgtaatccaagccttc
tcagtgctaacttttatcagcaatgttgtttcaattaggaaggtgcaaag
agaaatcagaataggcatttctgaatacaaagaagaaagcatacaagata
aaacattcctctggctctgcttcctgactatgattgtgatgtgactagcg
tggaccactaagactttctcactatgatgaagcatatgagccaaataaac
cctttctttcctaaattgtttttgtcagctacttaatcacagtactagga
aagtaactaagacaaccattgaagcacactcttctttgttaaggaggtgg
aggtgaatttcagttatagaaagaggatagatggagaacattaccaagaa
acttcaaacagcaacatttaatgtaaaccaaaacctgaaggagggaggac
agaaaaaccatattgtttcgtcaatgtgaatactttagctactgtccagc
taaaatgtttccttcaattataaattacctgtggttaggcatcaatgctt
tcaatttttgtttgattttgcattctgaagaaatgaagccaggaagaaaa
cagtcacattgaaaaggactgaaagtaaacattaaatgaagagggttaag
agttggtgacaggatatatgttatttttattatcttcattatttttaaag
aacagaaattaaatgccaaatgtatttcctttgaaacttcattagttttt
actcacctgtcccaaagacagacagaaatgttttgccaatgttctctgat
ccatacacattcccgtggcctcaccaggaacatcacactgtagagctcct
ctgtgttggttctgcttcgtagagctctttcacttagtatgttctgtaaa
ctccactgagttatatacttgtatcatatttaattctcggctcttctctg
tatatctatgtcaatgagaactttcttaaagctgagagctatttacatag
gcatattgcctgtaagactaaacggtggagtatgctaatattctatgggt
ccataagacattaattgatgttatcattccactattagaacatcatatta
cca
gaattctataaaattattaattcatcttaactgcattaactcatgaaagt
tcacctttatgtgaatctacaggaaatatgatcaataggatggggtaatg
ctcaagaattattatattaatttagtaatgacaggacaggcatatcagct
acaagaagtaatcttgagatgaattctctttgggaccttgcttcatagag
ctcacttatcatagaccatgcaaaaacaatggaccacctccaggaactcc
gcctgcttgccttagcctctcctatatggctcctgacaaaatgcaaagaa
tgctttctgctgaatggtattactcttataacattgtaaggatatgcttg
tattttctggggaagtggttgagggaagcaatcacttaaagtcaataaat
ttctttcctatggacagtgaattgtattatgtattttttagctagttttt
aagtaaaccgttctgaactttaatcagattaaatcagtgagagcagggag
agagggaagaaaaggacaagagagctacatgtagtttgttccactcattg
agaacctaggcaggggatttaatccctgaaatctaggttccatcaaaacc
tgttcctagggtagcctgatcttttagtttaagtgagcagtgaatacatg
ccgtacgcagcagctctcttggtttgatatctcatgcagattccctctac
tttcttgactcagctactcatttgaaaaccttctttgggacagattctgc
attttggcttttgtactggaggaattttcagaatatctacctagcgccat
accagaagtagaattaatattttgtatactttcaatattttattcaatat
atatataagaacaaatgtaccaattgtaaattctactttatagatcttag
actgatcactacctatagacaccagatccagagaagagccttgtgggtat
ccctctcatataatgaagccaaggaaatcacactctggggacttccatag
atgcatgttttctcctctcttcaagagtgaaccaaataaatattcctctt
catgcctgtctttttttctaatgctggggtttggtaatttcccagggtct
gtctgtccgtctgacggtctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_39285890_39287071
seq2: B6Ng01-095O03.b_50_1202

seq1  GAATTCAGCTTACTAATTTAGATAGGAAAATAAAGTATCTGTTTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTACTAATTTAGATAGGAAAATAAAGTATCTGTTTTTGTTT  50

seq1  CCTATGAGAAGTTAAGAGACTTGGTTATTTAATATGTAATCCAAGCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAGAAGTTAAGAGACTTGGTTATTTAATATGTAATCCAAGCCTTC  100

seq1  TCAGTGCTAACTTTTATCAGCAATGTTGTTTCAATTAGGAAGGTGCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTAACTTTTATCAGCAATGTTGTTTCAATTAGGAAGGTGCAAAG  150

seq1  AGAAATCAGAATAGGCATTTCTGAATACAAAGAAGAAAGCATACAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAGAATAGGCATTTCTGAATACAAAGAAGAAAGCATACAAGATA  200

seq1  AAACATTCCTCTGGCTCTGCTTCCTGACTATGATTGTGATGTGACTAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCCTCTGGCTCTGCTTCCTGACTATGATTGTGATGTGACTAGCG  250

seq1  TGGACCACTAAGACTTTCTCACTATGATGAAGCATATGAGCCAAATAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCACTAAGACTTTCTCACTATGATGAAGCATATGAGCCAAATAAAC  300

seq1  CCTTTCTTTCCTAAATTGTTTTTGTCAGCTACTTAATCACAGTACTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTCCTAAATTGTTTTTGTCAGCTACTTAATCACAGTACTAGGA  350

seq1  AAGTAACTAAGACAACCATTGAAGCACACTCTTCTTTGTTAAGGAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACTAAGACAACCATTGAAGCACACTCTTCTTTGTTAAGGAGGTGG  400

seq1  AGGTGAATTTCAGTTATAGAAAGAGGATAGATGGAGAACATTACCAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAATTTCAGTTATAGAAAGAGGATAGATGGAGAACATTACCAAGAA  450

seq1  ACTTCAAACAGCAACATTTAATGTAAACCAAAACCTGAAGGAGGGAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAACAGCAACATTTAATGTAAACCAAAACCTGAAGGAGGGAGGAC  500

seq1  AGAAAAACCATATTGTTTCGTCAATGTGAATACTTTAGCTACTGTCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACCATATTGTTTCGTCAATGTGAATACTTTAGCTACTGTCCAGC  550

seq1  TAAAATGTTTCCTTCAATTATAAATTACCTGTGGTTAGGCATCAATGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTTCCTTCAATTATAAATTACCTGTGGTTAGGCATCAATGCTT  600

seq1  TCAATTTTTGTTTGATTTTGCATTCTGAAGAAATGAAGCCAGGAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTTGTTTGATTTTGCATTCTGAAGAAATGAAGCCAGGAAGAAAA  650

seq1  CAGTCACATTGAAAAGGACTGAAAGTAAACATTAAATGAAGAGGGTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACATTGAAAAGGACTGAAAGTAAACATTAAATGAAGAGGGTTAAG  700

seq1  AGTTGGTGACAGGATATATGTTATTTTTATTATCTTCATTATTTTTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTGACAGGATATATGTTATTTTTATTATCTTCATTATTTTTAAAG  750

seq1  AACAGAAATTAAATGCCAAATGTATTTCCTTTGAAACTTCATTAGTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAATTAAATGCCAAATGTATTTCCTTTGAAACTTCATTAGTTTTT  800

seq1  ACTCACCTGTCCCAAAGACAGACAGAAATGTTTTGCCAATGTTCTCTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCTGTCCCAAAGACAGACAGAAATGTTTTGCCAATGTTCTCTGAT  850

seq1  CCATACACATTCCCGTGGCCTCACCAGGAACATCACACTGTAGAGCTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACATTCCCGTGGCCTCACCAGGAACATCACACTGTAGAGCTCCT  900

seq1  CTGTGTTGGTTCTGCTTCGTAGAAGCTCTTTCACTTAGGTTATGTTCTTG  950
      |||||||||||||||||||||| |||||||||||||||  ||||||| ||
seq2  CTGTGTTGGTTCTGCTTCGTAG-AGCTCTTTCACTTAG--TATGTTC-TG  946

seq1  TAAACTCCACTGAGTTAATATACTTGTATCATAATTTTAATTCTCGGCTC  1000
      |||||||||||||||| ||||||||||||||||  |||||||||||||||
seq2  TAAACTCCACTGAGTT-ATATACTTGTATCATA--TTTAATTCTCGGCTC  993

seq1  TTCTCTGTATTATTCTTAATGTCAATTGAGAACTTTCTAAAAGCCTTGAG  1050
      ||||||||||   |||  ||||||| |||||||||||| |||||  ||||
seq2  TTCTCTGTAT--ATCT--ATGTCAA-TGAGAACTTTCTTAAAGC--TGAG  1036

seq1  AGCTA-TTACATAGGCATAATTGCCCTGTAAGACTATACGGT-GAGTATG  1098
      ||||| |||||||||||| |||| |||||||||||| ||||| |||||| 
seq2  AGCTATTTACATAGGCAT-ATTG-CCTGTAAGACTAAACGGTGGAGTAT-  1083

seq1  GCTAATA-TCTATGAGTTCCCCATAAGAACCATTAGATATGGAAATGTGT  1147
      ||||||| |||||| ||   ||||||||  |||||   || |  |||| |
seq2  GCTAATATTCTATGGGT---CCATAAGA--CATTA---ATTG--ATGT-T  1122

seq1  ATCCATTCTCACTATTAGAACTATCAATATTACCA  1182
      || ||||| |||||||||||| ||| |||||||||
seq2  AT-CATTC-CACTATTAGAAC-ATC-ATATTACCA  1153

seq1: chr4_39424074_39425206
seq2: B6Ng01-095O03.g_68_1190 (reverse)

seq1  GAGAGACAGTCAGACAGACAGACAGACACATGGAAAATTACACAAACACA  50
      ||||||| ||||||| ||||||||||| | ||| |||||||  || | ||
seq2  GAGAGACCGTCAGACGGACAGACAGAC-CCTGGGAAATTACCAAACCCCA  49

seq1  GCATATAGAAAAAAAGACAGGCATGAAGA-GAATATTTATTTGGTTCAAC  99
      |||| |||||||||||||||||||||||| ||||||||||||||||||  
seq2  GCAT-TAGAAAAAAAGACAGGCATGAAGAGGAATATTTATTTGGTTCA--  96

seq1  TTCTGTGAAGAGAGGAGAAAACATGCATCTATTGGAAGTCCCCAGAGTGT  149
       ||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCT-TGAAGAGAGGAGAAAACATGCATCTA-TGGAAGTCCCCAGAGTGT  144

seq1  GATTTTCCTTGGCTTCATTATATGAGAGGGAATACCCACAAGGCTCTTCC  199
      || ||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  GA-TTTCCTTGGCTTCATTATATGAGAGGG-ATACCCACAAGGCTCTT-C  191

seq1  TCTGGATCTGGTGTCTATAGGTAGTGATCAGTCTAAGATCTATAAAGTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATCTGGTGTCTATAGGTAGTGATCAGTCTAAGATCTATAAAGTAG  241

seq1  AATTTACAATTGGTACATTTGTTCTTATATATATATTTGAATAAAATTAT  299
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  AATTTACAATTGGTACATTTGTTCTTATATATATA-TTGAATAAAA-TAT  289

seq1  TGAAAGTATACAAAATATTAATTCTACTTCTGGTATGGCGCTAGGTAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTATACAAAATATTAATTCTACTTCTGGTATGGCGCTAGGTAGAT  339

seq1  ATTCTGAAAATTCCTCCAGTACAAAAGCCAAAATGCAGAATCTGTCCCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAAATTCCTCCAGTACAAAAGCCAAAATGCAGAATCTGTCCCAA  389

seq1  AGAAGGTTTTCAAATGAGTAGCTGAGTCAAGAAAGTAGAGGGAATCTGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTTTTCAAATGAGTAGCTGAGTCAAGAAAGTAGAGGGAATCTGCA  439

seq1  TGAGATATCAAACCAAGAGAGCTGCTGCGTACGGCATGTATTCACTGCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATCAAACCAAGAGAGCTGCTGCGTACGGCATGTATTCACTGCTC  489

seq1  ACTTAAACTAAAAGATCAGGCTACCCTAGGAACAGGTTTTGATGGAACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACTAAAAGATCAGGCTACCCTAGGAACAGGTTTTGATGGAACCT  539

seq1  AGATTTCAGGGATTAAATCCCCTGCCTAGGTTCTCAATGAGTGGAACAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCAGGGATTAAATCCCCTGCCTAGGTTCTCAATGAGTGGAACAAA  589

seq1  CTACATGTAGCTCTCTTGTCCTTTTCTTCCCTCTCTCCCTGCTCTCACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTAGCTCTCTTGTCCTTTTCTTCCCTCTCTCCCTGCTCTCACTG  639

seq1  ATTTAATCTGATTAAAGTTCAGAACGGTTTACTTAAAAACTAGCTAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCTGATTAAAGTTCAGAACGGTTTACTTAAAAACTAGCTAAAAA  689

seq1  ATACATAATACAATTCACTGTCCATAGGAAAGAAATTTATTGACTTTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAATACAATTCACTGTCCATAGGAAAGAAATTTATTGACTTTAAG  739

seq1  TGATTGCTTCCCTCAACCACTTCCCCAGAAAATACAAGCATATCCTTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTTCCCTCAACCACTTCCCCAGAAAATACAAGCATATCCTTACA  789

seq1  ATGTTATAAGAGTAATACCATTCAGCAGAAAGCATTCTTTGCATTTTGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATAAGAGTAATACCATTCAGCAGAAAGCATTCTTTGCATTTTGTC  839

seq1  AGGAGCCATATAGGAGAGGCTAAGGCAAGCAGGCGGAGTTCCTGGAGGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCATATAGGAGAGGCTAAGGCAAGCAGGCGGAGTTCCTGGAGGTG  889

seq1  GTCCATTGTTTTTGCATGGTCTATGATAAGTGAGCTCTATGAAGCAAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTGTTTTTGCATGGTCTATGATAAGTGAGCTCTATGAAGCAAGGT  939

seq1  CCCAAAGAGAATTCATCTCAAGATTACTTCTTGTAGCTGATATGCCTGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGAGAATTCATCTCAAGATTACTTCTTGTAGCTGATATGCCTGTC  989

seq1  CTGTCATTACTAAATTAATATAATAATTCTTGAGCATTACCCCATCCTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTACTAAATTAATATAATAATTCTTGAGCATTACCCCATCCTAT  1039

seq1  TGATCATATTTCCTGTAGATTCACATAAAGGTGAACTTTCATGAGTTAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATATTTCCTGTAGATTCACATAAAGGTGAACTTTCATGAGTTAAT  1089

seq1  GCAGTTAAGATGAATTAATAATTTTATAGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAGATGAATTAATAATTTTATAGAATTC  1123