BAC Information

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BAC

Clone NameB6Ng01-097E12
Chromosome4 (Build37)
Map Location 93,588,824 - 93,760,150
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097E12.bB6Ng01-097E12.g
ACCDH907698DH907699
length1,1911,101
definitionDH907698|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E12, 5' end.DH907699|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,588,824 - 93,590,032)(93,759,031 - 93,760,150)
sequence
gaattctttttatcttctcctgaaacactccaactcccaggcatcatact
ctactctaggttgcttgtactgtagttttatttgggtgagtctgtgttct
agacaaaagcaacactttcttgtcgataatgactgattaatcagttgcat
gaataaattagtccttggcgtattatatattgaccctttaatttaatgga
gtaatcaaaaatgacacatctccaaaaatgagcagaacagctccaaagcc
atccatcaatgccaggaagaagaaacacacttaggaagtgtatttcttgt
tcacataaatacataatacatttgtattatttatttatcctgtaccatga
aaaatttttgaaacagtggaaatgagtccaattcagtgaaaagtggctag
atagtgaatgataaataaaattattgaaggatatatgaacaaaaatagaa
atgcatttttatgctaatatattcggttctggagtgttgtggtaaatggc
agccttagcctcttaggtctccaatattgcaattgtttctgaaataacaa
acaagcaaaagtgctttctaatattttccttaattcatagctttgaaatg
agagattccattgatgggagatgggccactgggaagattacctagtgatt
aagatcacttgcatgcataaggagttggccagggattaacttttacccta
agcactatgagagatggagaatgaatcactgagtttgatggctgcccatc
tagctctagctatgggttccgtgggagatcttctctccatgaaataaaga
gaacaatgatccagtttgttgtttttatttttgtttcaagtaggagctcc
agtacccaggctgcccttgaactcaccaatgttgataatcctgcagtcag
atcccattgcctctacttcctgagtactaggagaacaagtctatgcctga
ataaaagggtaccagataaaacccaggattttgtgcatgctaggaaaaca
ttctaagccaactggagccacacccatcaggaatgaaagatatgatagac
ccatagcttcttctggtctctgtgatatatatgacacaaacactcatgac
acatatttgtgcatacctacaacctacctagaaagaaataaagaaagaag
aaagagagaggttctgagtggaaagcgcattttggttaatt
gaattctgtagtttagtaaaaaacataaattagtgactaattatgaatat
atgactagtttttactatggggcttgattgaataaaggtcatggagggag
agaaaaataagtagtctagcttttcagagaaagggagctcttgacagtca
aagcagggtgtcaggaagatttaaatgaacgtggtatttctagcaaagat
gaatgggaaagctttccacatagaggaaatgtcacaagtagcccagagaa
ggcctgcggttcgaggtagttttcacttggggaatggggaatgtcagtgg
ctacatttgtaagctttggagagagggtccttggtcatgtgtagtgagtg
acttagtctggactgcttgagtgtctgaggcactgtactatgactgagga
tacagcagtacatggcagtttgcataccactatctagtaagattctcttt
atattaactagaagttcaggaaagaagaatgaatggaagtgtgaaggaag
agtggggtttcctctaatgtccaggacagagaaatccttagcattatgca
agtatccttagcatctgtcaaattttgtcagtgcttctagcccaagtgaa
taacttagataaaaacatttatttaatatatctaaaatatctttgatttg
tctattgcttagacagtctctgcttttttccctcttttcctttatcttgt
ctcttaccagattttcttttctactaatatctactgagtgagcctgcgat
ccagatacagtgggaaaagctgggctttcagcaatgtgtgaggtgcagtc
tctagtttctgatgacatctcagtaaagctgataaggaccttatagttga
agacaaatgacatgtactgaaggtcaattcctatgcttgtgggttgttca
gtgaaatcagaatgtcactggaggtagcccttcagggacatcttgacgaa
atactaaacttcttgtgttttgactctttttctgtcacacataaagaagg
acttaaaacaatatccatggtgctctcttttggagcatgagcttccaatc
taggcacctttatatcctttagtcaactccatgcatatctgccttatgat
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93588824_93590032
seq2: B6Ng01-097E12.b_46_1236

seq1  GAATTCTTTTTATCTTCTCCTGAAACACTCCAACTCCCAGGCATCATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTATCTTCTCCTGAAACACTCCAACTCCCAGGCATCATACT  50

seq1  CTACTCTAGGTTGCTTGTACTGTAGTTTTATTTGGGTGAGTCTGTGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTAGGTTGCTTGTACTGTAGTTTTATTTGGGTGAGTCTGTGTTCT  100

seq1  AGACAAAAGCAACACTTTCTTGTCGATAATGACTGATTAATCAGTTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAGCAACACTTTCTTGTCGATAATGACTGATTAATCAGTTGCAT  150

seq1  GAATAAATTAGTCCTTGGCGTATTATATATTGACCCTTTAATTTAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATTAGTCCTTGGCGTATTATATATTGACCCTTTAATTTAATGGA  200

seq1  GTAATCAAAAATGACACATCTCCAAAAATGAGCAGAACAGCTCCAAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAAAAATGACACATCTCCAAAAATGAGCAGAACAGCTCCAAAGCC  250

seq1  ATCCATCAATGCCAGGAAGAAGAAACACACTTAGGAAGTGTATTTCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCAATGCCAGGAAGAAGAAACACACTTAGGAAGTGTATTTCTTGT  300

seq1  TCACATAAATACATAATACATTTGTATTATTTATTTATCCTGTACCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAATACATAATACATTTGTATTATTTATTTATCCTGTACCATGA  350

seq1  AAAATTTTTGAAACAGTGGAAATGAGTCCAATTCAGTGAAAAGTGGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTTGAAACAGTGGAAATGAGTCCAATTCAGTGAAAAGTGGCTAG  400

seq1  ATAGTGAATGATAAATAAAATTATTGAAGGATATATGAACAAAAATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAATGATAAATAAAATTATTGAAGGATATATGAACAAAAATAGAA  450

seq1  ATGCATTTTTATGCTAATATATTCGGTTCTGGAGTGTTGTGGTAAATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTTTATGCTAATATATTCGGTTCTGGAGTGTTGTGGTAAATGGC  500

seq1  AGCCTTAGCCTCTTAGGTCTCCAATATTGCAATTGTTTCTGAAATAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAGCCTCTTAGGTCTCCAATATTGCAATTGTTTCTGAAATAACAA  550

seq1  ACAAGCAAAAGTGCTTTCTAATATTTTCCTTAATTCATAGCTTTGAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAAAGTGCTTTCTAATATTTTCCTTAATTCATAGCTTTGAAATG  600

seq1  AGAGATTCCATTGATGGGAGATGGGCCACTGGGAAGATTACCTAGTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCCATTGATGGGAGATGGGCCACTGGGAAGATTACCTAGTGATT  650

seq1  AAGATCACTTGCATGCATAAGGAGTTGGCCAGGGATTAACTTTTACCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCACTTGCATGCATAAGGAGTTGGCCAGGGATTAACTTTTACCCTA  700

seq1  AGCACTATGAGAGATGGAGAATGAATCACTGAGTTTGATGGCTGCCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTATGAGAGATGGAGAATGAATCACTGAGTTTGATGGCTGCCCATC  750

seq1  TAGCTCTAGCTATGGGTTCCGTGGGAGATCTTCTCTCCATGAAATAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTAGCTATGGGTTCCGTGGGAGATCTTCTCTCCATGAAATAAAGA  800

seq1  GAACAATGATCCAGTTTGTTGTTTTTATTTTTGTTTCAAGTAGGAGCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGATCCAGTTTGTTGTTTTTATTTTTGTTTCAAGTAGGAGCTCC  850

seq1  AGTACCCAGGCTGCCCTTGAACTCACCAATGTTGATAATCCTGCAGTTCA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTACCCAGGCTGCCCTTGAACTCACCAATGTTGATAATCCTGCAG-TCA  899

seq1  GATCCCATTGCCTCTACTTCCTGAGTACTAGGAGAACAAGTCTATGCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCATTGCCTCTACTTCCTGAGTACTAGGAGAACAAGTCTATGCCTG  949

seq1  AATAAAAGGGTACCAAGATAAAACCCAGGATTTTGTGCATGCTAGGAAAA  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGGTACC-AGATAAAACCCAGGATTTTGTGCATGCTAGGAAAA  998

seq1  CATTCTAAGCCAACT-GAGCCACAACCCCATCAAGAATGAAAGATTAGGA  1049
      ||||||||||||||| ||||||||  ||||||| |||||||||| || ||
seq2  CATTCTAAGCCAACTGGAGCCACA--CCCATCAGGAATGAAAGA-TATGA  1045

seq1  TAGACCCATAGCTTCTTCTGGTCTCTGTGATTATATATGGACACAAACAC  1099
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  TAGACCCATAGCTTCTTCTGGTCTCTGTGA-TATATAT-GACACAAACAC  1093

seq1  CTTCATGGACACATATTTGTGCATA-CTACACACCTACACTTAGAAAAAG  1148
        |||| |||||||||||||||||| ||||| |||||| ||   | ||||
seq2  --TCAT-GACACATATTTGTGCATACCTACA-ACCTAC-CT---AGAAAG  1135

seq1  AAATAAGAGAAGGAAGAAGAGGAGAAGTTTTCTGAGTGAGAAAACGCATT  1198
      |||||| |||| ||||||   |||| |  ||||||||| |||| |||| |
seq2  AAATAA-AGAAAGAAGAAAGAGAGAGG--TTCTGAGTG-GAAAGCGCA-T  1180

seq1  TTTGTTTAATT  1209
      |||| ||||||
seq2  TTTGGTTAATT  1191

seq1: chr4_93759031_93760150
seq2: B6Ng01-097E12.g_69_1169 (reverse)

seq1  CATCATAA-GCAGATATGCATGTGAAGGTTGGACTAAAGGGAATATCAGG  49
      |||||||| ||||||||||||| ||  ||| |||||||||  |||| | |
seq2  CATCATAAGGCAGATATGCATG-GA--GTT-GACTAAAGG--ATATAAAG  44

seq1  TGGCCATGATTTGGAAGTCAAATGCTCCAAAAAGGAGAAGCA-CATGGAT  98
        |||  || ||||||| |  |||||||||||  ||| |||| |||||||
seq2  GTGCCTAGA-TTGGAAG-CTCATGCTCCAAAA--GAG-AGCACCATGGAT  89

seq1  TTTGTTTTTAGTCTTTCTTTATGTGGTTGACAGAAAAAGAGTCAAAACAC  148
       ||||||| |||| |||||||||||  |||||||||||||||||||||||
seq2  ATTGTTTTAAGTCCTTCTTTATGTG--TGACAGAAAAAGAGTCAAAACAC  137

seq1  AAAGAAGTTTTAGTAATTTCGTCAAGATGTCCCCTGAAGGGCTACCTCCA  198
       |||||| |||||| ||||||||||||||| |||||||||||||||||||
seq2  -AAGAAG-TTTAGT-ATTTCGTCAAGATGT-CCCTGAAGGGCTACCTCCA  183

seq1  GTGACATTTCTGAATTTCACTGAAACAACCCACAAGCATAGGAATTGACC  248
      |||||| ||||| ||||||||| |||||||||||||||||||||||||||
seq2  GTGACA-TTCTG-ATTTCACTG-AACAACCCACAAGCATAGGAATTGACC  230

seq1  TTCAGTTACATGTCATTTGTCTTCAACTATAAGGTCCTTATCAGCTTTAC  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAG-TACATGTCATTTGTCTTCAACTATAAGGTCCTTATCAGCTTTAC  279

seq1  TGAGATGTCATCAGAAACTAGAGACTGCACCTCACACATTGCTGAAAGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTCATCAGAAACTAGAGACTGCACCTCACACATTGCTGAAAGCC  329

seq1  CAGCTTTTCCCACTGTATCTGGATCGCAGGCTCACTCAGTAGATATTAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTCCCACTGTATCTGGATCGCAGGCTCACTCAGTAGATATTAGT  379

seq1  AGAAAAGAAAATCTGGTAAGAGACAAGATAAAGGAAAAGAGGGAAAAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAATCTGGTAAGAGACAAGATAAAGGAAAAGAGGGAAAAAAG  429

seq1  CAGAGACTGTCTAAGCAATAGACAAATCAAAGATATTTTAGATATATTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTGTCTAAGCAATAGACAAATCAAAGATATTTTAGATATATTAA  479

seq1  ATAAATGTTTTTATCTAAGTTATTCACTTGGGCTAGAAGCACTGACAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTTTTATCTAAGTTATTCACTTGGGCTAGAAGCACTGACAAAA  529

seq1  TTTGACAGATGCTAAGGATACTTGCATAATGCTAAGGATTTCTCTGTCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGATGCTAAGGATACTTGCATAATGCTAAGGATTTCTCTGTCCT  579

seq1  GGACATTAGAGGAAACCCCACTCTTCCTTCACACTTCCATTCATTCTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTAGAGGAAACCCCACTCTTCCTTCACACTTCCATTCATTCTTCT  629

seq1  TTCCTGAACTTCTAGTTAATATAAAGAGAATCTTACTAGATAGTGGTATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAACTTCTAGTTAATATAAAGAGAATCTTACTAGATAGTGGTATG  679

seq1  CAAACTGCCATGTACTGCTGTATCCTCAGTCATAGTACAGTGCCTCAGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGCCATGTACTGCTGTATCCTCAGTCATAGTACAGTGCCTCAGAC  729

seq1  ACTCAAGCAGTCCAGACTAAGTCACTCACTACACATGACCAAGGACCCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCAGTCCAGACTAAGTCACTCACTACACATGACCAAGGACCCTC  779

seq1  TCTCCAAAGCTTACAAATGTAGCCACTGACATTCCCCATTCCCCAAGTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAAGCTTACAAATGTAGCCACTGACATTCCCCATTCCCCAAGTGA  829

seq1  AAACTACCTCGAACCGCAGGCCTTCTCTGGGCTACTTGTGACATTTCCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCTCGAACCGCAGGCCTTCTCTGGGCTACTTGTGACATTTCCTC  879

seq1  TATGTGGAAAGCTTTCCCATTCATCTTTGCTAGAAATACCACGTTCATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGAAAGCTTTCCCATTCATCTTTGCTAGAAATACCACGTTCATTT  929

seq1  AAATCTTCCTGACACCCTGCTTTGACTGTCAAGAGCTCCCTTTCTCTGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCCTGACACCCTGCTTTGACTGTCAAGAGCTCCCTTTCTCTGAA  979

seq1  AAGCTAGACTACTTATTTTTCTCTCCCTCCATGACCTTTATTCAATCAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGACTACTTATTTTTCTCTCCCTCCATGACCTTTATTCAATCAAG  1029

seq1  CCCCATAGTAAAAACTAGTCATATATTCATAATTAGTCACTAATTTATGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGTAAAAACTAGTCATATATTCATAATTAGTCACTAATTTATGT  1079

seq1  TTTTTACTAAACTACAGAATTC  1120
      ||||||||||||||||||||||
seq2  TTTTTACTAAACTACAGAATTC  1101