BAC Information

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BAC

Clone NameB6Ng01-097J02
Chromosome4 (Build37)
Map Location 118,755,172 - 118,792,561
singlet/doubletdoublet
Overlap geneSlc2a1
Upstream geneSt3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833
Downstream geneZfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097J02.bB6Ng01-097J02.g
ACCDH907909DH907910
length1,155891
definitionDH907909|Mus musculus domesticus DNA, BAC clone: B6Ng01-097J02, 5' end.DH907910|Mus musculus domesticus DNA, BAC clone: B6Ng01-097J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,791,404 - 118,792,561)(118,755,172 - 118,756,061)
sequence
gaattcttgcaggctagctgggtttccctgccccactgcctccctaccct
ccatgtgcctatctgcaaaatgggaacagtcacattgttcagcactggag
acatgaccctgcccttctctagccttcctacccttcactggggagaaaac
aaaagttcttgagagctcagagcaagagatcaaagttccaatctactcag
gggtctgcagcagcgtcaggatcagaatacagggccctggagtcctcact
gagtgctcctcacaccaacgcccccacccctaccccctgcaaaccatgag
ctttcatttcagggtgaattgtaccagataacagaaatacgattcaaaaa
gtacatgacccgaagtgactaagggacaaagggttgaaggcagcaggaag
ggataaggccagcaggtgaaagggcctgtttacacagaggtggaaggcca
gtgaggtgtccacctgaatagacaaagttagggactctccagctcttcaa
acgaagaagccaagaaatataacttgaggcaggcccttgactggctgtgg
gaaaagagagctggggactcatgccaaaaccaaagaaatagaccagcatc
tacggatgcagaacacccgcatggcgctgggctgggcgattcgggtccaa
gagggaagcctaagatcaggagccgtgcgagactctgtctaggatagtgt
gtgatagttttagctgggtttcagccttgtgtgagcgtctgggcctgtct
ccccacagtacccagaagctgccctgacttctagattgttagatagagct
gggcgtagcccttaagcagacttgttcccaggtcttctcattttccagaa
gcctgaaagacaaggactgcctaagctatagttctcacatgatactctga
gaaagaggaaggcctgtgtctgctccagtggacacagaatgttggagcct
gccttcgaatggtctgtctgtctggttctccttgactgaccttgcaagtc
atttcttactgcgccacttcccttcactcccatcctctgtgaactcagtc
aaaggcatgggcctctccatctcctgtctcccagctctctaggggagctc
cagacccagtgcctgcgggttgagtgggccaggagttacatgacagctct
gggag
gaattccccaacattagcctcccctcatccatgaggttggtccattgtga
ctacgctcgtcataatacctctgagctttctgttgatgacccatgcatat
gattacactaatacccatctgactgaatcagcccaaatggctgggcactt
gtttcttgccaactagcagctctgtactagaaactgtcagttggagttct
agctcatgactaagggtcaggctaagataggacttaggattctggccacg
aaagatgaaactcaagctactacttggcttgtgtgtgatactccatgggt
aagtgatcaggatatgttgtcaaataaagaaatgaatgaaaaccagctta
gacgagaggagtctgtttttggcttccggtgactcagcagatgttatcag
gaatggggaagtgggtctctcctggatttgctctgacctctgcagggtca
tacacaggcttccagccacccatcagacaaggactttctttcctcctctg
taccattccacagcagggaattctccctagcaacagccacagaaaacaag
agcccacttctctttctctcaaaagctacaacttccttttccctggctcc
aatttggttcagggccaaaattttgattggctgaaatccattaactcttt
gtggttctgtagagtagactcttttctataggaagtttcagacacagtgg
ctcaaagtattactagagggaccatgcaatggtattgttttaaagtgttt
taaatgcatatacatgattaaaactataaaacatagagagatggcttggt
ggttaagagcacttgtcgcaagctgggtgtgggtggcacacaccttttaa
tcccagactcgtggaggcatagcaggcggatttctgagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118791404_118792561
seq2: B6Ng01-097J02.b_46_1200 (reverse)

seq1  CTCCCAGAAGCTTGTCATGT-ACTCCCTGCCCACTCACCCCGCA-GCACT  48
      ||||||| ||| |||||||| |||||  ||||||||| |||||| |||||
seq2  CTCCCAG-AGC-TGTCATGTAACTCCTGGCCCACTCAACCCGCAGGCACT  48

seq1  GGGTCTGGAGGCTCCCTAGAGAGCTGGGAGACAGGAGATGTGAGAGG-CC  97
      ||||||||||   ||||||||||||||||||||||||||| |||||| ||
seq2  GGGTCTGGAGCTCCCCTAGAGAGCTGGGAGACAGGAGATG-GAGAGGCCC  97

seq1  ATGCCTTTTGACTGAGTTCACAGAGGATGGGAGTTGAAGGGAAGTGGCGC  147
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGCC-TTTGACTGAGTTCACAGAGGATGGGAG-TGAAGGGAAGTGGCGC  145

seq1  AGTAAAGAATGACTTTGCAAGGTCAGTCAAGGAGAAACAGACAGACAGAC  197
      |||||  |||||| |||||||||||||||||||||| |||||||||||||
seq2  AGTAAGAAATGAC-TTGCAAGGTCAGTCAAGGAGAACCAGACAGACAGAC  194

seq1  CATTCGAAGGCAGGCTCCAACATTCTGTGTCCACTGGAGCAGACACAGGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGAAGGCAGGCTCCAACATTCTGTGTCCACTGGAGCAGACACAGGC  244

seq1  CTTCCTCTTTCTCAGAGTTTCATGTGAGAACTATAGCTTTGGCAGTCCTT  297
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  CTTCCTCTTTCTCAGAGTATCATGTGAGAACTATAGCTTAGGCAGTCCTT  294

seq1  GTCTTTCAGGCTTCTGGAAAATGAGAAGACCTGGGAACAAGTCTGCTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCAGGCTTCTGGAAAATGAGAAGACCTGGGAACAAGTCTGCTTAA  344

seq1  GGGCTACGCCCAGCTCTATCTAACAATCTAGAAGTCAGGGCAGCTTCTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACGCCCAGCTCTATCTAACAATCTAGAAGTCAGGGCAGCTTCTGG  394

seq1  GTACTGTGGGGAGACAGGCCCAGACGCTCACACAAGGCTGAAACCCAGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTGGGGAGACAGGCCCAGACGCTCACACAAGGCTGAAACCCAGCT  444

seq1  AAAACTATCACACACTATCCTAGACAGAGTCTCGCACGGCTCCTGATCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATCACACACTATCCTAGACAGAGTCTCGCACGGCTCCTGATCTT  494

seq1  AGGCTTCCCTCTTGGACCCGAATCGCCCAGCCCAGCGCCATGCGGGTGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCCCTCTTGGACCCGAATCGCCCAGCCCAGCGCCATGCGGGTGTT  544

seq1  CTGCATCCGTAGATGCTGGTCTATTTCTTTGGTTTTGGCATGAGTCCCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCGTAGATGCTGGTCTATTTCTTTGGTTTTGGCATGAGTCCCCA  594

seq1  GCTCTCTTTTCCCACAGCCAGTCAAGGGCCTGCCTCAAGTTATATTTCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTTTCCCACAGCCAGTCAAGGGCCTGCCTCAAGTTATATTTCTT  644

seq1  GGCTTCTTCGTTTGAAGAGCTGGAGAGTCCCTAACTTTGTCTATTCAGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTCGTTTGAAGAGCTGGAGAGTCCCTAACTTTGTCTATTCAGGT  694

seq1  GGACACCTCACTGGCCTTCCACCTCTGTGTAAACAGGCCCTTTCACCTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCTCACTGGCCTTCCACCTCTGTGTAAACAGGCCCTTTCACCTGC  744

seq1  TGGCCTTATCCCTTCCTGCTGCCTTCAACCCTTTGTCCCTTAGTCACTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTATCCCTTCCTGCTGCCTTCAACCCTTTGTCCCTTAGTCACTTC  794

seq1  GGGTCATGTACTTTTTGAATCGTATTTCTGTTATCTGGTACAATTCACCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATGTACTTTTTGAATCGTATTTCTGTTATCTGGTACAATTCACCC  844

seq1  TGAAATGAAAGCTCATGGTTTGCAGGGGGTAGGGGTGGGGGCGTTGGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAAAGCTCATGGTTTGCAGGGGGTAGGGGTGGGGGCGTTGGTGT  894

seq1  GAGGAGCACTCAGTGAGGACTCCAGGGCCCTGTATTCTGATCCTGACGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCACTCAGTGAGGACTCCAGGGCCCTGTATTCTGATCCTGACGCT  944

seq1  GCTGCAGACCCCTGAGTAGATTGGAACTTTGATCTCTTGCTCTGAGCTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGACCCCTGAGTAGATTGGAACTTTGATCTCTTGCTCTGAGCTCT  994

seq1  CAAGAACTTTTGTTTTCTCCCCAGTGAAGGGTAGGAAGGCTAGAGAAGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTTTTGTTTTCTCCCCAGTGAAGGGTAGGAAGGCTAGAGAAGGG  1044

seq1  CAGGGTCATGTCTCCAGTGCTGAACAATGTGACTGTTCCCATTTTGCAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCATGTCTCCAGTGCTGAACAATGTGACTGTTCCCATTTTGCAGA  1094

seq1  TAGGCACATGGAGGGTAGGGAGGCAGTGGGGCAGGGAAACCCAGCTAGCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACATGGAGGGTAGGGAGGCAGTGGGGCAGGGAAACCCAGCTAGCC  1144

seq1  TGCAAGAATTC  1158
      |||||||||||
seq2  TGCAAGAATTC  1155

seq1: chr4_118755172_118756061
seq2: B6Ng01-097J02.g_68_958

seq1  GAATTCCCCAACATTAGCCTCCCCTCATCCATGAGGTTGGTCCATTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAACATTAGCCTCCCCTCATCCATGAGGTTGGTCCATTGTGA  50

seq1  CTACGCTCGTCATAATACCTCTGAGCTTTCTGTTGATGACCCATGCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGCTCGTCATAATACCTCTGAGCTTTCTGTTGATGACCCATGCATAT  100

seq1  GATTACACTAATACCCATCTGACTGAATCAGCCCAAATGGCTGGGCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACACTAATACCCATCTGACTGAATCAGCCCAAATGGCTGGGCACTT  150

seq1  GTTTCTTGCCAACTAGCAGCTCTGTACTAGAAACTGTCAGTTGGAGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGCCAACTAGCAGCTCTGTACTAGAAACTGTCAGTTGGAGTTCT  200

seq1  AGCTCATGACTAAGGGTCAGGCTAAGATAGGACTTAGGATTCTGGCCACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATGACTAAGGGTCAGGCTAAGATAGGACTTAGGATTCTGGCCACG  250

seq1  AAAGATGAAACTCAAGCTACTACTTGGCTTGTGTGTGATACTCCATGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAAACTCAAGCTACTACTTGGCTTGTGTGTGATACTCCATGGGT  300

seq1  AAGTGATCAGGATATGTTGTCAAATAAAGAAATGAATGAAAACCAGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATCAGGATATGTTGTCAAATAAAGAAATGAATGAAAACCAGCTTA  350

seq1  GACGAGAGGAGTCTGTTTTTGGCTTCCGGTGACTCAGCAGATGTTATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGAGGAGTCTGTTTTTGGCTTCCGGTGACTCAGCAGATGTTATCAG  400

seq1  GAATGGGGAAGTGGGTCTCTCCTGGATTTGCTCTGACCTCTGCAGGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGGAAGTGGGTCTCTCCTGGATTTGCTCTGACCTCTGCAGGGTCA  450

seq1  TACACAGGCTTCCAGCCACCCATCAGACAAGGACTTTCTTTCCTCCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGCTTCCAGCCACCCATCAGACAAGGACTTTCTTTCCTCCTCTG  500

seq1  TACCATTCCACAGCAGGGAATTCTCCCTAGCAACAGCCACAGAAAACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTCCACAGCAGGGAATTCTCCCTAGCAACAGCCACAGAAAACAAG  550

seq1  AGCCCACTTCTCTTTCTCTCAAAAGCTACAACTTCCTTTTCCCTGGCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACTTCTCTTTCTCTCAAAAGCTACAACTTCCTTTTCCCTGGCTCC  600

seq1  AATTTGGTTCAGGGCCAAAATTTTGATTGGCTGAAATCCATTAACTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTTCAGGGCCAAAATTTTGATTGGCTGAAATCCATTAACTCTTT  650

seq1  GTGGTTCTGTAGAGTAGACTCTTTTCTATAGGAAGTTTCAGACACAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCTGTAGAGTAGACTCTTTTCTATAGGAAGTTTCAGACACAGTGG  700

seq1  CTCAAAGTATTACTAGAGGGACCATGCAATGGTATTGTTTTAAAGTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTATTACTAGAGGGACCATGCAATGGTATTGTTTTAAAGTGTTT  750

seq1  TAAATGCATATACATGATTAAAACTATAAAACATAGAGAGATGGCTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCATATACATGATTAAAACTATAAAACATAGAGAGATGGCTTGGT  800

seq1  GGTTAAGAGCACTTGTCGCAAGCTGGGTGT-GGTGGCACACACC-TTTAA  848
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  GGTTAAGAGCACTTGTCGCAAGCTGGGTGTGGGTGGCACACACCTTTTAA  850

seq1  TCCCAGCACTCG-GGAGGCAGAGGCAGGCGGATTTCTGAGTTC  890
      |||||| ||||| ||||||| | ||||||||||||||||||||
seq2  TCCCAG-ACTCGTGGAGGCATA-GCAGGCGGATTTCTGAGTTC  891