BAC Information

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BAC

Clone NameB6Ng01-098C06
Chromosome4 (Build37)
Map Location 92,367,809 - 92,534,468
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098C06.bB6Ng01-098C06.g
ACCDH908316DH908317
length1,1101,171
definitionDH908316|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C06, 5' end.DH908317|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,533,339 - 92,534,468)(92,367,809 - 92,369,000)
sequence
gaattccatcaatattataacttctcaaagaacaatggtataaagaaaat
gtaaaatgaaatgtgggtttagagtaaaaaataatttaatcatgtataac
aaaattaaacactatattgtaattaatctttatattattttgtggtatta
gactatctgtgtttatgtttccctagtaagtctttctgcttatcagttac
aaaaatgaaattctgtgcctgttgtccttgcaattatttagtgctcacaa
tgacagagctttatggagaataatttcattcttccaatgtcacccaaggt
ggctcaaggcctttactttcttttcctatagtatttattttaaatgataa
ttaactgaatacttatgttcaaacttcataatgtctcctacaaaacatga
cagcagaaacaatgcatatttattcttgatgtatataaattataccagtg
tcattgagagatgttcaataagtacttgattactgagtaaagaagttgtt
tattgtctatattaataatgctggcctcaaaaagaaggatcatgtcacta
gttctgacttttgttatgaatcttaacacttatattagcagaaaatgtat
aaaatatatgataggaatggttcctcaaacaagacaaccttttaataaat
atttacctgtaaaggaaaagttgaacctttttctaggcaattgttttaca
aatttctgttgaacatgtctcttgcatatgtggtttatttcttttttctg
ttataataatgttaagctgggattgaaagtgcaggcttgtgatccgaaca
cttgagagtaggaggtagaaaagcatcaattgtaggtcaacatggactac
gtgatgagtgccctgcctcctaggcttcataaagacctggtctctcacaa
caaatcaaacgaaacaaatgaaaaaaaaaccagcaatattagactactct
ccagttatgccctcagaaacatagtatttagtaacaactgcctttcatat
ttaagaaatgggttaaaataatttagatagctgaaggtggatttgagctg
tatagctggagaatggtggtagacctgtagaattgagaggagtgagcatt
tgatcagaat
gaattctgtctggaaatggaatgggctttttcaacaattgggcaagtatt
ctcaaacaaactacaaaggttctgtatcatctaataactgaccaaattat
aaggagttatacacttgacttaaatttttgttattccatggcttaaggga
gaaacatttgccatccaaatgggatagatgccttataaattttttaacta
atattttgtaatttgctcaaaaacaaacacttacctctatttttgattcc
tgcccatcaccccaattccccacccttacattccttaaaccattctactg
ctggtgttcattccttctctatactttcaaacaacctatcatctactgac
atctttcctttgaggtatcccctaatggttgctttccagttctctggcaa
gtactaccacttaaatacacggttgtaaatatttagggtcatgctccaca
tatgggagataacagtacctctgtttttcttttctgaattgcctcataga
gtatcttttctaaatgtgaaggaaatgggaacccatggtactacttttat
tttaatgtaacatttcgttgcatttaactcactagtaacgtcaaagtcac
atatatttcaaataaggacttgatattttgattgggaatttagaattcta
tataaatcacaatgcctcttttaagcaaaggtttaagatatttacttcca
tatactttgtctttgccaatgttgtttttatttctctttttggtatgcta
atataattacagcatttgtactttcccttttctccttccaaacttcccca
aatacccatctttactgcctttcaaatgcatggcctcaatttctttcaga
ggtataatttttaggtattagaaaaccaattggtacactatgtcctaggg
aagactatatctctggctctgcattccttacttgttttcagttcattgtc
tatagcagagactagttgtccttcctctatctactttgcttatctatcat
tgttgtccttgttctactcatgatgtgtattcatgttctacgctttatga
atgtagctcttaattacagcatttgttcacaacaactcaatacgtctttg
taccccgaaagaaacattaaaaaatctgtcttaaaaaaatatttatctta
tcgtcatggaccctctcatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_92533339_92534468
seq2: B6Ng01-098C06.b_47_1156 (reverse)

seq1  ATTCTGATCATATTGCTCACTCACTTCTC-CAATTCTTACCAGGTCTACC  49
      |||||||||| | |||||||||    ||| |||||||   ||||||||||
seq2  ATTCTGATCA-AATGCTCACTC----CTCTCAATTCT--ACAGGTCTACC  43

seq1  ACCATTCTCCAGCCTATTACAGCTCCAAATCCACCTTCCAGCTATCCTAA  99
      |||||||||||| ||| ||||||| |||||||||||| ||||||| ||||
seq2  ACCATTCTCCAG-CTA-TACAGCT-CAAATCCACCTT-CAGCTAT-CTAA  88

seq1  ATTATTTTAACCCATTTCTTAAATATGAAAAGGCAGTTTGTTTAACTAAA  149
      ||||||||||||||||||||||||||| |||||||| |||||  ||||||
seq2  ATTATTTTAACCCATTTCTTAAATATG-AAAGGCAG-TTGTT--ACTAAA  134

seq1  TACTTATGTTTCTGAGGGCATAACTGGAGAGTAGTCTAATATTTGCTGGT  199
      ||| ||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  TAC-TATGTTTCTGAGGGCATAACTGGAGAGTAGTCTAATA-TTGCTGG-  181

seq1  TTTTTTTTTCATTTTGTTTCGTTTTGATTTGTTGTGAGAGACCAGGTCTT  249
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  TTTTTTTTTCA-TTTGTTTCG-TTTGATTTGTTGTGAGAGACCAGGTCTT  229

seq1  TATGAAGCCTAGGAGGCAGGGCACTCATCACGTAGTCCATGTTGACCTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCCTAGGAGGCAGGGCACTCATCACGTAGTCCATGTTGACCTAC  279

seq1  AATTGATGCTTTTCTACCTCCTACTCTCAAGTGTTCGGATCACAAGCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGCTTTTCTACCTCCTACTCTCAAGTGTTCGGATCACAAGCCTG  329

seq1  CACTTTCAATCCCAGCTTAACATTATTATAACAGAAAAAAGAAATAAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAATCCCAGCTTAACATTATTATAACAGAAAAAAGAAATAAACC  379

seq1  ACATATGCAAGAGACATGTTCAACAGAAATTTGTAAAACAATTGCCTAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCAAGAGACATGTTCAACAGAAATTTGTAAAACAATTGCCTAGA  429

seq1  AAAAGGTTCAACTTTTCCTTTACAGGTAAATATTTATTAAAAGGTTGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTCAACTTTTCCTTTACAGGTAAATATTTATTAAAAGGTTGTCT  479

seq1  TGTTTGAGGAACCATTCCTATCATATATTTTATACATTTTCTGCTAATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGGAACCATTCCTATCATATATTTTATACATTTTCTGCTAATAT  529

seq1  AAGTGTTAAGATTCATAACAAAAGTCAGAACTAGTGACATGATCCTTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTAAGATTCATAACAAAAGTCAGAACTAGTGACATGATCCTTCTT  579

seq1  TTTGAGGCCAGCATTATTAATATAGACAATAAACAACTTCTTTACTCAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAGCATTATTAATATAGACAATAAACAACTTCTTTACTCAGT  629

seq1  AATCAAGTACTTATTGAACATCTCTCAATGACACTGGTATAATTTATATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTACTTATTGAACATCTCTCAATGACACTGGTATAATTTATATA  679

seq1  CATCAAGAATAAATATGCATTGTTTCTGCTGTCATGTTTTGTAGGAGACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGAATAAATATGCATTGTTTCTGCTGTCATGTTTTGTAGGAGACA  729

seq1  TTATGAAGTTTGAACATAAGTATTCAGTTAATTATCATTTAAAATAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTTTGAACATAAGTATTCAGTTAATTATCATTTAAAATAAATA  779

seq1  CTATAGGAAAAGAAAGTAAAGGCCTTGAGCCACCTTGGGTGACATTGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGAAAAGAAAGTAAAGGCCTTGAGCCACCTTGGGTGACATTGGAA  829

seq1  GAATGAAATTATTCTCCATAAAGCTCTGTCATTGTGAGCACTAAATAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAATTATTCTCCATAAAGCTCTGTCATTGTGAGCACTAAATAATT  879

seq1  GCAAGGACAACAGGCACAGAATTTCATTTTTGTAACTGATAAGCAGAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACAACAGGCACAGAATTTCATTTTTGTAACTGATAAGCAGAAAG  929

seq1  ACTTACTAGGGAAACATAAACACAGATAGTCTAATACCACAAAATAATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTAGGGAAACATAAACACAGATAGTCTAATACCACAAAATAATAT  979

seq1  AAAGATTAATTACAATATAGTGTTTAATTTTGTTATACATGATTAAATTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTAATTACAATATAGTGTTTAATTTTGTTATACATGATTAAATTA  1029

seq1  TTTTTTACTCTAAACCCACATTTCATTTTACATTTTCTTTATACCATTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACTCTAAACCCACATTTCATTTTACATTTTCTTTATACCATTGT  1079

seq1  TCTTTGAGAAGTTATAATATTGATGGAATTC  1130
      |||||||||||||||||||||||||||||||
seq2  TCTTTGAGAAGTTATAATATTGATGGAATTC  1110

seq1: chr4_92367809_92369000
seq2: B6Ng01-098C06.g_66_1236

seq1  GAATTCTGTCTGGAAATGGAATGGGCTTTTTCAACAATTGGGCAAGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGGAAATGGAATGGGCTTTTTCAACAATTGGGCAAGTATT  50

seq1  CTCAAACAAACTACAAAGGTTCTGTATCATCTAATAACTGACCAAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAAACTACAAAGGTTCTGTATCATCTAATAACTGACCAAATTAT  100

seq1  AAGGAGTTATACACTTGACTTAAATTTTTGTTATTCCATGGCTTAAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTATACACTTGACTTAAATTTTTGTTATTCCATGGCTTAAGGGA  150

seq1  GAAACATTTGCCATCCAAATGGGATAGATGCCTTATAAATTTTTTAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTTGCCATCCAAATGGGATAGATGCCTTATAAATTTTTTAACTA  200

seq1  ATATTTTGTAATTTGCTCAAAAACAAACACTTACCTCTATTTTTGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTAATTTGCTCAAAAACAAACACTTACCTCTATTTTTGATTCC  250

seq1  TGCCCATCACCCCAATTCCCCACCCTTACATTCCTTAAACCATTCTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATCACCCCAATTCCCCACCCTTACATTCCTTAAACCATTCTACTG  300

seq1  CTGGTGTTCATTCCTTCTCTATACTTTCAAACAACCTATCATCTACTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTCATTCCTTCTCTATACTTTCAAACAACCTATCATCTACTGAC  350

seq1  ATCTTTCCTTTGAGGTATCCCCTAATGGTTGCTTTCCAGTTCTCTGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCTTTGAGGTATCCCCTAATGGTTGCTTTCCAGTTCTCTGGCAA  400

seq1  GTACTACCACTTAAATACACGGTTGTAAATATTTAGGGTCATGCTCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACCACTTAAATACACGGTTGTAAATATTTAGGGTCATGCTCCACA  450

seq1  TATGGGAGATAACAGTACCTCTGTTTTTCTTTTCTGAATTGCCTCATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAGATAACAGTACCTCTGTTTTTCTTTTCTGAATTGCCTCATAGA  500

seq1  GTATCTTTTCTAAATGTGAAGGAAATGGGAACCCATGGTACTACTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTTCTAAATGTGAAGGAAATGGGAACCCATGGTACTACTTTTAT  550

seq1  TTTAATGTAACATTTCGTTGCATTTAACTCACTAGTAACGTCAAAGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTAACATTTCGTTGCATTTAACTCACTAGTAACGTCAAAGTCAC  600

seq1  ATATATTTCAAATAAGGACTTGATATTTTGATTGGGAATTTAGAATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCAAATAAGGACTTGATATTTTGATTGGGAATTTAGAATTCTA  650

seq1  TATAAATCACAATGCCTCTTTTAAGCAAAGGTTTAAGATATTTACTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATCACAATGCCTCTTTTAAGCAAAGGTTTAAGATATTTACTTCCA  700

seq1  TATACTTTGTCTTTGCCAATGTTGTTTTTATTTCTCTTTTTGGTATGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTGTCTTTGCCAATGTTGTTTTTATTTCTCTTTTTGGTATGCTA  750

seq1  ATATAATTACAGCATTTGTACTTTCCCTTTTCTCCTTCCAAACTTCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTACAGCATTTGTACTTTCCCTTTTCTCCTTCCAAACTTCCCCA  800

seq1  AATACCCATCTTTACTGCCTTTCAAATGCATGGCCTCAATTTCTTTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCATCTTTACTGCCTTTCAAATGCATGGCCTCAATTTCTTTCAGA  850

seq1  GGTATAATTTTTAGGTATTAGAAAACCAATTGGTACACTATGTCCTAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAATTTTTAGGTATTAGAAAACCAATTGGTACACTATGTCCTAGGG  900

seq1  AAGACTATATCTCTGGCTCTGCATTCCTTACTTGTTTTCAGTTCATTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTATATCTCTGGCTCTGCATTCCTTACTTGTTTTCAGTTCATTGTC  950

seq1  TATAGCAAGAGACTAGTTGTCCTTCCTCTATCTACTTTGGCTTATCTATC  1000
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  TATAGC-AGAGACTAGTTGTCCTTCCTCTATCTACTTT-GCTTATCTATC  998

seq1  ATTGTTGTCCTTGTTCTACTCATGATTGTGTATTCATGTTTCTACGCCTT  1050
      ||||||||||||||||||||||||| |||||||||||| ||||||| |||
seq2  ATTGTTGTCCTTGTTCTACTCATGA-TGTGTATTCATG-TTCTACG-CTT  1045

seq1  TATGAATGTAGCTCTTTAAATTACCAGCATTGTGTCACAACAAACTCCAT  1100
      ||||||||||||||||  ||||| |||||||   ||||||| ||||| ||
seq2  TATGAATGTAGCTCTT--AATTA-CAGCATTTGTTCACAAC-AACTCAAT  1091

seq1  ACCGTCTTTGTACCCACAGATAGAGACCATTATAAAATATCTGTCTTAAA  1150
      | ||||||||||||  | || ||| | |||  ||||| ||||||||||||
seq2  A-CGTCTTTGTACC--CCGAAAGA-AACAT--TAAAAAATCTGTCTTAAA  1135

seq1  AAAAATAATTTATCCTTTATCGTCAATGAACCCTCTTCATAG  1192
      ||||   |||||||  |||||||| ||| |||||| ||||||
seq2  AAAA--TATTTATC--TTATCGTC-ATGGACCCTC-TCATAG  1171