BAC Information

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BAC

Clone NameB6Ng01-099M04
Chromosome4 (Build37)
Map Location 146,766,066 - 146,766,912
singlet/doubletsinglet
Overlap genenone
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Downstream geneLOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099M04.bB6Ng01-099M04.g
ACCDH909466DH909467
length1,2421,127
definitionDH909466|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M04, 5' end.DH909467|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccatgcagagggaagattataaattggaatggatatttgccagg
cagcggtgacacatgtctttgatctcagcacttgggagacaaaggcaggc
agacttctgagttcgaggccagcctaatctacatagtgagttccaggaca
gccagcactatacagagaaacaggctcaaaaacaaacaaacaaatatatg
aatataataaaagaatggattttttagcacataaacacagtaagaaaaac
ctacatggagaaggtctctgaattgatattaaaaggaaaaagtgagacat
tgacaagtagttggaatggatccacctaaaatagtggtaccttctactaa
tgcagagattgccttcttaggggcacaacgtgagtgaatcttggtaaaga
acatgcagtaactttttggagagattaataacagataccatgaaaacaaa
tgatttcatttcataaaaagaactatgtggattttccctcataaaataaa
ggaaattccattatctggagcccctacatgttatgctgaggctaataaat
caggaaaggcaggatataaatcagaagatgtaggtcgctgaatgtcccta
taaatcagttcaaagatctgaattatgtacaatactcacagtgttgtcag
attctcaagagtctcttaatatagtaactgactctcaatatgcagaaagg
gttgtttttccaatacagactgttgatcttattcaggatgaatctgaatt
gacttcactatttcttcagctaaaacaaaagataagaaccaggagtgatc
cactatatataacacacataagatcccatacaggtttgccaggccctctg
gcacaaggtgataatgaaattgaccagctattgatagaaacagtaaaaga
ggctttagaattccataaaaaatcatgttaacagcaaagatttaaagaaa
gagccaaggaaaatgtgagcaatgttctacttgctcatatacaatcaaat
tccatatctcaggaactaagcgtaaggtactaaagaaatgtcattggcaa
tgatgtattcaatttacaagtttgtagctgaatgtgtgtggcatactata
gaaacgtataggattcatggaaactgcctcagcatagaaagctgatctgt
acctacaattggtagttaggccatctgaaatcctacattcgaaagacaaa
tggtctctacacgcagaccagaatgtgtctctcgtaggatga
gaattcatcagagaattcatacaggagagaaaccttacaaatgtagtgaa
tgtgacaaatgctttactaaaaaatccagtttgaggattcatcagagatt
tcatacaggagagaaaccttacaaatgtagtgaatgtggcaaatgtttta
ttaaaaaatgcagtctgataattcatcagagaattcatacaggagagaaa
ccttacaaatgtagtgaatgtgacaaagctttactgagaaagtcagatgg
catcagagaactcatacaggggagaattcttacaaatgtattgaatgtga
caaatgttttgcccagaaatcctatcttgtttttaatcacagaaatcata
cattaaagaagccttacaaatgcagtcaatgtgacaaatgattttcccac
aaacttagtctgagaatgcatcagagaattcatacagtagagaaaattta
caaaaatgcagtgaatgtgataaatgctttactaataaaggcagactgag
aatcagataatttatacatttaaagaaaaaccttacaagtattttgtatg
tgataaatgcagtacccacaacatcagtctgacaaatcaacaaatatttc
aaacagtagagcaacattataaatgaaatgaatgagataatcctttaaca
agaaatatcatcttaaaattcactggagaattcttccaaaagggaaactt
ttcaaatacattgatggtttgaatcctttattttggcctatctcttagaa
tgtaacagataatttatacaggcaagaatcttaacaaatataatatatgc
tgaaatatctttgacttcatttcagtgcagaaaaaatatgtaaaatattt
tttttatgggaaaaatagttctcctggggaaatgtggcatatgttttaca
cgggtattattcttttcaacagttagtgctctaactagagaattatgaat
ctgaaaactttgaaaccttcatgcatgtcaatcttagatatgtcaactat
tatgctgcagtactctgatatatgatatgagaaacattttcattaaactt
ttacttgtcaccctcaattttatatgatgagtcaggtgtgaagcagaaga
taatgaggttgtgcacatcatggagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146766066_146766912
seq2: B6Ng01-099M04.g_371_1194

seq1  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50

seq1  TAAAGAAGCCTTACAAATGTAGTCAATGTGACAAATGATTTTCCCACAAA  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAAAGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAA  100

seq1  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAATTTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAATTTACAA  150

seq1  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAG---  197

seq1  TAATCAGATAATTTATACATTTAAAAAAAAACCTTACAAGTATTTTGTAT  250
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  -AATCAGATAATTTATACATTTAAAGAAAAACCTTACAAGTATTTTGTAT  246

seq1  GTGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAAATATTT  296

seq1  CAAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAATCCTTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAATCCTTTAAC  346

seq1  AAGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACT  396

seq1  TTTCAAATACATTGATGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATACATTGATGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGA  446

seq1  ATGTAACAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATG  496

seq1  CTGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAATA-T  549
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAATATT  546

seq1  TTTTTTATGGGAAAAAAAGTTCTCCTGGGGAAATGTGGCATATGTTTTAC  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTAC  596

seq1  ACGGGTAATATTCTTTTCAACAGTTAGTGCTCTAAACTAGAGAATTATGA  649
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  ACGGGTATTATTCTTTTCAACAGTTAGTGCTCT-AACTAGAGAATTATGA  645

seq1  ATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGATAATG  699
      |||||||||||||   |||||||||||| ||||   |||||||||| |||
seq2  ATCTGAAAACTTT--GAAACCTTCATGC-ATGT--CAATCTTAGAT-ATG  689

seq1  TCAACTATTATGCTGGCAGTAACTCTGAATATATGATAATGAAGAAACAT  749
      |||||||||||||| ||||| |||||| ||||||||| ||| ||||||||
seq2  TCAACTATTATGCT-GCAGT-ACTCTG-ATATATGAT-ATG-AGAAACAT  734

seq1  TTTCATTAAACTTTTACTTGTTCACCCTCAAATATTATATGATGAAGTCA  799
      |||||||||||||||||||| |||||||| ||| |||||||||| |||||
seq2  TTTCATTAAACTTTTACTTG-TCACCCTC-AATTTTATATGATG-AGTCA  781

seq1  GGTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATGGAGAT  847
      ||||||||   |||||||  |||| ||||||| |||  ||||||||||
seq2  GGTGTGAA--GCAGAAGATAATGAGGTTGTGC-ACA--TCATGGAGAT  824