BAC Information

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BAC

Clone NameB6Ng01-099O19
Chromosome4 (Build37)
Map Location 87,422,692 - 87,532,075
singlet/doubletdoublet
Overlap geneMllt3
Upstream geneDennd4c, Rps6, Asah3l, Slc24a2
Downstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099O19.bB6Ng01-099O19.g
ACCDH909580DH909581
length1,147785
definitionDH909580|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O19, 5' end.DH909581|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,422,692 - 87,423,828)(87,531,291 - 87,532,075)
sequence
gaattctttcgtaagtaagttatctttttccttacattatatagaaaaaa
aattaatccagttgaaacttgtagactttggtataggaagttgggtattg
tggtatacactcttcattctaactcataagagactgaggcagagagattg
cagggtgacatggcaagattctgtataatagtaataataatgatagtaat
aataataatcagacaagaacaggacaaatagattcctctgagccactgta
gttagaaatttatacaatgaaggcaattggcaacagcaaacggacagcag
ataaaggacagatgatcacaaggagagcctgaatctggcttctggaaatc
tgactgctcactacatgtacactctaggtacatcaccgcgtctcatctgg
aagatggggcttaggaacacagttgccaggctgtcagaggatcatggaag
atgcaactaccacttgctacagggatcaaggctgtatggctacaattacc
atattaacagaaatgtgccctcagttgcctatagggggaagtacctagca
caggactctcagacttggtgcatcttacttctagcttccatgactgccag
ccatctcattccaccaaaacaaattaaacaataaaaatgcagggaagaca
accaagaaaggcctacatgaatttgttttttaataattaaaattttcaga
cagaaagaagaaggtgggagaacagatgaagccaagttgtcaaagtgact
aaaactgcaatggagagatcccagcagctgattttatttgtgttattgtt
ctgaatgacagggacctcacccttttcaagagaacagttttcgatatata
atatataaaatatattatatataatatatagggagtatattatatataat
atataaactatataaaatacagtttaacttatattttctctatatagtta
cctacatgctactttagtaataaattgaaaaggaagatgataaagagctt
ttttgtagaagaaggtcacttaattttatatcaaacgaaagcttctggct
gctaggaaacccactgcagtatagtaagggtttcagtattcacaaggcta
tcatacatttctgctggacccaggttctcaccctgctataaggcgcg
gaattcaacctgcttcctaaatgagggactatctctgggacagggattaa
tggtagcagttacaccgcgatgcactaattttgtacaataagaagcatag
gagaatctagaaaaggaaagctgccatttagtttcaaagtattagtagaa
ggctctttggaggaagcggtgtttgagttgggtcttgtggctctgaagga
aggagacttgtggtccagaactaccccagtcagtgaactgtgtttagttg
ctgtttctaaagctttatgaaaaatgtgcttgtgttcacatagttatttg
ttacatttggcaaagatagtattttaggactgcatttgaacttttaaatg
aacaaggtggaaaactccaccacacagttaataatttgcccaatgttatt
ctctaaccttttttctttgttatttagaaacagtcgaagcagtaatgaat
atgtctgtctgtctgcctctctctctctctctctctctctctgtatgtgg
cacacaagtgcactcatgagtatgtgtccatgtgtgcctataaaaacaaa
aacaaagcccaactgttgatttttgttctttttagactgtcatagtgtcc
aggcgtagaccatgtttatagacagtgtggtgagctattccctgatgctc
agactattagaccctggctctagactttcagacggtggtaggagactatt
gggacaatgagatcggttgtacaggaccctgtattcttcatttctggggg
ctctgatgtggtgggattgaaatggggtgggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87422692_87423828
seq2: B6Ng01-099O19.b_49_1195

seq1  GAATTCTTTCGTAAGTAAGTTATCTTTTTCCTTACATTATATAGAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCGTAAGTAAGTTATCTTTTTCCTTACATTATATAGAAAAAA  50

seq1  AATTAATCCAGTTGAAACTTGTAGACTTTGGTATAGGAAGTTGGGTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCCAGTTGAAACTTGTAGACTTTGGTATAGGAAGTTGGGTATTG  100

seq1  TGGTATACACTCTTCATTCTAACTCATAAGAGACTGAGGCAGAGAGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATACACTCTTCATTCTAACTCATAAGAGACTGAGGCAGAGAGATTG  150

seq1  CAGGGTGACATGGCAAGATTCTGTATAATAGTAATAATAATGATAGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGACATGGCAAGATTCTGTATAATAGTAATAATAATGATAGTAAT  200

seq1  AATAATAATCAGACAAGAACAGGACAAATAGATTCCTCTGAGCCACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATCAGACAAGAACAGGACAAATAGATTCCTCTGAGCCACTGTA  250

seq1  GTTAGAAATTTATACAATGAAGGCAATTGGCAACAGCAAACGGACAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAATTTATACAATGAAGGCAATTGGCAACAGCAAACGGACAGCAG  300

seq1  ATAAAGGACAGATGATCACAAGGAGAGCCTGAATCTGGCTTCTGGAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGACAGATGATCACAAGGAGAGCCTGAATCTGGCTTCTGGAAATC  350

seq1  TGACTGCTCACTACATGTACACTCTAGGTACATCACCGCGTCTCATCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTCACTACATGTACACTCTAGGTACATCACCGCGTCTCATCTGG  400

seq1  AAGATGGGGCTTAGGAACACAGTTGCCAGGCTGTCAGAGGATCATGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGGCTTAGGAACACAGTTGCCAGGCTGTCAGAGGATCATGGAAG  450

seq1  ATGCAACTACCACTTGCTACAGGGATCAAGGCTGTATGGCTACAATTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACTACCACTTGCTACAGGGATCAAGGCTGTATGGCTACAATTACC  500

seq1  ATATTAACAGAAATGTGCCCTCAGTTGCCTATAGGGGGAAGTACCTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACAGAAATGTGCCCTCAGTTGCCTATAGGGGGAAGTACCTAGCA  550

seq1  CAGGACTCTCAGACTTGGTGCATCTTACTTCTAGCTTCCATGACTGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCTCAGACTTGGTGCATCTTACTTCTAGCTTCCATGACTGCCAG  600

seq1  CCATCTCATTCCACCAAAACAAATTAAACAATAAAAATGCAGGGAAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCATTCCACCAAAACAAATTAAACAATAAAAATGCAGGGAAGACA  650

seq1  ACCAAGAAAGGCCTACATGAATTTGTTTTTTAATAATTAAAATTTTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAAAGGCCTACATGAATTTGTTTTTTAATAATTAAAATTTTCAGA  700

seq1  CAGAAAGAAGAAGGTGGGAGAACAGATGAAGCCAAGTTGTCAAAGTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAGAAGGTGGGAGAACAGATGAAGCCAAGTTGTCAAAGTGACT  750

seq1  AAAACTGCAATGGAGAGATCCCAGCAGCTGATTTTATTTGTGTTATTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCAATGGAGAGATCCCAGCAGCTGATTTTATTTGTGTTATTGTT  800

seq1  CTGAATGACAGGGACCTCACCC-TTTCAAGAGAACAGTTTTCGATATATA  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGAATGACAGGGACCTCACCCTTTTCAAGAGAACAGTTTTCGATATATA  850

seq1  ATATATAAAATATATTATATATAATATATA-GGAGTATATTATATATAAT  898
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATATATAAAATATATTATATATAATATATAGGGAGTATATTATATATAAT  900

seq1  ATATAAACTATATAAAATACAGTTTAAC-TATA-TTTCTCTATATAGTTA  946
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  ATATAAACTATATAAAATACAGTTTAACTTATATTTTCTCTATATAGTTA  950

seq1  CCTACATGCTAC-TTAGTAATAAATTGAAAAGG-AGATGAT-AAGAGC-T  992
      |||||||||||| |||||||||||||||||||| ||||||| |||||| |
seq2  CCTACATGCTACTTTAGTAATAAATTGAAAAGGAAGATGATAAAGAGCTT  1000

seq1  GTTTGTAGAAGAAGGTCACTTAATTTTATATCAAACCAAAGCTTCTGGCT  1042
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTGTAGAAGAAGGTCACTTAATTTTATATCAAACGAAAGCTTCTGGCT  1050

seq1  GCTAGGGAACCCACTGCAGTATAGTAAAGGTTTCCAGTATTCACAA-GCT  1091
      |||||| |||||||||||||||||||| ||||| |||||||||||| |||
seq2  GCTAGGAAACCCACTGCAGTATAGTAAGGGTTT-CAGTATTCACAAGGCT  1099

seq1  ATCATACATTTCTGCTGACCCCAGG-TCTCACCCTGCCTATA--GCGCG  1137
      |||||||||||||||||  |||||| |||||||||| |||||  |||||
seq2  ATCATACATTTCTGCTGGACCCAGGTTCTCACCCTG-CTATAAGGCGCG  1147

seq1: chr4_87531291_87532075
seq2: B6Ng01-099O19.g_67_851 (reverse)

seq1  CCTTCCCACCCCATTTCAATCCCACCACATCAGAGCCCCCAGAAATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCACCCCATTTCAATCCCACCACATCAGAGCCCCCAGAAATGAAG  50

seq1  AATACAGGGTCCTGTACAACCGATCTCATTGTCCCAATAGTCTCCTACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGGGTCCTGTACAACCGATCTCATTGTCCCAATAGTCTCCTACCA  100

seq1  CCGTCTGAAAGTCTAGAGCCAGGGTCTAATAGTCTGAGCATCAGGGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTGAAAGTCTAGAGCCAGGGTCTAATAGTCTGAGCATCAGGGAATA  150

seq1  GCTCACCACACTGTCTATAAACATGGTCTACGCCTGGACACTATGACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCACACTGTCTATAAACATGGTCTACGCCTGGACACTATGACAGT  200

seq1  CTAAAAAGAACAAAAATCAACAGTTGGGCTTTGTTTTTGTTTTTATAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGAACAAAAATCAACAGTTGGGCTTTGTTTTTGTTTTTATAGGC  250

seq1  ACACATGGACACATACTCATGAGTGCACTTGTGTGCCACATACAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGACACATACTCATGAGTGCACTTGTGTGCCACATACAGAGAGA  300

seq1  GAGAGAGAGAGAGAGAGAGGCAGACAGACAGACATATTCATTACTGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGGCAGACAGACAGACATATTCATTACTGCTTC  350

seq1  GACTGTTTCTAAATAACAAAGAAAAAAGGTTAGAGAATAACATTGGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTCTAAATAACAAAGAAAAAAGGTTAGAGAATAACATTGGGCAA  400

seq1  ATTATTAACTGTGTGGTGGAGTTTTCCACCTTGTTCATTTAAAAGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAACTGTGTGGTGGAGTTTTCCACCTTGTTCATTTAAAAGTTCAA  450

seq1  ATGCAGTCCTAAAATACTATCTTTGCCAAATGTAACAAATAACTATGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCCTAAAATACTATCTTTGCCAAATGTAACAAATAACTATGTGA  500

seq1  ACACAAGCACATTTTTCATAAAGCTTTAGAAACAGCAACTAAACACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCACATTTTTCATAAAGCTTTAGAAACAGCAACTAAACACAGTT  550

seq1  CACTGACTGGGGTAGTTCTGGACCACAAGTCTCCTTCCTTCAGAGCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTGGGGTAGTTCTGGACCACAAGTCTCCTTCCTTCAGAGCCACA  600

seq1  AGACCCAACTCAAACACCGCTTCCTCCAAAGAGCCTTCTACTAATACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAACTCAAACACCGCTTCCTCCAAAGAGCCTTCTACTAATACTTT  650

seq1  GAAACTAAATGGCAGCTTTCCTTTTCTAGATTCTCCTATGCTTCTTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAATGGCAGCTTTCCTTTTCTAGATTCTCCTATGCTTCTTATTG  700

seq1  TACAAAATTAGTGCATCGCGGTGTAACTGCTACCATTAATCCCTGTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATTAGTGCATCGCGGTGTAACTGCTACCATTAATCCCTGTCCCA  750

seq1  GAGATAGTCCCTCATTTAGGAAGCAGGTTGAATTC  785
      |||||||||||||||||||||||||||||||||||
seq2  GAGATAGTCCCTCATTTAGGAAGCAGGTTGAATTC  785