BAC Information

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BAC

Clone NameB6Ng01-100A06
Chromosome4 (Build37)
Map Location 104,178,886 - 104,346,480
singlet/doubletdoublet
Overlap geneDab1
Upstream geneLOC665451, LOC100039940, EG665460, LOC622315
Downstream geneC8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100A06.bB6Ng01-100A06.g
ACCDH909641DH909642
length9661,154
definitionDH909641|Mus musculus domesticus DNA, BAC clone: B6Ng01-100A06, 5' end.DH909642|Mus musculus domesticus DNA, BAC clone: B6Ng01-100A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,345,515 - 104,346,480)(104,178,886 - 104,180,031)
sequence
gaattctaccgtgtttagctttcatataaccattgtgtatatgcccaccc
ctttcctgacgcaatagtgttcatgaaaaaatatccatcacaattcaagt
atgctaacaacaacaacaacaagaacaacaaagaaaaccaaaattcaaca
aaacaaaaattacaaaatacagagaagtagaaagacacagaataaaaata
gaaccatgaaaaacactacttcacatgataagcaattacagtagttaaaa
cctcacaagacaaagggaggcctgggctcattataaaagcctttctcttt
tgtaacatatttttggatgcattcactgtgatgcggtgccaacaaaactg
ggaggcaacctctgttccagccccctgggcaccccaccatcaagtgcttc
acagagcaggtcagagggagctcttccctgggtggcatcctgaaatcttc
tttcaggtttttctcagatcacatggtctccagctgtcgaggcctcttga
tcagtaccttgatcggctgcctaccttgagcaataccttgctaatgggga
gaagggagatgctctcaagccagggaaaacacaatttgaaacacagctct
cccatctgcctgtgtgacccttagaagcgctctctctctctctctctctc
tctctctctctctctctctcacatgtccctctctgatttttgtagactat
gagaaaatgacacagaaccccaaaatgttgccagataaaacttccatgta
tctccccttcagaatgaagcgaatactatgcagatttgagaagctgtgga
gaaatacagaccacacatgtgtgtaggtgtaatataagggaaaatggcag
gatctctctgggtgctttgaggagattaaaaagttagggtatggattgct
tactgtattccgggcacctggggagaagggtgctttcttgttatctgtgg
aaatgcacttccctgg
gaattcatccttcacaccagagcagaagaagacacggcttcgcttagtat
aacgggaaggccacaatgtcacggcatctcatatgactctgaaccagcag
cgcatgttgttgccactatagagtagtcctcacgtgggcagtgtgtacct
atatgtacacaagttgacgccttctaatctgaacaagcaaatgaaggcat
tcgtgattggaggatttcagttgtaggcaaggtgacacagggcagtgaca
ttagggtacagactggactgtcatcagttctgaggccagagacgagtcct
ggtctccagtggtctgaatgagccagggccctgttctctctctttctgat
ctcttcatcatggtggcttttcctctacagagagagagagagagagagag
agagagagagagagagagagagagagagacagacaaacagagagagagac
aaagagagagagagagagacagacagagacagacagacagacagagagac
agagacactgattgattttgagagtactgaggtaagcacttctcttgtta
ctttcataaactattgtgctgttggaaagtcaatccctgctgtgcaggtg
gggttagagagtaaagagagaaagaactctgtagctaccaccatcattgt
aggaaacaaatgctatttagtcattgggtagataaggggactttataggt
atagcagaaaaaaaaatatgtcagactccaaagaagttcattttcaagta
tgaaaacttaactgcagtctgacttgtttcttacaaagcctgaagtagaa
gacaggggctgctcccaaagcctggtggttggttttatatgcatgaactg
agagggttagagtctgtagtcataaatgttatggttattgagtgcttagt
ttggactagccactggtacatgtcttttcagtaatttattggctcaaaat
gcagtgtgaataaggcctggaaaagatggctctgttgctaagtgcttgcc
gtgcaggtaagagggcacgaactcaaatcttagtacctttcatccaacaa
caaaaacaaagcaaaacaacaacaacaactaaaaaaaaaaacggccggtg
cttataatatcagggctagtgacgtgggagaccgagcaaagtgtttgggc
ttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_104345515_104346480
seq2: B6Ng01-100A06.b_46_1011 (reverse)

seq1  CCAGAGAAGTTGCATTTCCACAGATAACAAGAAAGCAACCCTTCTCCCCA  50
      |||| |||| |||||||||||||||||||||||||| |||||||||||||
seq2  CCAGGGAAG-TGCATTTCCACAGATAACAAGAAAGC-ACCCTTCTCCCCA  48

seq1  GGTGCCCTGTACTACAGTAAGCAATCCATACCCTAACTTATTAATCTCCT  100
      ||||||| | | ||||||||||||||||||||||||||| ||||||||||
seq2  GGTGCCC-GGAATACAGTAAGCAATCCATACCCTAACTTTTTAATCTCCT  97

seq1  CAAAGCA-CCAGAGAGATCCTGCCATTTTCCC-TATATTACACCTACACA  148
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  CAAAGCACCCAGAGAGATCCTGCCATTTTCCCTTATATTACACCTACACA  147

seq1  CATTGTGTGGTCTGTATTTCTCCACAGCTTCTCAACTCTGCATAGTATTC  198
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CA-TGTGTGGTCTGTATTTCTCCACAGCTTCTCAAATCTGCATAGTATTC  196

seq1  GCTTCATTCTGAAGGGGAGATACATGGAAGTTTTATCTGGCAACA-TTTG  247
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTTCATTCTGAAGGGGAGATACATGGAAGTTTTATCTGGCAACATTTTG  246

seq1  GGGTTCTGTGTCA-TTTCTCATAGTCTACAAAAATCAGAGAGGGACATGT  296
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGTGTCATTTTCTCATAGTCTACAAAAATCAGAGAGGGACATGT  296

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCTTCTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCTTCTAA  346

seq1  GGGTCACACAGGCAGATGGGAGAGCTGTGTTTCAAATTGTGTTTTCCCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACACAGGCAGATGGGAGAGCTGTGTTTCAAATTGTGTTTTCCCTG  396

seq1  GCTTGAGAGCATCTCCCTTCTCCCCATTAGCAAGGTATTGCTCAAGGTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGAGCATCTCCCTTCTCCCCATTAGCAAGGTATTGCTCAAGGTAG  446

seq1  GCAGCCGATCAAGGTACTGATCAAGAGGCCTCGACAGCTGGAGACCATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCGATCAAGGTACTGATCAAGAGGCCTCGACAGCTGGAGACCATGT  496

seq1  GATCTGAGAAAAACCTGAAAGAAGATTTCAGGATGCCACCCAGGGAAGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGAAAAACCTGAAAGAAGATTTCAGGATGCCACCCAGGGAAGAG  546

seq1  CTCCCTCTGACCTGCTCTGTGAAGCACTTGATGGTGGGGTGCCCAGGGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTGACCTGCTCTGTGAAGCACTTGATGGTGGGGTGCCCAGGGGG  596

seq1  CTGGAACAGAGGTTGCCTCCCAGTTTTGTTGGCACCGCATCACAGTGAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAGAGGTTGCCTCCCAGTTTTGTTGGCACCGCATCACAGTGAAT  646

seq1  GCATCCAAAAATATGTTACAAAAGAGAAAGGCTTTTATAATGAGCCCAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAAAAATATGTTACAAAAGAGAAAGGCTTTTATAATGAGCCCAGG  696

seq1  CCTCCCTTTGTCTTGTGAGGTTTTAACTACTGTAATTGCTTATCATGTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTTGTCTTGTGAGGTTTTAACTACTGTAATTGCTTATCATGTGA  746

seq1  AGTAGTGTTTTTCATGGTTCTATTTTTATTCTGTGTCTTTCTACTTCTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGTTTTTCATGGTTCTATTTTTATTCTGTGTCTTTCTACTTCTCT  796

seq1  GTATTTTGTAATTTTTGTTTTGTTGAATTTTGGTTTTCTTTGTTGTTCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGTAATTTTTGTTTTGTTGAATTTTGGTTTTCTTTGTTGTTCTT  846

seq1  GTTGTTGTTGTTGTTAGCATACTTGAATTGTGATGGATATTTTTTCATGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTGTTAGCATACTTGAATTGTGATGGATATTTTTTCATGA  896

seq1  ACACTATTGCGTCAGGAAAGGGGTGGGCATATACACAATGGTTATATGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATTGCGTCAGGAAAGGGGTGGGCATATACACAATGGTTATATGAA  946

seq1  AGCTAAACACGGTAGAATTC  966
      ||||||||||||||||||||
seq2  AGCTAAACACGGTAGAATTC  966

seq1: chr4_104178886_104180031
seq2: B6Ng01-100A06.g_68_1221

seq1  GAATTCATCCTTCACACCAGAGCAGAAGAAGACACGGCTTCGCTTAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTTCACACCAGAGCAGAAGAAGACACGGCTTCGCTTAGTAT  50

seq1  AACGGGAAGGCCACAATGTCACGGCATCTCATATGACTCTGAACCAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGAAGGCCACAATGTCACGGCATCTCATATGACTCTGAACCAGCAG  100

seq1  CGCATGTTGTTGCCACTATAGAGTAGTCCTCACGTGGGCAGTGTGTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGTTGTTGCCACTATAGAGTAGTCCTCACGTGGGCAGTGTGTACCT  150

seq1  ATATGTACACAAGTTGACGCCTTCTAATCTGAACAAGCAAATGAAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACACAAGTTGACGCCTTCTAATCTGAACAAGCAAATGAAGGCAT  200

seq1  TCGTGATTGGAGGATTTCAGTTGTAGGCAAGGTGACACAGGGCAGTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATTGGAGGATTTCAGTTGTAGGCAAGGTGACACAGGGCAGTGACA  250

seq1  TTAGGGTACAGACTGGACTGTCATCAGTTCTGAGGCCAGAGACGAGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTACAGACTGGACTGTCATCAGTTCTGAGGCCAGAGACGAGTCCT  300

seq1  GGTCTCCAGTGGTCTGAATGAGCCAGGGCCCTGTTCTCTCTCTTTCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCAGTGGTCTGAATGAGCCAGGGCCCTGTTCTCTCTCTTTCTGAT  350

seq1  CTCTTCATCATGGTGGCTTTTCCTCTACAGAGAGAGAGAGAGAGAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATCATGGTGGCTTTTCCTCTACAGAGAGAGAGAGAGAGAGAGAG  400

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGACAAACAGAGAGAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGACAAACAGAGAGAGAGAC  450

seq1  AAAGAGAGAGAGAGAGAGACAGACAGAGACAGACAGACAGACAGAGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGAGAGAGAGACAGACAGAGACAGACAGACAGACAGAGAGAC  500

seq1  AGAGACACTGATTGATTTTGAGAGTACTGAGGTAAGCACTTCTCTTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGATTGATTTTGAGAGTACTGAGGTAAGCACTTCTCTTGTTA  550

seq1  CTTTCATAAACTATTGTGCTGTTGGAAAGTCAATCCCTGCTGTGCAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAAACTATTGTGCTGTTGGAAAGTCAATCCCTGCTGTGCAGGTG  600

seq1  GGGTTAGAGAGTAAAGAGAGAAAGAACTCTGTAGCTACCACCATCATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGAGAGTAAAGAGAGAAAGAACTCTGTAGCTACCACCATCATTGT  650

seq1  AGGAAACAAATGCTATTTAGTCATTGGGTAGATAAGGGGACTTTATAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAAATGCTATTTAGTCATTGGGTAGATAAGGGGACTTTATAGGT  700

seq1  ATAGCAGAAAAAAAAATATGTCAGACTCCAAAGAAGTTCATTTTCAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGAAAAAAAAATATGTCAGACTCCAAAGAAGTTCATTTTCAAGTA  750

seq1  TGAAAACTTAACTGCAGTCTGACTTGTTTCTTACAAAGCCTGAAGTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTTAACTGCAGTCTGACTTGTTTCTTACAAAGCCTGAAGTAGAA  800

seq1  GACA-GGGCTGCTCCCAAAGCCTGGTGGCTGG-TTTATATGCATGAACTG  848
      |||| ||||||||||||||||||||||| ||| |||||||||||||||||
seq2  GACAGGGGCTGCTCCCAAAGCCTGGTGGTTGGTTTTATATGCATGAACTG  850

seq1  AGAGGGTTAGAGTCTGTAGTCATAAATGTTATGGTTATTGAGTGCTTAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTAGAGTCTGTAGTCATAAATGTTATGGTTATTGAGTGCTTAGT  900

seq1  TTGGACTAGCCACTGGTACATGTCTTTTCAGTAATTTAATTGGCTCAAAA  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGGACTAGCCACTGGTACATGTCTTTTCAGTAATTT-ATTGGCTCAAAA  949

seq1  TGCAGTGTG-ATAAGGCCTGG-AGAGATGGCTCTGTTGGCTAAGTGCTTG  996
      ||||||||| ||||||||||| | ||||||||||||| ||||||||||||
seq2  TGCAGTGTGAATAAGGCCTGGAAAAGATGGCTCTGTT-GCTAAGTGCTTG  998

seq1  CCGTGCAGGTAGAAGGGCACGAACTCAATCCTTAGTACC-TTCATCCAAC  1045
      |||||||||||  |||||||||||||||  ||||||||| ||||||||||
seq2  CCGTGCAGGTAAGAGGGCACGAACTCAAATCTTAGTACCTTTCATCCAAC  1048

seq1  AAC-AAAACAAAGCAAAACAACAACAACAAC-AAAAAAAAAAACAG-CGG  1092
      ||| ||||||||||||||||||||||||||| |||||||||||| | |||
seq2  AACAAAAACAAAGCAAAACAACAACAACAACTAAAAAAAAAAACGGCCGG  1098

seq1  TGCTTATAATATCAGGGCTAGTGACGTG---GAGCCAGGCAAGTGTTTGG  1139
      ||||||||||||||||||||||||||||   || | ||  |||||||| |
seq2  TGCTTATAATATCAGGGCTAGTGACGTGGGAGACCGAGCAAAGTGTTT-G  1147

seq1  GGCTTGC  1146
      |||||||
seq2  GGCTTGC  1154