BAC Information

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BAC

Clone NameB6Ng01-100B16
Chromosome4 (Build37)
Map Location 146,520,131 - 146,521,124
singlet/doubletsinglet
Overlap geneOTTMUSG00000010657
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneLOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100B16.bB6Ng01-100B16.g
ACCDH909702DH909703
length9981,058
definitionDH909702|Mus musculus domesticus DNA, BAC clone: B6Ng01-100B16, 5' end.DH909703|Mus musculus domesticus DNA, BAC clone: B6Ng01-100B16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctacttcatgttccctgtgccttccatcctctgtgtgtctgtt
cagttagtttaaatctgtaacttcctgaaggctaccttgtgtatatctcc
ctttctgtctgccttttgtctccatgtttgtgtctatctgagtaatctgt
tgtttgtttgtatctgtctggctgggcataagagagagctttggagtgtt
tctagaacattaagggaaccatcacgtggggaaagaatgggacagtgaac
agtaatctttaacagagttttataaaggattaggtaactggctgtgaggt
ccaggaaaattctccatctattagaaggtaagatcttttatataatatat
tgtcacactcatggttctgccaatgcataggaaaggaccacggagcaaga
ctccatggagttctgttggatacattcttagtaagatatctgcaaaaaaa
aattttttttgaaaagtaccactttataagtgtatgaagatggtttaaat
gaagtctttgaatactgaaagagatggagttccagttgatcttgtctttt
caactgtgttacatcaagaaagttgctagccaaagtgatctcataaaaat
acccagagaatgcaggccactgacaacaaaaggggttgcttttcacaaac
tgacaataagtcttcattgctaaagacagggctgacacaaaacactgtat
atgaaaagggcaaactggtgccagtaagaacattgactcttatattccag
tgtcctcattagggaagatgctttgaaaggtacacaaagtaaaatatata
cacagaaccaaccaaaaagacgtttgatctataatttttccttttcagaa
aatatgcttagggcaatgatgtcatgaattttactgggaataaccaatca
atgtctaatttgacttgaataccaaaagcactttgggttaaatgttatat
atctatatacacaagtgtgtgtggacatgagttagggttacacctgca
gaattctctgtttaggtattgtactggctagttttgtgtcaacttgacac
agctggagttatcacagagaaaggagcttcagttgaggaaatgcctccat
gagatccaactgtaaggcattttctcaattagtgatcaagggggaaaggc
ccttgtgggtgggaccatctcagggctggtagtcttggttctataagaaa
gcgggctgagcaagccaggggaggcaagccagtacagaacatccctccat
ggcctctgcatcagctcctgctccctgacctgcttgagttccagtcctga
cttcctttggtgatgaacagcagtatggaagtgtaagccaaataaaccct
ttcctccccaacttgcttcttggtcatgatgtttgtgcaggaatagaaac
cctgactaagacaaattggtaccagcagagtggggtattcctgtgacaac
ctgaccatgttttggggaggactgtggaaggactttggaactttgggctt
gaagatccatccgttgttaagagctctgtcggatgttgtgtaggagcttg
gaagataatgttgagaacactgcagaagatggaggtctggtttgtgaaat
ttcagagggaaaattaaagactcttttcagggccattgctgttttgaatg
tgaagattctgtagttctggttagctggggctgaagaatcagttgtgatt
aacaagataccagaactactaaagcaaaaactttgcatactgggactatt
gatgctggttagctggagctaagaaattagtggtgattaagaagagacca
gcatcattgaggtgacatcttctgggaagtgttttctgaaagcacaaaga
ggctgttttccagagatggccaaggttgtactcctgctgcagcaggactt
ggtaatatgtaggggtcacccaggtggtactgggtttggaggctgagggt
cacgcaaagcagcttgagctccggcactgtgagaggccatggaaggtcat
tggtgaaggtgcagcctcagttgcattgaggcccaggattgaaggggtca
tgccgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146520131_146521124
seq2: B6Ng01-100B16.b_47_1043 (reverse)

seq1  GCAGGTGTAACCCTAACTCATGTCCACACACACTTGTGTATATAGATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTAACCCTAACTCATGTCCACACACACTTGTGTATATAGATATA  50

seq1  TAACATTTAA-CCAAAGTGCTTTTGGTATTCAAGTCAAATTAGACATTGA  99
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTAACCCAAAGTGCTTTTGGTATTCAAGTCAAATTAGACATTGA  100

seq1  TTGGTTATTCCCAGT-AAATTCATGACATCATTGCCCTAAGCATATTTTC  148
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGGTTATTCCCAGTAAAATTCATGACATCATTGCCCTAAGCATATTTTC  150

seq1  TGAAAAGGAAAAATTATAGATC-AACGTCTTTTTGGTTGGTTCTGTGTAT  197
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGAAAAGGAAAAATTATAGATCAAACGTCTTTTTGGTTGGTTCTGTGTAT  200

seq1  ATATTTTACTTTGTGTACCTTTCAAAGCATCTTCCCTAATGAGGACACTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTACTTTGTGTACCTTTCAAAGCATCTTCCCTAATGAGGACACTG  250

seq1  GAATATAAGAGTCAATGTTCTTACTGGCACCAGTTTGCCCTTTTCATATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAGAGTCAATGTTCTTACTGGCACCAGTTTGCCCTTTTCATATA  300

seq1  CAGTGTTTTGTGTCAGCCCTGTCTTTAGCAATGAAGACTTATTGTCAGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTTGTGTCAGCCCTGTCTTTAGCAATGAAGACTTATTGTCAGTT  350

seq1  TGTGAAAAGCAACCCCTTTTGTTGTCAGTGGCCTGCATTCTCTGGGTATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGCAACCCCTTTTGTTGTCAGTGGCCTGCATTCTCTGGGTATT  400

seq1  TTTATGAGATCACTTTGGCTAGCAACTTTCTTGATGTAACACAGTTGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGATCACTTTGGCTAGCAACTTTCTTGATGTAACACAGTTGAAA  450

seq1  AGACAAGATCAACTGGAACTCCATCTCTTTCAGTATTCAAAGACTTCATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGATCAACTGGAACTCCATCTCTTTCAGTATTCAAAGACTTCATT  500

seq1  TAAACCATCTTCATACACTTATAAAGTGGTACTTTTCAAAAAAAATTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATCTTCATACACTTATAAAGTGGTACTTTTCAAAAAAAATTTTT  550

seq1  TTTTGCAGATATCTTACTAAGAATGTATCCAACAGAACTCCATGGAGTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGATATCTTACTAAGAATGTATCCAACAGAACTCCATGGAGTCT  600

seq1  TGCTCCGTGGTCCTTTCCTATGCATTGGCAGAACCATGAGTGTGACAATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCGTGGTCCTTTCCTATGCATTGGCAGAACCATGAGTGTGACAATA  650

seq1  TATTATATAAAAGATCTTACCTTCTAATAGATGGAGAATTTTCCTGGACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATAAAAGATCTTACCTTCTAATAGATGGAGAATTTTCCTGGACC  700

seq1  TCACAGCCAGTTACCTAATCCTTTATAAAACTCTGTTAAAGATTACTGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCAGTTACCTAATCCTTTATAAAACTCTGTTAAAGATTACTGTT  750

seq1  CACTGTCCCATTCTTTCCCCACGTGATGGTTCCCTTAATGTTCTAGAAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCCATTCTTTCCCCACGTGATGGTTCCCTTAATGTTCTAGAAAC  800

seq1  ACTCCAAAGCTCTCTCTTATGCCCAGCCAGACAGATACAAACAAACAACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAAGCTCTCTCTTATGCCCAGCCAGACAGATACAAACAAACAACA  850

seq1  GATTACTCAGATAGACACAAACATGGAGACAAAAGGCAGACAGAAAGGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTCAGATAGACACAAACATGGAGACAAAAGGCAGACAGAAAGGGA  900

seq1  GATATACACAAGGTAGCCTTCAGGAAGTTACAGATTTAAACTAACTGAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACACAAGGTAGCCTTCAGGAAGTTACAGATTTAAACTAACTGAAC  950

seq1  AGACACACAGAGGATGGAAGGCACAGGGAACATGAAGTAGAGAATTC  994
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACAGAGGATGGAAGGCACAGGGAACATGAAGTAGAGAATTC  997