BAC Information

Click to search

BAC

Clone NameB6Ng01-100C12
Chromosome4 (Build37)
Map Location 145,114,789 - 145,212,759
singlet/doubletdoublet
Overlap geneLOC622846, LOC666314, LOC545701, OTTMUSG00000010965
Upstream gene9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576
Downstream geneLOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100C12.bB6Ng01-100C12.g
ACCDH909736DH909737
length1,0881,154
definitionDH909736|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C12, 5' end.DH909737|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,211,660 - 145,212,759)(145,114,789 - 145,115,939)
sequence
gaattctctgatgcatactaaaactgaatttgtgtttaaaacatttgtca
cattcactgcatttgtaagggttctctcctgtatgaattctctgatgaat
attaagatgggatttgtgggtaaagcatttgtcacattcactacatttgt
aaattttctcttctgcatgaattccctgatggatactaagatggatctga
tgggtaaagcatttgtcacttttactacttttgtaaggtttctttccatg
ataaattctctgctgactttgaagtttttctctctgggtaagatatttgt
caaattcactacatttgtaagggttcactccagtattgtttcgtttcacc
atgactttatgtttagaaacaaaaaccttctcaaattctgcatttcggtt
gtgttttttcttctgcatgtggattccttgattgagactaatggtagaaa
acaaacttacactgtttacagagtcattgtatttgcaaacttctttagtg
ttcctgggcttaagtcttttttggttcgagtattgaagagagctgtgata
agttttgtaaggtgtacattggggggattcaagaatcaccttgctaagct
tgtcccatttagaagacttctcttgaatattcatgtgttcatggacaatg
tactggctgtcttgatccaagaccttcctatactttccacatatgcaatg
attttctgaaaaaaacaaaaacaaaaacaaaatggggcaattagaggtga
catgaattacttatataaggaataagggactcaataaccagtgagcttat
ggattcatactctcaagagaggtttctctctctctctctccttttttttt
tggaattattacatgtatcctcaaagaacctcaaatatgatctatatcaa
gtgattgaaaatgataatagcctgctaaattttatttttcaaattagaca
tcatacccacccagattatattaacccagaattgctctctcttagaaaaa
gagggacaagaatggaaagaggctgaaggagccatcagagactggacaag
agatgcaatacttgctgcaccattggactgagcaaggg
gaattctaagtatgttctatgagttagaaatgcttccagcaattttcaga
caggctttaagcattctgattgctatctctatgttgcatcatgtggttta
tatcattaagaattttctatagatgttgatgagatactgtgctgaagact
cctattcaaaagcattaaggaatatcccatttaatgactttgctctttta
ttttggagttataaggctctcctactccatgtttttccctttcctgtagc
tatggttcatgtaggtcaatattctgaagagcaatcatggtagacagatg
cagagaacttgccttgggtgggaaagagtcctaaggagctaatgggagtg
gtaggagaatgacttgttaatgatggatgcaagctgacagttctgtattc
tgtggagacaagtctctaaatagctctttgcagatgaaacctcctttgca
taagctacttccttaggaaatgcaaatcattacaatcatttactcctggt
tctctcttgattattctgagtcagcattttaaaaccttagaacctttact
cctagaaaaaaacaacaatacaaaaacagaagtacatttgtttttgtttg
tttgctttgttttgttcttaagcatagcagctcctatgtatgttgcttgg
atgcacttcctggatatagagattattttattattattattttctttttt
tcttttctctctctctttttctttctttctttctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttttttcttctttc
tttctttctttctttctttctttctttctttctttctttctttctttctt
tcttctttcttcttctttcttctttctctccctttcttcctttctccttt
cttccttcctccttccttccttccattttcccacactccagatttattgc
cctcccggtccatcctctaactgtccacatcccacacttcctacccatct
ctctgtctccataagatatcccctcccccccccccacctgaccatacctc
taaaggcctggagcctccaatctctctcaagggttggggtgcatggctcc
tgattgacccgacccagcatcttccacctggcatctgtgctgagggccct
ctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145211660_145212759
seq2: B6Ng01-100C12.b_47_1134 (reverse)

seq1  CCCTTGCTCAGTCCAATGGTTGGCAGCAAGTATCTGCATCTCTTTGGTCC  50
      ||||||||||||||||||||  ||||||||||| ||||||||||  ||||
seq2  CCCTTGCTCAGTCCAATGGT--GCAGCAAGTAT-TGCATCTCTT--GTCC  45

seq1  AGTCTCTGGATGGCCTTCCCTTCAGCCTCTTTTCCATTCTTTGTCCCTCT  100
      ||||||| ||||||    ||||||||||| ||||||||| ||||||||||
seq2  AGTCTCT-GATGGC---TCCTTCAGCCTC-TTTCCATTC-TTGTCCCTCT  89

seq1  TTTTCTTAAGAGAGGAGCAATTCTGGGTTAATATAATCTGGGTGGGTATG  150
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTC-TAAGAGA-GAGCAATTCTGGGTTAATATAATCTGGGTGGGTATG  137

seq1  ATGTCTAATTTG-AAAATAAAATTTAGCAGGCTATTATCATTTTCAATCA  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAATTTGAAAAATAAAATTTAGCAGGCTATTATCATTTTCAATCA  187

seq1  CTTGATATAGATCATATTTGAGGTTCTTTGAGGATACATGTAATAATTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATAGATCATATTTGAGGTTCTTTGAGGATACATGTAATAATTCC  237

seq1  AAAAAAAAAAGGAGAGAGAGAGAGAGAAACCTCTCTTGAGAGTATGAATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGGAGAGAGAGAGAGAGAAACCTCTCTTGAGAGTATGAATC  287

seq1  CATAAGCTCACTGGTTATTGAGTCCCTTATTCCTTATATAAGTAATTCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCTCACTGGTTATTGAGTCCCTTATTCCTTATATAAGTAATTCAT  337

seq1  GTCACCTCTAATTGCCCCATTTTGTTTTTGTTTTTGTTTTTTTCAGAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCTAATTGCCCCATTTTGTTTTTGTTTTTGTTTTTTTCAGAAAA  387

seq1  TCATTGCATATGTGGAAAGTATAGGAAGGTCTTGGATCAAGACAGCCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCATATGTGGAAAGTATAGGAAGGTCTTGGATCAAGACAGCCAGT  437

seq1  ACATTGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGAC  487

seq1  AAGCTTAGCAAGGTGATTCTTGAATCCCCCCAATGTACACCTTACAAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAGCAAGGTGATTCTTGAATCCCCCCAATGTACACCTTACAAAAC  537

seq1  TTATCACAGCTCTCTTCAATACTCGAACCAAAAAAGACTTAAGCCCAGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAGCTCTCTTCAATACTCGAACCAAAAAAGACTTAAGCCCAGGA  587

seq1  ACACTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTGTAAGTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTGTAAGTTTG  637

seq1  TTTTCTACCATTAGTCTCAATCAAGGAATCCACATGCAGAAGAAAAAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACCATTAGTCTCAATCAAGGAATCCACATGCAGAAGAAAAAACA  687

seq1  CAACCGAAATGCAGAATTTGAGAAGGTTTTTGTTTCTAAACATAAAGTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGAAATGCAGAATTTGAGAAGGTTTTTGTTTCTAAACATAAAGTCA  737

seq1  TGGTGAAACGAAACAATACTGGAGTGAACCCTTACAAATGTAGTGAATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAACGAAACAATACTGGAGTGAACCCTTACAAATGTAGTGAATTT  787

seq1  GACAAATATCTTACCCAGAGAGAAAAACTTCAAAGTCAGCAGAGAATTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATATCTTACCCAGAGAGAAAAACTTCAAAGTCAGCAGAGAATTTA  837

seq1  TCATGGAAAGAAACCTTACAAAAGTAGTAAAAGTGACAAATGCTTTACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAAGAAACCTTACAAAAGTAGTAAAAGTGACAAATGCTTTACCC  887

seq1  ATCAGATCCATCTTAGTATCCATCAGGGAATTCATGCAGAAGAGAAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCCATCTTAGTATCCATCAGGGAATTCATGCAGAAGAGAAAATT  937

seq1  TACAAATGTAGTGAATGTGACAAATGCTTTACCCACAAATCCCATCTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTAGTGAATGTGACAAATGCTTTACCCACAAATCCCATCTTAA  987

seq1  TATTCATCAGAGAATTCATACAGGAGAGAACCCTTACAAATGCAGTGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCAGAGAATTCATACAGGAGAGAACCCTTACAAATGCAGTGAAT  1037

seq1  GTGACAAATGTTTTAAACACAAATTCAGTTTTAGTATGCATCAGAGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATGTTTTAAACACAAATTCAGTTTTAGTATGCATCAGAGAATT  1087

seq1  C  1100
      |
seq2  C  1088

seq1: chr4_145114789_145115939
seq2: B6Ng01-100C12.g_69_1222

seq1  GAATTCTAAGTATGTTCTATGAGTTAGAAATGCTTCCAGCAATTTTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTATGTTCTATGAGTTAGAAATGCTTCCAGCAATTTTCAGA  50

seq1  CAGGCTTTAAGCATTCTGATTGCTATCTCTATGTTGCATCATGTGGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTAAGCATTCTGATTGCTATCTCTATGTTGCATCATGTGGTTTA  100

seq1  TATCATTAAGAATTTTCTATAGATGTTGATGAGATACTGTGCTGAAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTAAGAATTTTCTATAGATGTTGATGAGATACTGTGCTGAAGACT  150

seq1  CCTATTCAAAAGCATTAAGGAATATCCCATTTAATGACTTTGCTCTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCAAAAGCATTAAGGAATATCCCATTTAATGACTTTGCTCTTTTA  200

seq1  TTTTGGAGTTATAAGGCTCTCCTACTCCATGTTTTTCCCTTTCCTGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGTTATAAGGCTCTCCTACTCCATGTTTTTCCCTTTCCTGTAGC  250

seq1  TATGGTTCATGTAGGTCAATATTCTGAAGAGCAATCATGGTAGACAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTCATGTAGGTCAATATTCTGAAGAGCAATCATGGTAGACAGATG  300

seq1  CAGAGAACTTGCCTTGGGTGGGAAAGAGTCCTAAGGAGCTAATGGGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACTTGCCTTGGGTGGGAAAGAGTCCTAAGGAGCTAATGGGAGTG  350

seq1  GTAGGAGAATGACTTGTTAATGATGGATGCAAGCTGACAGTTCTGTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGAATGACTTGTTAATGATGGATGCAAGCTGACAGTTCTGTATTC  400

seq1  TGTGGAGACAAGTCTCTAAATAGCTCTTTGCAGATGAAACCTCCTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGACAAGTCTCTAAATAGCTCTTTGCAGATGAAACCTCCTTTGCA  450

seq1  TAAGCTACTTCCTTAGGAAATGCAAATCATTACAATCATTTACTCCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTACTTCCTTAGGAAATGCAAATCATTACAATCATTTACTCCTGGT  500

seq1  TCTCTCTTGATTATTCTGAGTCAGCATTTTAAAACCTTAGAACCTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTGATTATTCTGAGTCAGCATTTTAAAACCTTAGAACCTTTACT  550

seq1  CCTAGAAAAAAACAACAATACAAAAACAGAAGTACATTTGTTTTTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAAAAACAACAATACAAAAACAGAAGTACATTTGTTTTTGTTTG  600

seq1  TTTGCTTTGTTTTGTTCTTAAGCATAGCAGCTCCTATGTATGTTGCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTGTTTTGTTCTTAAGCATAGCAGCTCCTATGTATGTTGCTTGG  650

seq1  ATGCACTTCCTGGATATAGAGATTATTTTATTATTATTATTTTCTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTCCTGGATATAGAGATTATTTTATTATTATTATTTTCTTTTTT  700

seq1  TCTTTTCTCTCTCTCTT----TTTCTTTCTTTCTTTCTTTCTTTCTTTCT  746
      |||||||||||||||||    |||||||||||||||||||||||||||||
seq2  TCTTTTCTCTCTCTCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  750

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCTTCTTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCTTCTTTC  800

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  850

seq1  TCTTTCTTTCT--TTCT---TTCTTTCTCTCCCTTTCTTCCTTTCTTCCT  891
      || ||||||||  ||||   ||||||||||||||||||||||||| ||||
seq2  TC-TTCTTTCTTCTTCTTTCTTCTTTCTCTCCCTTTCTTCCTTTC-TCCT  898

seq1  TTCTTCCTTCCTTCCTTCCTTCCTTCCATTTTTCCCACACTCCAGATTTT  941
      ||||||||||| |||||||||||||||| ||||||||||||||||| |||
seq2  TTCTTCCTTCC-TCCTTCCTTCCTTCCA-TTTTCCCACACTCCAGA-TTT  945

seq1  ATTGCCCTCCCGGTCCATCCTCTAACTGTTCCACATCCCACACTTCCTAC  991
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTGCCCTCCCGGTCCATCCTCTAACTG-TCCACATCCCACACTTCCTAC  994

seq1  CCATCTCTCTGTCTCCATAAGGATATCCCCTCCCCCCCCCCCACCTGACC  1041
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCATCTCTCTGTCTCCATAA-GATATCCCCTCCCCCCCCCCCACCTGACC  1043

seq1  ATACCTCTAAAGGCCCTGGAGCCTCCAATCTCTC-CAGGGGTT-GGGTGC  1089
      ||||||||||||| |||||||||||||||||||| || ||||| ||||||
seq2  ATACCTCTAAAGG-CCTGGAGCCTCCAATCTCTCTCAAGGGTTGGGGTGC  1092

seq1  ATGCTCCCTGATTGAACCCAGACCCAGCATTCTTCCAC--TGCATCTGTG  1137
      |||   |||||||||  || ||||||||| ||||||||   |||||||||
seq2  ATGGCTCCTGATTGA--CCCGACCCAGCA-TCTTCCACCTGGCATCTGTG  1139

seq1  CT-AGGGGCCTCTTA  1151
      || |||| |||||||
seq2  CTGAGGGCCCTCTTA  1154