BAC Information

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BAC

Clone NameB6Ng01-101B16
Chromosome4 (Build37)
Map Location 44,421,365 - 44,550,768
singlet/doubletdoublet
Overlap genePax5
Upstream geneRusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
Downstream gene5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101B16.bB6Ng01-101B16.g
ACCDH910400DH910401
length2311,076
definitionDH910400|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B16, 5' end.DH910401|Mus musculus domesticus DNA, BAC clone: B6Ng01-101B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,421,365 - 44,421,595)(44,549,685 - 44,550,768)
sequence
actctgtagaccaggctggcctcgtactcatagagatccacctgcctctg
cctcctgtcctgagtgctgggattaagggcgggggccttattaaattaaa
ttaaattaaattatttttattgggttacttttcttctaaaagctttaaag
ggcatggtggtgcacccttgtaatcccagaatattgaagacagaaggcat
ctggggctacagagcatgagagaaaggggga
gaattcccagcacagaggatccacactagagacgaggtcatgagggacgg
aaccgacacactagggtccctgaggtgcctcagccagtgccaacagccca
gcgggctaaggttggacttgtgcaggtgaacccagagagaccccacccag
cacctaggacggctccgtggcctccattcccattgataccaagggctttg
gggtgaaatagacagctcactggatgagaggatgaccccggtatgctgtt
attggttaccaaaagcacccgagactcacggaagggatgagcaccatcaa
cagccagcagttaaacggacttgagcccactgccttttctgaacctgatt
taacatttgtcttctgtttctctctgcccacctactgcagggagtgaatt
ttctggaagtccctacagccaccctcagtattcttcctacaatgattctt
ggaggttccccaacccagggctgcttggtgagtactaacctgtggcgtcc
ctgggtctgtggctgccccacatgtcctctttgctgggccacagtccctt
ctgaggtctggtcatatctttggccatgtgtgtggttctgttctggtggt
cttagtacagttaatgccatggcagctcatggaggagggaatgtgaggga
gaacagaagcaagggaaagtgctcgcccatgagtaactcacatttcttaa
gaaccatttgaaaagagtgaaaattccctaaataggaggcactgaaaata
caaactcgcattgattggtgctggctgctgagaaaactgtcttgctaagg
gctctgaggcccagtgattgattaatgatgtctgccatgggcatcattgg
tgccagctccattaggaaccagctgccctgttgcttgccaagcatgctgt
gtagggttcagctggtgcctaacttctatccaagattcaaattggcagaa
catccgttgcctaatcagcctggctgtgattatcattgtattatttacaa
acaacgacgacctcaccaacacacacacacacccaggcatcctactgttt
ctaaggtctagaaagatgctttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_44421365_44421595
seq2: B6Ng01-101B16.b_52_282

seq1  ACTCTGTAGACCAGGCTGGCCTCGTACTCATAGAGATCCACCTGCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCCTCGTACTCATAGAGATCCACCTGCCTCTG  50

seq1  CCTCCTGTCCTGAGTGCTGGGATTAAGGGCGGGGGCCTTATTAAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTCCTGAGTGCTGGGATTAAGGGCGGGGGCCTTATTAAATTAAA  100

seq1  TTAAATTAAATTATTTTTATTGGGTTACTTTTCTTCTAAAAGCTTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAAATTATTTTTATTGGGTTACTTTTCTTCTAAAAGCTTTAAAG  150

seq1  GGCATGGTGGTGCACCCTTGTAATCCCAGAATATTGAAGACAGAAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTGGTGCACCCTTGTAATCCCAGAATATTGAAGACAGAAGGCAT  200

seq1  CTGGGGCTACAGAGCATGAGAGAAAGGGGGA  231
      |||||||||||||||||||||||||||||||
seq2  CTGGGGCTACAGAGCATGAGAGAAAGGGGGA  231

seq1: chr4_44549685_44550768
seq2: B6Ng01-101B16.g_70_1145 (reverse)

seq1  AAACAAAGCACTCTTCTTGAACCTTGGAGAACAGTTAGGATGCTTGGGGT  50
      |||||||||| ||||  |  ||||| || ||||| |||||||| |||   
seq2  AAACAAAGCA-TCTTTCTAGACCTTAGA-AACAG-TAGGATGCCTGG---  44

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTAAATATACCGATGA  100
      ||||||||||||||  ||| |   ||   ||||||||||||   | ||||
seq2  GTGTGTGTGTGTGTTGGTGAGGTCGTCGTTGTTTGTAAATAATACAATGA  94

seq1  TATTCACAGGCCAGGCTGGCTAAGGCAACGGATGTTCTGCCAATTTGAGT  150
      || ||||| |||||||| | | |||||||||||||||||||||||||| |
seq2  TAATCACA-GCCAGGCT-GATTAGGCAACGGATGTTCTGCCAATTTGAAT  142

seq1  CTTGGATAGAGGTTAGGCACCAGCTGAGCCCTACACAGCATGCCTTGGCA  200
      |||||||||| |||||||||||||||| |||||||||||||| |||||||
seq2  CTTGGATAGAAGTTAGGCACCAGCTGAACCCTACACAGCATG-CTTGGCA  191

seq1  AGCCACAGGGCAGCTGGTTCCTAATGGAGCTGGCACCAATGATGCCCATG  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGGGCAGCTGGTTCCTAATGGAGCTGGCACCAATGATGCCCATG  241

seq1  GCAGACATCATTAATCAATCACTGGGCCTCAGAGCCCTTAGCAAGACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATCATTAATCAATCACTGGGCCTCAGAGCCCTTAGCAAGACAGT  291

seq1  TTTCTCAGCAGCCAGCACCAATCAATGCGAGTTTGTATTTTCAGTGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGCAGCCAGCACCAATCAATGCGAGTTTGTATTTTCAGTGCCTC  341

seq1  CTATTTAGGGAATTTTCACTCTTTTC-AATGGTTCTTAAGAAATGTGAGT  399
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTATTTAGGGAATTTTCACTCTTTTCAAATGGTTCTTAAGAAATGTGAGT  391

seq1  TACTCATGGGCGAGCACTTTCCCTTGCTTCTGTTCTCCCTCACATTCCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGGGCGAGCACTTTCCCTTGCTTCTGTTCTCCCTCACATTCCCT  441

seq1  CCTCCATGAGCTGCCATGGCATTAACTGTACTAAGACCACCAGAACAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGAGCTGCCATGGCATTAACTGTACTAAGACCACCAGAACAGAA  491

seq1  CCACACACATGGCCAAAGATATGACCAGACCTCAGAAGGGACTGTGGCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACATGGCCAAAGATATGACCAGACCTCAGAAGGGACTGTGGCCC  541

seq1  AGCAAAGAGGACATGTGGGGCAGCCACAGACCCAGGGACGCCACAGGTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGAGGACATGTGGGGCAGCCACAGACCCAGGGACGCCACAGGTTA  591

seq1  GTACTCACCAAGCAGCCCTGGGTTGGGGAACCTCCAAGAATCATTGTAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCACCAAGCAGCCCTGGGTTGGGGAACCTCCAAGAATCATTGTAGG  641

seq1  AAGAATACTGAGGGTGGCTGTAGGGACTTCCAGAAAATTCACTCCCTGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACTGAGGGTGGCTGTAGGGACTTCCAGAAAATTCACTCCCTGCA  691

seq1  GTAGGTGGGCAGAGAGAAACAGAAGACAAATGTTAAATCAGGTTCAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGGGCAGAGAGAAACAGAAGACAAATGTTAAATCAGGTTCAGAAA  741

seq1  AGGCAGTGGGCTCAAGTCCGTTTAACTGCTGGCTGTTGATGGTGCTCATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTGGGCTCAAGTCCGTTTAACTGCTGGCTGTTGATGGTGCTCATC  791

seq1  CCTTCCGTGAGTCTCGGGTGCTTTTGGTAACCAATAACAGCATACCGGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCGTGAGTCTCGGGTGCTTTTGGTAACCAATAACAGCATACCGGGG  841

seq1  TCATCCTCTCATCCAGTGAGCTGTCTATTTCACCCCAAAGCCCTTGGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTCTCATCCAGTGAGCTGTCTATTTCACCCCAAAGCCCTTGGTAT  891

seq1  CAATGGGAATGGAGGCCACGGAGCCGTCCTAGGTGCTGGGTGGGGTCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGAATGGAGGCCACGGAGCCGTCCTAGGTGCTGGGTGGGGTCTCT  941

seq1  CTGGGTTCACCTGCACAAGTCCAACCTTAGCCCGCTGGGCTGTTGGCACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCACCTGCACAAGTCCAACCTTAGCCCGCTGGGCTGTTGGCACT  991

seq1  GGCTGAGGCACCTCAGGGACCCTAGTGTGTCGGTTCCGTCCCTCATGACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGCACCTCAGGGACCCTAGTGTGTCGGTTCCGTCCCTCATGACC  1041

seq1  TCGTCTCTAGTGTGGATCCTCTGTGCTGGGAATTC  1084
      |||||||||||||||||||||||||||||||||||
seq2  TCGTCTCTAGTGTGGATCCTCTGTGCTGGGAATTC  1076