BAC Information

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BAC

Clone NameB6Ng01-102P10
Chromosome4 (Build37)
Map Location 12,344,063 - 12,506,816
singlet/doubletdoublet
Overlap genenone
Upstream gene1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102P10.bB6Ng01-102P10.g
ACCDH911703DH911704
length1,0941,136
definitionDH911703|Mus musculus domesticus DNA, BAC clone: B6Ng01-102P10, 5' end.DH911704|Mus musculus domesticus DNA, BAC clone: B6Ng01-102P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,505,715 - 12,506,816)(12,344,063 - 12,345,207)
sequence
gaattctactaatttcctagcccacagaaactgggcagaagaagttgctc
ttgttcagtgtttatgtttaaatagtttagtagagctgcattacatggca
ccatgtaactacaaactcacctggatagcatgagttagctgcatggccta
agaggcagtctcgcatactgattaggagtagaattagtggagttagacag
atctgagtttgaaccctacataagcaatttcccaagttatgtttcctttc
taaatctcagtttcctcccctgaagaatacataatgaaatttcttgtctg
tcacctcgctcagggtcacacatcatagaaatacataacacgggatccat
gtgtagatcctaaatcctgagtgacagaataggtgtacacctgtttgttc
tgagtgtgtgtgtggcggagggggttatgtgtagcacacgcttcagttaa
aaaaagaaacccacttgcattaagcaccgacgatattggctgcttggtga
gacaggcacttcacgtgttctcatctgtctgtaaatacaatgccttcctt
gatatcacttgggaccacactactgacaagctccttgtcagatgctggga
accttggtccagaggcagagtgcacacttgtcacatgctgtgtgccatcc
taggttcaatccctcgcattgccaaaccagaattttaaaaataataaaat
ctttctgctttcagaagaattggtccaagatgagtattgtatgataaaac
ccactgaattatatttacttttattgtagcaaattatccttctcacaaaa
gtcgaagatatctaattaactaaaagccaatgaaaacagtgtgctatgca
taaacgctgagctgtcctttttttatttcaggaagggttactagcatgcg
gagggagtagagaaactgaggtttagagagtggttttgcttgtgggaagc
agctgcatgtatgtgcccatttcctggtcagttcctctctcgtctctata
tcaagactgtattattgacttacaggaccacaagaaacaaaattattttt
tttatttattcagcagctcactgtatgaggactgaaaacatcac
gaattcctctgggtttgtcttgaggatgtttccaggaagttttaactgat
gagggaaagcatcttgaatgtaggtagcactattccatctgctgggatgc
cagactgaataaaaatgtgagaaagggaggtgagtgccagcattactttc
tccatttccctaccatggacacaatgtgacctgccacctcatgctcttgt
cctctgcaacatgctgtatctttaaaccatgagccaaaagaaacccatct
ttcctaaagttgcttttgttgggtaatgtgtcacagcaatgagaaaagta
gctaatgagttaatttccctaaatctttataaatacattgaaaaggaaca
atccaagaaggggcttagagaaaggccaacagagctctttttgtacagcc
cattctctagataggtataagcccctagttctccataatgtctctgaaga
tcataggtaaaagataaaatagcttgaggaaatctttatgtattctctgg
ctattactttcagaaatgtccctattactttcagaagaaaatccagactg
tctaatgttgcctcagagatggtgtttgcctgtttctcccaccatccttg
ctccattcctcactcccaacatggacatctttgctccagtcttcctgaat
tctgtgcagcatcctgcactgtgctgctttctgcccacttcatcatctta
tgctccagtttcttcaaactccctgccttggcatcttgctcttttgccct
agcatcttatgactctttatcatgcagaccccatccattacctacaatat
ttatattcaccttagtttgtttttattctttactaaagtcagacttaatc
ccatgattaagatttatttcagtctatcacactggatttaaatccccttg
aagtaaatgactactgttggccattttattgcccaggatattatggcaca
cagtcacaggcacacaaacacacaaacactcagaccaacatacatggctt
tatagtttctgttaaaaaaggaactacatgacttgttttgatgagagtga
ctttaaaatttttttctacccttttaattaactatggtaaaatggacttg
ctttggaatcaattgatgagctctagctgcctctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12505715_12506816
seq2: B6Ng01-102P10.b_48_1141 (reverse)

seq1  GTGATGTTTTCAGTTCTTCATTACAGTGAGCTGGCTGAATAAATAAAAAA  50
      ||||||||||||| || ||| ||||||||||| |||||||||||||||||
seq2  GTGATGTTTTCAG-TCCTCA-TACAGTGAGCT-GCTGAATAAATAAAAAA  47

seq1  AATTAATTTTGTTTTCTTGTGGTCTTGTAAGTC-ATAATACAGTCTTGAT  99
      || |||||||| |||||||||||| |||||||| ||||||||||||||| 
seq2  AA-TAATTTTG-TTTCTTGTGGTCCTGTAAGTCAATAATACAGTCTTGA-  94

seq1  TATAGAAGACGAGAGAGGAACTGACCAGGAAATGGGCACATACATGCAGC  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATAG-AGACGAGAGAGGAACTGACCAGGAAATGGGCACATACATGCAG-  142

seq1  CTGCTTCCCACAAGCAAAACCACTCTCTAAACCTCAGTTTCTCTACTCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCACAAGCAAAACCACTCTCTAAACCTCAGTTTCTCTACTCCC  192

seq1  TCCGCATGCTAGTAACCCTTTCCTGAAATAAAAAAAGGACAGCTCAGCGT  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCGCATGCTAGTAACCC-TTCCTGAAATAAAAAAAGGACAGCTCAGCGT  241

seq1  TTATGCATAGCACACTGTTTTCATTGGCTTTTAGTTAATTAGATATCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATAGCACACTGTTTTCATTGGCTTTTAGTTAATTAGATATCTTC  291

seq1  GACTTTTGTGAGAAGGATAATTTGCTACAATAAAAGTAAATATAATTCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGTGAGAAGGATAATTTGCTACAATAAAAGTAAATATAATTCAG  341

seq1  TGGGTTTTATCATACAATACTCATCTTGGACCAATTCTTCTGAAAGCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTATCATACAATACTCATCTTGGACCAATTCTTCTGAAAGCAGA  391

seq1  AAGATTTTATTATTTTTAAAATTCTGGTTTGGCAATGCGAGGGATTGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTATTATTTTTAAAATTCTGGTTTGGCAATGCGAGGGATTGAAC  441

seq1  CTAGGATGGCACACAGCATGTGACAAGTGTGCACTCTGCCTCTGGACCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATGGCACACAGCATGTGACAAGTGTGCACTCTGCCTCTGGACCAA  491

seq1  GGTTCCCAGCATCTGACAAGGAGCTTGTCAGTAGTGTGGTCCCAAGTGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAGCATCTGACAAGGAGCTTGTCAGTAGTGTGGTCCCAAGTGAT  541

seq1  ATCAAGGAAGGCATTGTATTTACAGACAGATGAGAACACGTGAAGTGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAAGGCATTGTATTTACAGACAGATGAGAACACGTGAAGTGCCT  591

seq1  GTCTCACCAAGCAGCCAATATCGTCGGTGCTTAATGCAAGTGGGTTTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACCAAGCAGCCAATATCGTCGGTGCTTAATGCAAGTGGGTTTCTT  641

seq1  TTTTTAACTGAAGCGTGTGCTACACATAACCCCCTCCGCCACACACACAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACTGAAGCGTGTGCTACACATAACCCCCTCCGCCACACACACAC  691

seq1  TCAGAACAAACAGGTGTACACCTATTCTGTCACTCAGGATTTAGGATCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAAACAGGTGTACACCTATTCTGTCACTCAGGATTTAGGATCTA  741

seq1  CACATGGATCCCGTGTTATGTATTTCTATGATGTGTGACCCTGAGCGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGATCCCGTGTTATGTATTTCTATGATGTGTGACCCTGAGCGAGG  791

seq1  TGACAGACAAGAAATTTCATTATGTATTCTTCAGGGGAGGAAACTGAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACAAGAAATTTCATTATGTATTCTTCAGGGGAGGAAACTGAGAT  841

seq1  TTAGAAAGGAAACATAACTTGGGAAATTGCTTATGTAGGGTTCAAACTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGGAAACATAACTTGGGAAATTGCTTATGTAGGGTTCAAACTCA  891

seq1  GATCTGTCTAACTCCACTAATTCTACTCCTAATCAGTATGCGAGACTGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCTAACTCCACTAATTCTACTCCTAATCAGTATGCGAGACTGCC  941

seq1  TCTTAGGCCATGCAGCTAACTCATGCTATCCAGGTGAGTTTGTAGTTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGCCATGCAGCTAACTCATGCTATCCAGGTGAGTTTGTAGTTACA  991

seq1  TGGTGCCATGTAATGCAGCTCTACTAAACTATTTAAACATAAACACTGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCATGTAATGCAGCTCTACTAAACTATTTAAACATAAACACTGAA  1041

seq1  CAAGAGCAACTTCTTCTGCCCAGTTTCTGTGGGCTAGGAAATTAGTAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAACTTCTTCTGCCCAGTTTCTGTGGGCTAGGAAATTAGTAGAA  1091

seq1  TTC  1102
      |||
seq2  TTC  1094

seq1: chr4_12344063_12345207
seq2: B6Ng01-102P10.g_66_1201

seq1  GAATTCCTCTGGGTTTGTCTTGAGGATGTTTCCAGGAAGTTTTAACTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGGGTTTGTCTTGAGGATGTTTCCAGGAAGTTTTAACTGAT  50

seq1  GAGGGAAAGCATCTTGAATGTAGGTAGCACTATTCCATCTGCTGGGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAGCATCTTGAATGTAGGTAGCACTATTCCATCTGCTGGGATGC  100

seq1  CAGACTGAATAAAAATGTGAGAAAGGGAGGTGAGTGCCAGCATTACTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAATAAAAATGTGAGAAAGGGAGGTGAGTGCCAGCATTACTTTC  150

seq1  TCCATTTCCCTACCATGGACACAATGTGACCTGCCACCTCATGCTCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCCCTACCATGGACACAATGTGACCTGCCACCTCATGCTCTTGT  200

seq1  CCTCTGCAACATGCTGTATCTTTAAACCATGAGCCAAAAGAAACCCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAACATGCTGTATCTTTAAACCATGAGCCAAAAGAAACCCATCT  250

seq1  TTCCTAAAGTTGCTTTTGTTGGGTAATGTGTCACAGCAATGAGAAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAAGTTGCTTTTGTTGGGTAATGTGTCACAGCAATGAGAAAAGTA  300

seq1  GCTAATGAGTTAATTTCCCTAAATCTTTATAAATACATTGAAAAGGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGAGTTAATTTCCCTAAATCTTTATAAATACATTGAAAAGGAACA  350

seq1  ATCCAAGAAGGGGCTTAGAGAAAGGCCAACAGAGCTCTTTTTGTACAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGAAGGGGCTTAGAGAAAGGCCAACAGAGCTCTTTTTGTACAGCC  400

seq1  CATTCTCTAGATAGGTATAAGCCCCTAGTTCTCCATAATGTCTCTGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTAGATAGGTATAAGCCCCTAGTTCTCCATAATGTCTCTGAAGA  450

seq1  TCATAGGTAAAAGATAAAATAGCTTGAGGAAATCTTTATGTATTCTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGTAAAAGATAAAATAGCTTGAGGAAATCTTTATGTATTCTCTGG  500

seq1  CTATTACTTTCAGAAATGTCCCTATTACTTTCAGAAGAAAATCCAGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACTTTCAGAAATGTCCCTATTACTTTCAGAAGAAAATCCAGACTG  550

seq1  TCTAATGTTGCCTCAGAGATGGTGTTTGCCTGTTTCTCCCACCATCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTTGCCTCAGAGATGGTGTTTGCCTGTTTCTCCCACCATCCTTG  600

seq1  CTCCATTCCTCACTCCCAACATGGACATCTTTGCTCCAGTCTTCCTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCCTCACTCCCAACATGGACATCTTTGCTCCAGTCTTCCTGAAT  650

seq1  TCTGTGCAGCATCCTGCACTGTGCTGCTTTCTGCCCACTTCATCATCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCAGCATCCTGCACTGTGCTGCTTTCTGCCCACTTCATCATCTTA  700

seq1  TGCTCCAGTTTCTTCAAACTCCCTGCCTTGGCATCTTGCTCTTTTGCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGTTTCTTCAAACTCCCTGCCTTGGCATCTTGCTCTTTTGCCCT  750

seq1  AGCATCTTATGACTCTTTATCATGCAGACCCCATCCATTACCTACAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTATGACTCTTTATCATGCAGACCCCATCCATTACCTACAATAT  800

seq1  TTATATTCACCTTAGTTTGTTTTTATTCTTTACTAAAGTCAGACTTAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCACCTTAGTTTGTTTTTATTCTTTACTAAAGTCAGACTTAATC  850

seq1  CCATGATTAAGATTTATTTCAGTCTATCACACTGGATTTAAATCCCCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATTAAGATTTATTTCAGTCTATCACACTGGATTTAAATCCCCTTG  900

seq1  AAGTAAATGACTACTGTTGGCCATTTTATTGCCCAGGAATATTATGGCAC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGTAAATGACTACTGTTGGCCATTTTATTGCCCAGG-ATATTATGGCAC  949

seq1  ACAGTCACAGGCACACAAACACACAAACACTCAGACACACATACATGGCT  1000
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  ACAGTCACAGGCACACAAACACACAAACACTCAGACCAACATACATGGCT  999

seq1  TAATAGTTTCTGTTAAAAAAGGAAACTAACCATGACTTGTATTTGAATGA  1050
      | |||||||||||||||||||| |||||  |||||||||| |||| ||||
seq2  TTATAGTTTCTGTTAAAAAAGG-AACTA--CATGACTTGT-TTTG-ATGA  1044

seq1  GAGTTGACTTTAATA-TTTTTTCTACCCTTTTAATAAACTAT-GTAAAAA  1098
      ||| ||||||||| | ||||||||||||||||||| |||||| |||||| 
seq2  GAG-TGACTTTAAAATTTTTTTCTACCCTTTTAATTAACTATGGTAAAAT  1093

seq1  TGACTTGCTTT-GAATCAAATTTGATGAGGCTTCTAGCTGGCCTCTGG  1145
       |||||||||| |||||||  ||||||||   ||||||| ||||||||
seq2  GGACTTGCTTTGGAATCAA--TTGATGAG--CTCTAGCT-GCCTCTGG  1136