BAC Information

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BAC

Clone NameB6Ng01-103I06
Chromosome4 (Build37)
Map Location 113,417,194 - 113,418,303
singlet/doubletsinglet
Overlap geneLOC242627
Upstream geneA030001H23Rik, LOC433745, LOC545668, LOC230622, LOC100040607
Downstream geneLOC100040625, A630098G03Rik, LOC666048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103I06.b
ACCDH912083
length1,116
definitionDH912083|Mus musculus domesticus DNA, BAC clone: B6Ng01-103I06, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttcgccatgacttccgttccatagattatatctataaattact
ctgcatcatgggtatgggcacacatgattcaatattgagctttatcatta
acttgaaggggaatcaaccttgttaaatttatctcactacttccaataaa
ggcaactcccccattttaaacagcattgtctaaagctccttcagtaaaag
cagagaatataggaacagaatataaataaaggcattcagaaacatacatt
cccaactgcttatatgatggccatactgcatccattgaaagcatctacat
taagtggatggattcttgtcacagagaactttggcaagaatgtaccttaa
tttgtggtttatatttttgtgtcctacatacatcacatatagagacaaat
ttatttaagatattttcatgaagacataacacaataaattgcagttcttg
accctcaccaaaaagaaatcattttttctgtgtctatcccagacaatctt
ggtttttattatcatcagacatatataacattgtacttgtatctatgtta
agtcttcaatacaagaagagaaaaatcacgatgtctgttgttctgcatta
tataagttaaaatattaactttatgttacattcacatcatggcctaaaaa
tgaaaattatataatttgaagccgaatgaaacaatgtatttgatagataa
actgaaggtagagtgaaaagtttggaaagagaagcaagagaaaatggaag
agggagaggacacagaataagaggaaggagaagaatgaggaatagaaacg
catggcttggagaaactacaagttctaaaaggtctcatagatgtggaaga
tggtagtatagtggtagatttgcttattctaggcacacagcatgaattct
taataatcgagttgtgttttcattgctggaacatttgtgggttgtatatg
taacacacgaaatttgcacttgctgggcgtggtggcacacgccttaatct
cagatctgggaggcagagcagtgatactgagttcaaagcagctgtcttca
agcgagtcagacagtagagctatacgagaaccctatctttaaacactgag
ttaaaagtcagtgccc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_113417194_113418303
seq2: B6Ng01-103I06.b_72_1160

seq1  ATAGCTTATATCTATAAATTACTCTGCATCATGGGTATGGGCACACATGA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTATATCTATAAATTACTCTGCATCATGGGTATGGGCACACATGA  50

seq1  TTCAATATAAAGCTTTATCATTAACTTGAAGGGGAATCAACATTGTTAAA  100
      ||||||||  ||||||||||||||||||||||||||||||| ||||||||
seq2  TTCAATATTGAGCTTTATCATTAACTTGAAGGGGAATCAACCTTGTTAAA  100

seq1  TTTATCTCAGTAATTCAAATAAAGGCAACTCCAGCATTTTAAACAGCATT  150
      ||||||||| || ||| |||||||||||||||  ||||||||||||||||
seq2  TTTATCTCACTACTTCCAATAAAGGCAACTCCCCCATTTTAAACAGCATT  150

seq1  GTCTAAAGCTCCTTCAGTAAAAGCAGAGAATATAGGAACAGAATATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAGCTCCTTCAGTAAAAGCAGAGAATATAGGAACAGAATATAAAT  200

seq1  AAAGGCATTCAGAAACATACATTCCCAACTGCTTATATGATGGCCATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATTCAGAAACATACATTCCCAACTGCTTATATGATGGCCATACT  250

seq1  GCATCCATTGAAAGCATCTACATTAAGTGGATGGATTCTTGTCACAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATTGAAAGCATCTACATTAAGTGGATGGATTCTTGTCACAGAGA  300

seq1  ACTTTGGCAAGAATGTACCTTAATTTGTGGTTTATATTTTTGTGTCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCAAGAATGTACCTTAATTTGTGGTTTATATTTTTGTGTCCTAC  350

seq1  ATACATCACATATAGAGACAAATTTATTTAAGATATTTTCATGAAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCACATATAGAGACAAATTTATTTAAGATATTTTCATGAAGACAT  400

seq1  AACACAATAAATTGCAGTTCTTGACCCTCACCAAAAAGAAATCATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATAAATTGCAGTTCTTGACCCTCACCAAAAAGAAATCATTTTTT  450

seq1  CTGTGTCTATCCCAGACAATCTTGGTTTTTATTATCATCAGACATATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTATCCCAGACAATCTTGGTTTTTATTATCATCAGACATATATA  500

seq1  ACATTGTACTTGTATCTATGTTAAGTCTTCAATACAAGAAGAGAAAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTACTTGTATCTATGTTAAGTCTTCAATACAAGAAGAGAAAAATC  550

seq1  ACGATGTCTGTTGTTCTGCATTATATAAGTTAAAATATTAACTTTATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGTCTGTTGTTCTGCATTATATAAGTTAAAATATTAACTTTATGTT  600

seq1  ACATTCACATCATGGCCTAAAAATGAAAATTATATAATTTGAAGCCGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACATCATGGCCTAAAAATGAAAATTATATAATTTGAAGCCGAAT  650

seq1  GAAACAATGTATTTGATAGATAAACTGAAGGTAGAGTGAAAAGTTTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATGTATTTGATAGATAAACTGAAGGTAGAGTGAAAAGTTTGGAA  700

seq1  AGAGAAGCAAGAGAAAATGGAAGAGGGAGAGGACACAGAATAAGAGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCAAGAGAAAATGGAAGAGGGAGAGGACACAGAATAAGAGGAAG  750

seq1  GAGAAGAATGAGGAATAGAAACGCATGGCTTGGAGAAACTACAAGTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAATGAGGAATAGAAACGCATGGCTTGGAGAAACTACAAGTTCTA  800

seq1  AAAGGTCTCATAGATGTGGAAGATGGTAGTATAGTGGTAGATTTGCTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCTCATAGATGTGGAAGATGGTAGTATAGTGGTAGATTTGCTTAT  850

seq1  TCTAGGCACACAGCATGAATTCTTAATAATCGAGTTGTGTTTTCATTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCACACAGCATGAATTCTTAATAATCGAGTTGTGTTTTCATTGCT  900

seq1  GGAACATTTGTGGGTTGTATATGTAACACAAGAAATTTGCACTTGCTGGG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAACATTTGTGGGTTGTATATGTAACACACGAAATTTGCACTTGCTGGG  950

seq1  CGTGGTGGCACACGCCTTTAATCCCAGAACTTGGGAGGCAGAGGCAGGTG  1000
      |||||||||||||||| |||||| |||| | ||||||||||| ||| |||
seq2  CGTGGTGGCACACGCC-TTAATCTCAGATC-TGGGAGGCAGA-GCA-GTG  996

seq1  GATTACTGAGTTCAAGGCCAGCCTGGTCTACAAAGCGAGTTCCAGGACAG  1050
         |||||||||||| | ||||   |||| | ||||||||  || |||||
seq2  --ATACTGAGTTCAAAG-CAGC--TGTCTTC-AAGCGAGT--CA-GACAG  1037

seq1  CCAGAGCTATACAGAGAAACCCTATCTTGAAAAACCACCTGAGGTAAAAA  1100
        |||||||||| ||| ||||||||||| ||| |    |||| || ||||
seq2  -TAGAGCTATAC-GAG-AACCCTATCTTTAAACA----CTGA-GTTAAAA  1079

seq1  GTCAGTGCCC  1110
      ||||||||||
seq2  GTCAGTGCCC  1089