BAC Information

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BAC

Clone NameB6Ng01-103M13
Chromosome4 (Build37)
Map Location 147,886,119 - 147,887,344
singlet/doubletsinglet
Overlap geneFrap1
Upstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Angptl7
Downstream geneExosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103M13.bB6Ng01-103M13.g
ACCDH912268DH912269
length1,231733
definitionDH912268|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M13, 5' end.DH912269|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggacctctggaagagcagtcagtgctcttaaccactgagccat
ctctccagcccaccttctgtttctttctagaaaggtaaaaagtagagact
tggctccaaagtcagttggctgctaccttgagaaagttactttggatttc
tgggggtttttcttcagtctgtaaggcttcccctgactcttaaggatgaa
gtgtgcaatgcaagggaaaactcgttcacatggagtagaaacccgcagtg
gcgagtgctgtgaactcctagcatgggcttcactctgggatggatactcc
acctgcttcatttggctccatgctcacagggacactacgaagtggctatt
atcattatcccctttctcaagtgaggggactatggacccagcaggatgaa
cacctgtctgagctaacagagcaaaacaaggcagggccaggacattttct
gggcaggccaggaccaagaccaccattcagcctagcccatgacctgtgtg
ctacccatggcagagccctgtgcctgtccctgagttcacactcactacag
tgcgttagaaactggctaattccccaaggggacaataaaggcatcctttt
aatttctatctgatacccagggactgttgcattcttactcatgtaggtgc
ttctctgctgccgtccttgtctattataaacaaatcattcccatgattcc
ttgtggtttgacagggtgctttgattaaccatgaatttataaagcactaa
cttaatcagtttaacactgggaccccggaggttcaggaaactccgggtcc
atatatttgatgtggagccttttattaattgtgtaggtcacttacagtgc
tttgccattatcaagaggcaggctcttctgtctgatgtccagcactgtgc
ctcattggcctggaacaacaggctttctttcacatcttaaacacatattg
cctgtaaacagactgagggcagcctctctcagatgacacaaaacacaaag
atgacatctcagcgtcttttgccacgtctttgtttgcggaagcagaaagc
accactgtgtgctccctcagaacaaggctgtactctgctgcaatatcccc
agaagcttgggccccttgagtctgaggaacagaagtcctttccaacacat
ctggtgccttggggtgatcctgccagcaaatgggcttatgctccaatgtc
tcgagcccttaaatgaaaggctctccactcc
gaattccagcaccccagagacagaagcagggggatctctgtgacacatgc
acaaagctctggggtcaatctttaataacgagtgggggggagacctaggg
ttcactctctccacccatatctctctctccaatgctccactgctctgttt
tgctgtgacccttagtccaatcctagtcaaacttcagtattcaggggaga
ctgttctctttccttcttcttgttcgtccttctccccatggtcggtccaa
gcccagttttgtctgctgagtggtagcatgggagccacttaaggagggag
ccattgcttgacatgagaggaagaaaacaatgaagacatctgtcagagct
tcatccagtcaccatggatgtgagtgacactttgctgagtcagatgatgg
ctcttagagccagaaagagcagttcctcggtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgccatgcacgctcgcacaaacagtgaacggctgcaggga
agcacactttaaatcccatcagcactgtccactgggctctcccgtccaga
caaccgggagagccatccatcaaacccagatttgtggcactgccagtttc
tttggtataaatacttctaccatggccaacatcagcctggcaatgtgcag
tctgagccacactggagaacagctgccctccaacacatctttccatgggg
ttccttagttacacatcaaaaacaacctccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147886119_147887344
seq2: B6Ng01-103M13.b_44_1274

seq1  GAATTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCAT  50

seq1  CTCTCCAGCCCACCTTCTGTTTCTTTCTAGAAAGGTAAAAAGTAGAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCACCTTCTGTTTCTTTCTAGAAAGGTAAAAAGTAGAGACT  100

seq1  TGGCTCCAAAGTCAGTTGGCTGCTACCTTGAGAAAGTTACTTTGGATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCAAAGTCAGTTGGCTGCTACCTTGAGAAAGTTACTTTGGATTTC  150

seq1  TGGGGGTTTTTCTTCAGTCTGTAAGGCTTCCCCTGACTCTTAAGGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTTTTCTTCAGTCTGTAAGGCTTCCCCTGACTCTTAAGGATGAA  200

seq1  GTGTGCAATGCAAGGGAAAACTCGTTCACATGGAGTAGAAACCCGCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAATGCAAGGGAAAACTCGTTCACATGGAGTAGAAACCCGCAGTG  250

seq1  GCGAGTGCTGTGAACTCCTAGCATGGGCTTCACTCTGGGATGGATACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTGCTGTGAACTCCTAGCATGGGCTTCACTCTGGGATGGATACTCC  300

seq1  ACCTGCTTCATTTGGCTCCATGCTCACAGGGACACTACGAAGTGGCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTCATTTGGCTCCATGCTCACAGGGACACTACGAAGTGGCTATT  350

seq1  ATCATTATCCCCTTTCTCAAGTGAGGGGACTATGGACCCAGCAGGATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATCCCCTTTCTCAAGTGAGGGGACTATGGACCCAGCAGGATGAA  400

seq1  CACCTGTCTGAGCTAACAGAGCAAAACAAGGCAGGGCCAGGACATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTCTGAGCTAACAGAGCAAAACAAGGCAGGGCCAGGACATTTTCT  450

seq1  GGGCAGGCCAGGACCAAGACCACCATTCAGCCTAGCCCATGACCTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGCCAGGACCAAGACCACCATTCAGCCTAGCCCATGACCTGTGTG  500

seq1  CTACCCATGGCAGAGCCCTGTGCCTGTCCCTGAGTTCACACTCACTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATGGCAGAGCCCTGTGCCTGTCCCTGAGTTCACACTCACTACAG  550

seq1  TGCGTTAGAAACTGGCTAATTCCCCAAGGGGACAATAAAGGCATCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTAGAAACTGGCTAATTCCCCAAGGGGACAATAAAGGCATCCTTTT  600

seq1  AATTTCTATCTGATACCCAGGGACTGTTGCATTCTTACTCATGTAGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTATCTGATACCCAGGGACTGTTGCATTCTTACTCATGTAGGTGC  650

seq1  TTCTCTGCTGCCGTCCTTGTCTATTATAAACAAATCATTCCCATGATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTGCCGTCCTTGTCTATTATAAACAAATCATTCCCATGATTCC  700

seq1  TTGTGGTTTGACAGGGTGCTTTGATTAACCATGAATTTATAAAGCACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTTGACAGGGTGCTTTGATTAACCATGAATTTATAAAGCACTAA  750

seq1  CTTAATCAGTTTAACACTGGGACCCCGGAGGTTCAGGAAACTCCGGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAGTTTAACACTGGGACCCCGGAGGTTCAGGAAACTCCGGGTCC  800

seq1  ATATATTTGATGTGGAGCCTTTTATTAATTGTGTAGGTCACTTACAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTGATGTGGAGCCTTTTATTAATTGTGTAGGTCACTTACAGTGC  850

seq1  TTTGCCATTATCAAGAGGCAGGCTCTTCTGTCTGATGTCCAGCACTGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATTATCAAGAGGCAGGCTCTTCTGTCTGATGTCCAGCACTGTGC  900

seq1  CTCATTGGCCTGGAACAACAGGCTTTCTTTCACCATCTTAAACACATATT  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCATTGGCCTGGAACAACAGGCTTTCTTTCA-CATCTTAAACACATATT  949

seq1  GCCTGTAAACAGACTGAGGGCAGCCTCTCTCCAGATGACAACAAAACACA  1000
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  GCCTGTAAACAGACTGAGGGCAGCCTCTCT-CAGATGAC-ACAAAACACA  997

seq1  AAGAATGACATCTCAGCGTC-TTTGCCACGTCTTTGTTTGCGGAAGCAGA  1049
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAG-ATGACATCTCAGCGTCTTTTGCCACGTCTTTGTTTGCGGAAGCAGA  1046

seq1  AAGCA-CACTGTGTGCT-CCTCAG-ACCAGGCTGTACTCTGCTGCAATAT  1096
      ||||| ||||||||||| |||||| || ||||||||||||||||||||||
seq2  AAGCACCACTGTGTGCTCCCTCAGAACAAGGCTGTACTCTGCTGCAATAT  1096

seq1  CCCCAG-AGCTTGGGCCCCCTTGAGTCTGAGGGAAACAAGAGCTCTTC-A  1144
      |||||| |||||||| |||||||||||||||| | | |||  || | | |
seq2  CCCCAGAAGCTTGGG-CCCCTTGAGTCTGAGGAACAGAAGTCCTTTCCAA  1145

seq1  CACATCTGGTGC--TTGGGTGAT-CTGCCAGCAGAT-GGCTCATGCTCCA  1190
      ||||||||||||  | ||||||| ||||||||| || |||| ||||||||
seq2  CACATCTGGTGCCTTGGGGTGATCCTGCCAGCAAATGGGCTTATGCTCCA  1195

seq1  GTG-CTCAGAG-CCATAAATGAAAGGCTCTCCATCTCC  1226
       || ||| ||| || |||||||||||||||||| ||||
seq2  ATGTCTC-GAGCCCTTAAATGAAAGGCTCTCCA-CTCC  1231