BAC Information

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BAC

Clone NameB6Ng01-104M14
Chromosome4 (Build37)
Map Location 114,196,620 - 114,385,152
singlet/doubletdoublet
Overlap geneLOC666048
Upstream geneLOC242627, LOC100040625, A630098G03Rik
Downstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104M14.bB6Ng01-104M14.g
ACCDH912982DH912983
length8081,098
definitionDH912982|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M14, 5' end.DH912983|Mus musculus domesticus DNA, BAC clone: B6Ng01-104M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,196,620 - 114,197,423)(114,384,049 - 114,385,152)
sequence
gaattcagcccaggctctgttcttgaaaaatgagaggctgggtgtggaca
gtgtggagccagggcgtggggggtgggctgcactgggcctagaaccaagc
tccagggctcagcttccccaggtggaaagagacagtctgcccagtccaaa
cttactttgcatcccagaactcaattccttgccaatatcttctgtatttc
cttactaacattcctcaagtacctactgtgtactgagagtcgtgcccata
gtgggtgtatgaagaccacagcaggatacagagggtgaaggaggatccct
gctggaaactgactagagccctacccagctgtctacccacccagcactgg
aatgccacagccttgtccatagtcaaagaaacactgggtcatctcttggc
tgtgtgcccaggctgaacaatctggtgggcatcagactgggtgcagccac
acacgtggacaggagcttgtttaccttggagggaaaatgacatcttccca
catgccacttcatggtagcatagtatcaaaaaacaccagaagtagcctgg
gccagtgtccatgtggaggtgtcttcgacccctcctgctgctgtcacaga
ttactatagagtgggtggcctcaacaactaacatttatttctcccagttc
tgaaagcgtgataggatccaatgagaatcagcttttctgggttgcaaatg
gccatcttctctccttctctccatgacgacctcacatgggaagagagaaa
cccgagatccccgatgtttccatttctaatagcatcccactggaggttag
agtttggg
gaattcccactctggtagtggatagggagaagctgccacatcacagacag
ggccagtcccacacttccgattgtccccacgacttcagctctctgaggtt
ggccccatccatcaacagtgctgcctgtccttggcacttcgacaggcttt
ggccaccagggtctgctgcttggtgaaagcccttattaaaattaatctca
tttttacgacggccccatctgtcttctgtccagtgggaactcggggtcac
tgtatttttgtttactgtcaggctacttcctatgaccataaattgctttc
cttccctgccgagctggagccctagagaacagcccaattttgctttttgt
tttcttttaagagtcagccctgttctaaatctccttggggcctctctgtt
gggctctgcatctgctccccattgcaggagtagtacatcttagtggcagc
caacactccatccctgatttctttttccctttgcctaatgtctgattctt
ctgcaggcccaagggatgggtgctgagcatctgtcaaggggcagaaactt
gttctggtagcacagttcctaaggagagactatgaagacacaggggtgct
gttgtcattcctcaggctgctctctctccaataaccttcttccaggaaac
tcctcctcacccttcagtgctcagtctcagggtgatggggaaaatggctc
agtaggtaaagtgttcactgtacaagcaagaggacatgagctcagagtcc
gaggatgggagtatacagctaggcacagtggtgtgtacctgtttgttatc
ccacctgctgggaaggcagacacggaaggattcgtggggcttacttgcca
gccttgataagttatagtgagagactttatttaaggtgaagagcaattga
gcagatacttgtgctaatctctgtcctccacatgccacatgcacacacca
catatgcatgtgaacctgtacacacccacgcacacccataccctccactg
tgcctgctgtacaagcctgtcccaatccttctctaagactgaatgctcgt
aaccatttctaatgggggaatcttgcagttttggattgccatctatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_114196620_114197423
seq2: B6Ng01-104M14.b_33_840

seq1  GAATTCAGCCCAGGCTCTGTTCTTGAAAAATGAGAGGCTGGGTGTGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCAGGCTCTGTTCTTGAAAAATGAGAGGCTGGGTGTGGACA  50

seq1  GTGTGGAGCCAGGGCGTGGGGGGTGGGCTGCACTGGGCCTAGAACCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGCCAGGGCGTGGGGGGTGGGCTGCACTGGGCCTAGAACCAAGC  100

seq1  TCCAGGGCTCAGCTTCCCCAGGTGGAAAGAGACAGTCTGCCCAGTCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCTCAGCTTCCCCAGGTGGAAAGAGACAGTCTGCCCAGTCCAAA  150

seq1  CTTACTTTGCATCCCAGAACTCAATTCCTTGCCAATATCTTCTGTATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTGCATCCCAGAACTCAATTCCTTGCCAATATCTTCTGTATTTC  200

seq1  CTTACTAACATTCCTCAAGTACCTACTGTGTACTGAGAGTCGTGCCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAACATTCCTCAAGTACCTACTGTGTACTGAGAGTCGTGCCCATA  250

seq1  GTGGGTGTATGAAGACCACAGCAGGATACAGAGGGTGAAGGAGGATCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTATGAAGACCACAGCAGGATACAGAGGGTGAAGGAGGATCCCT  300

seq1  GCTGGAAACTGACTAGAGCCCTACCCAGCTGTCTACCCACCCAGCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAACTGACTAGAGCCCTACCCAGCTGTCTACCCACCCAGCACTGG  350

seq1  AATGCCACAGCCTTGTCCATAGTCAAAGAAACACTGGGTCATCTCTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACAGCCTTGTCCATAGTCAAAGAAACACTGGGTCATCTCTTGGC  400

seq1  TGTGTGCCCAGGCTGAACAATCTGGTGGGCATCAGACTGGGTGCAGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCCAGGCTGAACAATCTGGTGGGCATCAGACTGGGTGCAGCCAC  450

seq1  ACACGTGGACAGGAGCTTGTTTACCTTGGAGGGAAAATGACATCTTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGGACAGGAGCTTGTTTACCTTGGAGGGAAAATGACATCTTCCCA  500

seq1  CATGCCACTTCATGGTAGCATAGTATCAAAAAACACCAGAAGTAGCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACTTCATGGTAGCATAGTATCAAAAAACACCAGAAGTAGCCTGG  550

seq1  GCCAGTGTCCATGTGGAGGTGTCTTCGACCCCTCCTGCTGCTGTCACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGTCCATGTGGAGGTGTCTTCGACCCCTCCTGCTGCTGTCACAGA  600

seq1  TTACTATAGAGTGGGTGGCCTCAACAACTAACATTTATTTCTCCCAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATAGAGTGGGTGGCCTCAACAACTAACATTTATTTCTCCCAGTTC  650

seq1  TGAAAGCGTGATAGGATCCAATGAGAATCAGC-TTTCTGGTTTGCAAATG  699
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TGAAAGCGTGATAGGATCCAATGAGAATCAGCTTTTCTGGGTTGCAAATG  700

seq1  GCCATCTTCTCTCCTTCTCTCCATGACGACCTCACAT-GGAAGAGAGAAA  748
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCATCTTCTCTCCTTCTCTCCATGACGACCTCACATGGGAAGAGAGAAA  750

seq1  -CCGAGATCCCCGATG-TTCCATTTCTAATAGCATCCCACTGGAGGTTAG  796
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCGAGATCCCCGATGTTTCCATTTCTAATAGCATCCCACTGGAGGTTAG  800

seq1  AGTTTGGG  804
      ||||||||
seq2  AGTTTGGG  808

seq1: chr4_114384049_114385152
seq2: B6Ng01-104M14.g_69_1166 (reverse)

seq1  ACATAGATGGACAATCACAAAACTGCAGAATCCACCCATAAGAAATGGTA  50
      |||||||||| ||||| ||||||||||  || | ||||| ||||||||| 
seq2  ACATAGATGG-CAATC-CAAAACTGCAAGATTCCCCCATTAGAAATGGTT  48

seq1  ACGAGCCATTCAGTCTCAGAGAAGGATTGGGACAGGCTTGTACAGCAGGC  100
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  ACGAG-CATTCAGTCTTAGAGAAGGATTGGGACAGGCTTGTACAGCAGGC  97

seq1  ACAGTGGAGGGTATGTGTGTGCGTGGGTGTGTACAGGTTCACATGCATAT  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAGTGGAGGGTATGGGTGTGCGTGGGTGTGTACAGGTTCACATGCATAT  147

seq1  GTGGGTGTGTGCATGTGGCATGTGGAGGACAGAGATTAGCACCAGGTATC  200
      || |||||||||||||||||||||||||||||||||||||| || |||||
seq2  GT-GGTGTGTGCATGTGGCATGTGGAGGACAGAGATTAGCA-CAAGTATC  195

seq1  TTGCTCAATTGCTCTTCACCTTATATATAGTCTCTCACTATAACTTATCA  250
       |||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  -TGCTCAATTGCTCTTCACCTTAAATAAAGTCTCTCACTATAACTTATCA  244

seq1  AGGCTGGCAAGTAAGCCCCACGAATCCTTCCGTGTCTGCCTTCCCAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCAAGTAAGCCCCACGAATCCTTCCGTGTCTGCCTTCCCAGCAG  294

seq1  GTGGGATAACAAACAGGTACACACCACTGTGCCTAGCTGTATACTCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATAACAAACAGGTACACACCACTGTGCCTAGCTGTATACTCCCAT  344

seq1  CCTCGGACTCTGAGCTCATGTCCTCTTGCTTGTACAGTGAACACTTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGACTCTGAGCTCATGTCCTCTTGCTTGTACAGTGAACACTTTACC  394

seq1  TACTGAGCCATTTTCCCCATCACCCTGAGACTGAGCACTGAAGGGTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCCATTTTCCCCATCACCCTGAGACTGAGCACTGAAGGGTGAGG  444

seq1  AGGAGTTTCCTGGAAGAAGGTTATTGGAGAGAGAGCAGCCTGAGGAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTCCTGGAAGAAGGTTATTGGAGAGAGAGCAGCCTGAGGAATGA  494

seq1  CAACAGCACCCCTGTGTCTTCATAGTCTCTCCTTAGGAACTGTGCTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCACCCCTGTGTCTTCATAGTCTCTCCTTAGGAACTGTGCTACCA  544

seq1  GAACAAGTTTCTGCCCCTTGACAGATGCTCAGCACCCATCCCTTGGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTTTCTGCCCCTTGACAGATGCTCAGCACCCATCCCTTGGGCCT  594

seq1  GCAGAAGAATCAGACATTAGGCAAAGGGAAAAAGAAATCAGGGATGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAATCAGACATTAGGCAAAGGGAAAAAGAAATCAGGGATGGAGT  644

seq1  GTTGGCTGCCACTAAGATGTACTACTCCTGCAATGGGGAGCAGATGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTGCCACTAAGATGTACTACTCCTGCAATGGGGAGCAGATGCAGA  694

seq1  GCCCAACAGAGAGGCCCCAAGGAGATTTAGAACAGGGCTGACTCTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACAGAGAGGCCCCAAGGAGATTTAGAACAGGGCTGACTCTTAAAA  744

seq1  GAAAACAAAAAGCAAAATTGGGCTGTTCTCTAGGGCTCCAGCTCGGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAAAGCAAAATTGGGCTGTTCTCTAGGGCTCCAGCTCGGCAGG  794

seq1  GAAGGAAAGCAATTTATGGTCATAGGAAGTAGCCTGACAGTAAACAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGCAATTTATGGTCATAGGAAGTAGCCTGACAGTAAACAAAAA  844

seq1  TACAGTGACCCCGAGTTCCCACTGGACAGAAGACAGATGGGGCCGTCGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGACCCCGAGTTCCCACTGGACAGAAGACAGATGGGGCCGTCGTA  894

seq1  AAAATGAGATTAATTTTAATAAGGGCTTTCACCAAGCAGCAGACCCTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGATTAATTTTAATAAGGGCTTTCACCAAGCAGCAGACCCTGGT  944

seq1  GGCCAAAGCCTGTCGAAGTGCCAAGGACAGGCAGCACTGTTGATGGATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAGCCTGTCGAAGTGCCAAGGACAGGCAGCACTGTTGATGGATGG  994

seq1  GGCCAACCTCAGAGAGCTGAAGTCGTGGGGACAATCGGAAGTGTGGGACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACCTCAGAGAGCTGAAGTCGTGGGGACAATCGGAAGTGTGGGACT  1044

seq1  GGCCCTGTCTGTGATGTGGCAGCTTCTCCCTATCCACTACCAGAGTGGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGTCTGTGATGTGGCAGCTTCTCCCTATCCACTACCAGAGTGGGA  1094

seq1  ATTC  1104
      ||||
seq2  ATTC  1098