BAC Information

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BAC

Clone NameB6Ng01-106B12
Chromosome4 (Build37)
Map Location 21,423,058 - 21,424,282
singlet/doubletsinglet
Overlap genenone
Upstream geneE130310K16Rik
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106B12.bB6Ng01-106B12.g
ACCDH913931DH913932
length1,2221,188
definitionDH913931|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B12, 5' end.DH913932|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaaatttgattttcatgttaaagtaaatggaaacagttttatg
aaaatcactgtattcgtgaagtaaatgcatttgtgtgtagtgtgtactca
gcagcatgggtcactgttcacgaaaggcaagcatacactgagcaatattt
acagaaattaatgtatatttttaacctacacacagacttttgcacatctc
tatgggtctcagtgcattgggtcacaacaaatgtatttattagtaagtgt
tatacccatatttcttcttgcttccccagagcattgtgttgtataatggc
ttgatctaatcccagcttgtcatttaaacagagatgaatttggcttttga
ctgaaaaaaaaatataaatgtaatagtttctcctaggaaaagtaacctct
gttaaatgctcacagtatactctagcacaaggtttcatagtaagactaca
atgaaaatattaatgagattatcattcaggcacacagagatagtcttatg
atgagcttgaggtttgtcatcaagctcaagaaatgcgtatagctgcacaa
tgccagtataacatttgaagaccaaggattaaattggtcaagttttaaat
tcagatttaaaaaagaattggacatatctggtacttatttagaacgcatg
cattgaaatttcatgagcctcatttgtcctttataccactctttcaataa
ttcatgccattctattttaggttaatattagatttaataaggatagagta
cttattttgggaaatttcaagtggatagagtacttcaaaagaaattaaaa
aaaacccacctgtgtccactcaaatttgatatctgttacctttttcaggc
cctttgaacatgctagcaactttccattacttaaatacacatctagccca
tgactgttaagattgtgctgttcccatcattttcttctttgccttttctc
tttccctgtcatcgctttccttctttccctgcattatccccttattccag
tctttttctgtgctttccttttatgcaaaatcatgctcacattttgctga
accatttaaaattagctgctgaaatgaaacttgtacatggtccaataagg
acatttttaaatgactgctacacatgaccattactatagatgaaccaata
attacacaaaggtcacctcttgatattaaatatctgccagtggctccaaa
atccctctagcattttcctttt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgtggatgtggagaaagaggaacactcctccattgttggt
gggagtgcaggcttgtacaaccactctggaaatcagtctggccgttcctc
agaaaactggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgccccaactggtaagaaggacacatgctccacta
tgttcatagaagccttatttataatagccagaagctgtaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatccacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtggatattagtccaaaac
ctaggatatccaagatataagatacaatttcctaaacacaggaaactcaa
gaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggga
acaaaacacccttagaaggaggtacaagacaacgtttggagctgagataa
aaagatggaccatgtagagactgccatatccggggatccatcccaaatca
gcttccaatgcttacagcattgcatacactagcaagattatgctgaaagg
accctgatatagctgtctttttgtcagagtatgcctgggcctagcaaaac
atagagtggatgctcacagtcggcttattggatggatcacatggctccta
tgaaaggagctagaagaaagtacccaagaagctaaaggatctgcaaccct
tatagtggaacaacatatgaactaaccagtacccgggaggtctgacttct
agctgcatatgtatcaaaagaatggcttaggcggcatcacttggaaagag
aggtccattggacacgcactttataatggctcagtacaggggacgctcag
ggccaaaaagggaatgtggtgtggttgagatgaagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_21423058_21424282
seq2: B6Ng01-106B12.b_46_1267 (reverse)

seq1  AAAAAGAAAATAGCTAGAAGGTATTTTGGAGCCAACTGCAGATATTTAAA  50
      |||| |||||| ||||| ||| ||||||||||||   |||||||||| ||
seq2  AAAAGGAAAAT-GCTAG-AGGGATTTTGGAGCCACTGGCAGATATTT-AA  47

seq1  TATCAAAGAGGTGA-CTTTGTGTAATTATTGG-TCATCTATTAAGT-ATG  97
      |||| ||||||||| ||||||||||||||||| ||||||||  ||| |||
seq2  TATC-AAGAGGTGACCTTTGTGTAATTATTGGTTCATCTAT--AGTAATG  94

seq1  GTCATTGTGTAGCAGTCATTAAAAAATGTCCTTATTGGACAATGTACAAG  147
      |||| ||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GTCA-TGTGTAGCAGTCATTTAAAAATGTCCTTATTGGACCATGTACAAG  143

seq1  TTTCATGTCAGCAGCTAATTTTTAAATGGTTCAGCAAAATGTGAGCATGA  197
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTCATTTCAGCAGCTAA-TTTTAAATGGTTCAGCAAAATGTGAGCATGA  192

seq1  TTTTTGCATAAAAGGAAAGCACAGAAAAAGACTGGAATAAGGGGATAATG  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTGCATAAAAGGAAAGCACAGAAAAAGACTGGAATAAGGGGATAATG  241

seq1  CAGGGAAAGAAGGAAAGCGATGACAGGGAAAGAG-AAAGGCAAAGAAG-A  295
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  CAGGGAAAGAAGGAAAGCGATGACAGGGAAAGAGAAAAGGCAAAGAAGAA  291

seq1  AATGATGGGAACAGCACAATCTTAACAGTCATGGGCTAGATGTGTATTTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGGAACAGCACAATCTTAACAGTCATGGGCTAGATGTGTATTTA  341

seq1  AGTAATGGAAAGTTGCTAGCATGTTC-AAGGGCCTGAAAAAGGTAACAGA  394
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTAATGGAAAGTTGCTAGCATGTTCAAAGGGCCTGAAAAAGGTAACAGA  391

seq1  TATCAAATTTGAGTGGACACAGGTGGGTTTTTTTTAATTTCTTTTGAAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATTTGAGTGGACACAGGTGGGTTTTTTTTAATTTCTTTTGAAGT  441

seq1  ACTCTATCCACTTGAAATTTCCCAAAATAAGTACTCTATCCTTATTAAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATCCACTTGAAATTTCCCAAAATAAGTACTCTATCCTTATTAAAT  491

seq1  CTAATATTAACCTAAAATAGAATGGCATGAATTATTGAAAGAGTGGTATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTAACCTAAAATAGAATGGCATGAATTATTGAAAGAGTGGTATA  541

seq1  AAGGACAAATGAGGCTCATGAAATTTCAATGCATGCGTTCTAAATAAGTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAATGAGGCTCATGAAATTTCAATGCATGCGTTCTAAATAAGTA  591

seq1  CCAGATATGTCCAATTCTTTTTTAAATCTGAATTTAAAACTTGACCAATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATATGTCCAATTCTTTTTTAAATCTGAATTTAAAACTTGACCAATT  641

seq1  TAATCCTTGGTCTTCAAATGTTATACTGGCATTGTGCAGCTATACGCATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTGGTCTTCAAATGTTATACTGGCATTGTGCAGCTATACGCATT  691

seq1  TCTTGAGCTTGATGACAAACCTCAAGCTCATCATAAGACTATCTCTGTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGCTTGATGACAAACCTCAAGCTCATCATAAGACTATCTCTGTGT  741

seq1  GCCTGAATGATAATCTCATTAATATTTTCATTGTAGTCTTACTATGAAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAATGATAATCTCATTAATATTTTCATTGTAGTCTTACTATGAAAC  791

seq1  CTTGTGCTAGAGTATACTGTGAGCATTTAACAGAGGTTACTTTTCCTAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTAGAGTATACTGTGAGCATTTAACAGAGGTTACTTTTCCTAGG  841

seq1  AGAAACTATTACATTTATATTTTTTTTTCAGTCAAAAGCCAAATTCATCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTATTACATTTATATTTTTTTTTCAGTCAAAAGCCAAATTCATCT  891

seq1  CTGTTTAAATGACAAGCTGGGATTAGATCAAGCCATTATACAACACAATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAATGACAAGCTGGGATTAGATCAAGCCATTATACAACACAATG  941

seq1  CTCTGGGGAAGCAAGAAGAAATATGGGTATAACACTTACTAATAAATACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGAAGCAAGAAGAAATATGGGTATAACACTTACTAATAAATACA  991

seq1  TTTGTTGTGACCCAATGCACTGAGACCCATAGAGATGTGCAAAAGTCTGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTGACCCAATGCACTGAGACCCATAGAGATGTGCAAAAGTCTGT  1041

seq1  GTGTAGGTTAAAAATATACATTAATTTCTGTAAATATTGCTCAGTGTATG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGTTAAAAATATACATTAATTTCTGTAAATATTGCTCAGTGTATG  1091

seq1  CTTGCCTTTCGTGAACAGTGACCCATGCTGCTGAGTACACACTACACACA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTTCGTGAACAGTGACCCATGCTGCTGAGTACACACTACACACA  1141

seq1  AATGCATTTACTTCACGAATACAGTGATTTTCATAAAACTGTTTCCATTT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTTACTTCACGAATACAGTGATTTTCATAAAACTGTTTCCATTT  1191

seq1  ACTTTAACATGAAAATCAAATTTCTGAATTC  1225
      |||||||||||||||||||||||||||||||
seq2  ACTTTAACATGAAAATCAAATTTCTGAATTC  1222