BAC Information

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BAC

Clone NameB6Ng01-106C20
Chromosome4 (Build37)
Map Location 116,420,591 - 116,561,065
singlet/doubletdoublet
Overlap geneTesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5
Upstream gene4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik
Downstream geneUrod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106C20.bB6Ng01-106C20.g
ACCDH913992DH913993
length7741,098
definitionDH913992|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C20, 5' end.DH913993|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,420,591 - 116,421,364)(116,559,949 - 116,561,065)
sequence
gaattctaattttttcccattatatttttctaaactggcaacacaaatac
caccttctaaagaacaatacacttacaagctaaaagaacccagtgtttgc
catctgtttgccactgaaatattgatttattcatgtttctggttatgcat
ttattatttaacacacatacagcttgtcatgcaagctctgcctgaggcat
tcccaacagttatggtttaaggtaagcaggggagcagcaaacacatatta
ttctgtgatgtttattgttgtgattgggaagatggaggtcttatttgtgc
ttataggtatatgcaaccatgccagttttatgcgtgcttaaatgccttct
accagtggaaatgcatttttaaaaagatgtatttattatatataagtaca
tggttgctgtcctcagacacaccagaagagggcatcagatctcaccacaa
atggttgtgagccaccatgtggctgctgggacccaaactcacgacctctg
gaagagcagccagtgctctcaaccactgagccatctctccagccccagag
gttaagtttttgcctttttttttttttttttttttgacagggattctctg
tgtagccctggctgtcctagaactcactttgtagaccaggctggccttga
actcagaaatccacctgcctctgcctcccaagtgctgggattaaaggtat
gtgccaccaccacctggcctcaaatattcttaagattgaacattttgtta
aacatgcacagtggggaggggagg
gaattccataaaaggctaatcaagcttatgacagtaaacaattttcttaa
tctttattgcaacattagctgtaattgtaaatttttattatttattttta
tgtgcattggtatttgcctgtatgtatgtttatgagggtatcagatgctc
tgggattggaattacagacaggtgtgagttgcacatgtggttgccgggaa
ttaaacctgggtcctctggaagagcagacagtgctcttaactgctgagcc
atctctccagccccttaaaattcttatagttggaaatacattaaagtaga
gcaatatattcagctgttttcattttgcacggtaatcacttcctactttg
tctccataattaaatctactttaataaaacattgcactaaacactatttt
acatttgcatcctgtatattccttatgacatagaaattaacttctatact
gaatattaaaaatattatgtttcataaataaatgaatgaacaagcatgaa
gaaaactaacttggcatcacactaataagagggtcttttgacaatggcta
cattggcaaaaattgatacactttgaaatgactttcaaaagacagaagag
acatgtgctaagaaaatcactcattttgcaatctattaacaagtaaaagt
tgatacaagccaaaacattcatattgtctaaagtgcaaaatgtcaacagt
acacttgaaacagggacattaatgaggtactgtgtgtcaagagcagtgtt
tgtcacagaacccctgggagggcagagatggagcacaggggttagggcat
ctgcctccacgcctgaggtcctaggtttttttttatcccagtaccataaa
ctaattctctttttggatagttgtgggtttttattctgaaatttgattct
cacagattctactcattaacttgatatgtattctgagcatgaccatatta
aacacacacaaaaaccctcatgtgatttaatataaacagattagagccca
ttttttctttttcttttcttacccatatagtcttttactacatcgctaac
gatcacaatagtcttttaatccagaacctgttcctgtagctaacaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_116420591_116421364
seq2: B6Ng01-106C20.b_44_817

seq1  GAATTCTAATTTTTTCCCATTATATTTTTCTAAACTGGCAACACAAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTTTTTCCCATTATATTTTTCTAAACTGGCAACACAAATAC  50

seq1  CACCTTCTAAAGAACAATACACTTACAAGCTAAAAGAACCCAGTGTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTAAAGAACAATACACTTACAAGCTAAAAGAACCCAGTGTTTGC  100

seq1  CATCTGTTTGCCACTGAAATATTGATTTATTCATGTTTCTGGTTATGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTTGCCACTGAAATATTGATTTATTCATGTTTCTGGTTATGCAT  150

seq1  TTATTATTTAACACACATACAGCTTGTCATGCAAGCTCTGCCTGAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTAACACACATACAGCTTGTCATGCAAGCTCTGCCTGAGGCAT  200

seq1  TCCCAACAGTTATGGTTTAAGGTAAGCAGGGGAGCAGCAAACACATATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACAGTTATGGTTTAAGGTAAGCAGGGGAGCAGCAAACACATATTA  250

seq1  TTCTGTGATGTTTATTGTTGTGATTGGGAAGATGGAGGTCTTATTTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGATGTTTATTGTTGTGATTGGGAAGATGGAGGTCTTATTTGTGC  300

seq1  TTATAGGTATATGCAACCATGCCAGTTTTATGCGTGCTTAAATGCCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTATATGCAACCATGCCAGTTTTATGCGTGCTTAAATGCCTTCT  350

seq1  ACCAGTGGAAATGCATTTTTAAAAAGATGTATTTATTATATATAAGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGAAATGCATTTTTAAAAAGATGTATTTATTATATATAAGTACA  400

seq1  TGGTTGCTGTCCTCAGACACACCAGAAGAGGGCATCAGATCTCACCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGTCCTCAGACACACCAGAAGAGGGCATCAGATCTCACCACAA  450

seq1  ATGGTTGTGAGCCACCATGTGGCTGCTGGGACCCAAACTCACGACCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAGCCACCATGTGGCTGCTGGGACCCAAACTCACGACCTCTG  500

seq1  GAAGAGCAGCCAGTGCTCTCAACCACTGAGCCATCTCTCCAGCCCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGCCAGTGCTCTCAACCACTGAGCCATCTCTCCAGCCCCAGAG  550

seq1  GTTAAGTTTTTGCCTTTTTTTTTTTTTTTTTTTTTGACAGGGATTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTTTTTGCCTTTTTTTTTTTTTTTTTTTTTGACAGGGATTCTCTG  600

seq1  TGTAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCTGGCCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCTGGCCTTGA  650

seq1  ACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTAT  700

seq1  GTGCCACCACCACCTGGCCTCAAATATTCTTAAGATTGAACATTTTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCACCACCTGGCCTCAAATATTCTTAAGATTGAACATTTTGTTA  750

seq1  AACATGCACAGTGGGGAGGGGAGG  774
      ||||||||||||||||||||||||
seq2  AACATGCACAGTGGGGAGGGGAGG  774

seq1: chr4_116559949_116561065
seq2: B6Ng01-106C20.g_68_1165 (reverse)

seq1  GGTTGTTTAGCTACAGGAACAAGATTCTGGATTAAAAGACTAATTTGTGA  50
      ||||| |||||||||||||| || ||||||||||||||||||  ||||||
seq2  GGTTG-TTAGCTACAGGAAC-AGGTTCTGGATTAAAAGACTA--TTGTGA  46

seq1  TCGTTTAGCGATGTAGTAAAAGACCTATATTGGGTTAAGGAAAAGAAAAA  100
      ||| ||||||||||||||||||| ||||| |||||  | |||||||||||
seq2  TCG-TTAGCGATGTAGTAAAAGA-CTATA-TGGGT--AAGAAAAGAAAAA  91

seq1  GAAAAAATGGGCTCTAATCTTGGTTTATATTTAAATCACATGAGGGTTTT  150
      ||||||||||||||||||||  ||||||| ||||||||||||||||||||
seq2  GAAAAAATGGGCTCTAATCT--GTTTATA-TTAAATCACATGAGGGTTTT  138

seq1  TGTTGTTGTTGTTTAATATGGTCATGCTCAGAATACATATCAAGTTAATT  200
      || |||   ||||||||||||||||||||||||||||||||||||||| |
seq2  TG-TGT--GTGTTTAATATGGTCATGCTCAGAATACATATCAAGTTAA-T  184

seq1  GAGTTAGAATCTGTTGAGAATCAAATTTCAGAATAAAAAACCCACAACTA  250
      ||| ||||||||| |||||||||||||||||||| |||||||||||||||
seq2  GAG-TAGAATCTG-TGAGAATCAAATTTCAGAAT-AAAAACCCACAACTA  231

seq1  TCCAAAAAGAGAATTAGTTTATGGTACTGGGATAAAAAAAAACCTAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAGAGAATTAGTTTATGGTACTGGGATAAAAAAAAACCTAGGAC  281

seq1  CTCAGGCGTGGAGGCAGATGCCCTAACCCCTGTGCTCCATCTCTGCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCGTGGAGGCAGATGCCCTAACCCCTGTGCTCCATCTCTGCCCTC  331

seq1  CCAGGGGTTCTGTGACAAACACTGCTCTTGACACACAGTACCTCATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGTTCTGTGACAAACACTGCTCTTGACACACAGTACCTCATTAAT  381

seq1  GTCCCTGTTTCAAGTGTACTGTTGACATTTTGCACTTTAGACAATATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTTTCAAGTGTACTGTTGACATTTTGCACTTTAGACAATATGAA  431

seq1  TGTTTTGGCTTGTATCAACTTTTACTTGTTAATAGATTGCAAAATGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGCTTGTATCAACTTTTACTTGTTAATAGATTGCAAAATGAGTG  481

seq1  ATTTTCTTAGCACATGTCTCTTCTGTCTTTTGAAAGTCATTTCAAAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTAGCACATGTCTCTTCTGTCTTTTGAAAGTCATTTCAAAGTGT  531

seq1  ATCAATTTTTGCCAATGTAGCCATTGTCAAAAGACCCTCTTATTAGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTTTGCCAATGTAGCCATTGTCAAAAGACCCTCTTATTAGTGTG  581

seq1  ATGCCAAGTTAGTTTTCTTCATGCTTGTTCATTCATTTATTTATGAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGTTAGTTTTCTTCATGCTTGTTCATTCATTTATTTATGAAACA  631

seq1  TAATATTTTTAATATTCAGTATAGAAGTTAATTTCTATGTCATAAGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTTAATATTCAGTATAGAAGTTAATTTCTATGTCATAAGGAAT  681

seq1  ATACAGGATGCAAATGTAAAATAGTGTTTAGTGCAATGTTTTATTAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGATGCAAATGTAAAATAGTGTTTAGTGCAATGTTTTATTAAAGT  731

seq1  AGATTTAATTATGGAGACAAAGTAGGAAGTGATTACCGTGCAAAATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAATTATGGAGACAAAGTAGGAAGTGATTACCGTGCAAAATGAAA  781

seq1  ACAGCTGAATATATTGCTCTACTTTAATGTATTTCCAACTATAAGAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGAATATATTGCTCTACTTTAATGTATTTCCAACTATAAGAATTT  831

seq1  TAAGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGTCTGCTCTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGTCTGCTCTTCC  881

seq1  AGAGGACCCAGGTTTAATTCCCGGCAACCACATGTGCAACTCACACCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCCAGGTTTAATTCCCGGCAACCACATGTGCAACTCACACCTGT  931

seq1  CTGTAATTCCAATCCCAGAGCATCTGATACCCTCATAAACATACATACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTCCAATCCCAGAGCATCTGATACCCTCATAAACATACATACAG  981

seq1  GCAAATACCAATGCACATAAAAATAAATAATAAAAATTTACAATTACAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATACCAATGCACATAAAAATAAATAATAAAAATTTACAATTACAGC  1031

seq1  TAATGTTGCAATAAAGATTAAGAAAATTGTTTACTGTCATAAGCTTGATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTGCAATAAAGATTAAGAAAATTGTTTACTGTCATAAGCTTGATT  1081

seq1  AGCCTTTTATGGAATTC  1117
      |||||||||||||||||
seq2  AGCCTTTTATGGAATTC  1098