BAC Information

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BAC

Clone NameB6Ng01-106K21
Chromosome2 (Build37)4 (Build37)
Map Location 21,450,571 - 21,451,46119,110,010 - 19,110,691
singlet/doubletsingletsinglet
Overlap geneGpr158
Upstream geneEtl4, Arhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1
Downstream geneLOC637235, Myo3a, LOC100041703, Myo3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106K21.bB6Ng01-106K21.g
ACCDH914347DH914348
length891960
definitionDH914347|Mus musculus domesticus DNA, BAC clone: B6Ng01-106K21, 5' end.DH914348|Mus musculus domesticus DNA, BAC clone: B6Ng01-106K21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,450,571 - 21,451,461)(19,110,010 - 19,110,691)
sequence
gaattctttatcagtttttatctttgaaggatttgttagttctaatggtc
tttttgtgagtgcattaggttttctcgtatataaaacatacagaagacat
gtatttgagagtcgaacctatccaattatttgatgccttctctcacatcc
tgttctctatttcatgcttgctttttgcccctgatgtctgcttcctcttt
cttaccttttctctttcctttaccttcacctcttcttatgaattttaaaa
agaaaaacaatgaataatgttttggtagggctcatatgtatgtgaatgtc
tggcagtcccatcttcaaaaaggggctctaaagtttctccctctaagaaa
tggttggttattcccatgaggttcataccattattgcctcagtgagtgtg
tcttgctgggctatcattgtctctcacggcgttcacacctgggtatgctt
gatgatgacctcgatagtgtgtgtcatatcctctaggactaaaatgctag
ccagtattgatggagcttcttgttcagtccagcttgacttccccatgttc
tgttgctcaagtatgtggtatcttcagtaataggttcttactgtcaattt
ccagcattgacattagcctataatgttttaggatctatgggactctgctg
cccaacaactccaaaacacataacagcagccacaaggcctatgcaagccc
aagacagcctaattctcagcatgaaatctcacccctaaccttggaacttt
tggcaattattagcagctagtatatggagagtcacttttctctgagaata
tagcccctaggcagcacaagttggttctgatgggttaaaaacaaaaccaa
cattcaaatttgggtagatagggaaggggatggtggatctg
gaattcctgatctttccatgacttttatcatgaagggatgttggatttta
tcaaattctttcttagcatctaaggagatgaccatgtgatttttgtcttt
gagtttgtttacatagtggattacgttgatggatttccatatattaaacc
atccctgcatccatgggatgaagcctacttggtcatgatgaataattgtt
ttgatgtgttcttcgattaggtttgcagggattttattgtgtatttttgc
atcaatattcataagggaaattggtctgaagttctttttctttgttgtat
ctttgtgtggtttaggtatcagagtaattgtggcttcatagaatgaattg
ggtagagtaccttctgtttctattttgtggaattatttgaggagagttgg
aattagatcttatttgaagtctgatagaactctgcaccaaatccaaatcc
atctgttctgttcctgggctttttttttggttgggagactattgatgact
gctttatttctttagaggaaatcggactgttaagatcgttaatctgatcc
tgatttaactttggtaactggtatctgtctaggaagttgttcatttcatc
caggtttcccaggtttgttgagtatagccttttgtagtaggatctgatga
tgttttgaatttcctcaagttctgttgttatgtctcccttttcatttctg
gttcttatttctaaaaggtaggaatatacaactgacttgaaaactttgta
taaaatttactagtaattttcacattttttctctcatttggggaaatgat
aagatcacccttctatgtcctcatacattaggaatgattgtgtgactttt
ggtcagactctaggagccagtgtatgctttgtcatcttttctttccatca
gtctctatgctagtgatgaatgtgaccaaaagcatatgggtcagagtcag
atgacccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_21450571_21451461
seq2: B6Ng01-106K21.b_48_938

seq1  GAATTCTTTATCAGTTTTTATCTTTGAAGGATTTGTTAGTTCTAATGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCAGTTTTTATCTTTGAAGGATTTGTTAGTTCTAATGGTC  50

seq1  TTTTTGTGAGTGCATTAGGTTTTCTCGTATATAAAACATACAGAAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGAGTGCATTAGGTTTTCTCGTATATAAAACATACAGAAGACAT  100

seq1  GTATTTGAGAGTCGAACCTATCCAATTATTTGATGCCTTCTCTCACATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGAGAGTCGAACCTATCCAATTATTTGATGCCTTCTCTCACATCC  150

seq1  TGTTCTCTATTTCATGCTTGCTTTTTGCCCCTGATGTCTGCTTCCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTATTTCATGCTTGCTTTTTGCCCCTGATGTCTGCTTCCTCTTT  200

seq1  CTTACCTTTTCTCTTTCCTTTACCTTCACCTCTTCTTATGAATTTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTTTTCTCTTTCCTTTACCTTCACCTCTTCTTATGAATTTTAAAA  250

seq1  AGAAAAACAATGAATAATGTTTTGGTAGGGCTCATATGTATGTGAATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACAATGAATAATGTTTTGGTAGGGCTCATATGTATGTGAATGTC  300

seq1  TGGCAGTCCCATCTTCAAAAAGGGGCTCTAAAGTTTCTCCCTCTAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTCCCATCTTCAAAAAGGGGCTCTAAAGTTTCTCCCTCTAAGAAA  350

seq1  TGGTTGGTTATTCCCATGAGGTTCATACCATTATTGCCTCAGTGAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTATTCCCATGAGGTTCATACCATTATTGCCTCAGTGAGTGTG  400

seq1  TCTTGCTGGGCTATCATTGTCTCTCACGGCGTTCACACCTGGGTATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGGGCTATCATTGTCTCTCACGGCGTTCACACCTGGGTATGCTT  450

seq1  GATGATGACCTCGATAGTGTGTGTCATATCCTCTAGGACTAAAATGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGACCTCGATAGTGTGTGTCATATCCTCTAGGACTAAAATGCTAG  500

seq1  CCAGTATTGATGGAGCTTCTTGTTCAGTCCAGCTTGACTTCCCCATGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTGATGGAGCTTCTTGTTCAGTCCAGCTTGACTTCCCCATGTTC  550

seq1  TGTTGCTCAAGTATGTGGTATCTTCAGTAATAGGTTCTTACTGTCAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCAAGTATGTGGTATCTTCAGTAATAGGTTCTTACTGTCAATTT  600

seq1  CCAGCATTGACATTAGCCTATAATGTTTTAGGATCTATGGGACTCTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTGACATTAGCCTATAATGTTTTAGGATCTATGGGACTCTGCTG  650

seq1  CCCAACAACTCCAAAACACATAACAGCAGCCACAAGGCCTATGCAAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAACTCCAAAACACATAACAGCAGCCACAAGGCCTATGCAAGCCC  700

seq1  AAGACAGCCTAATTCTCAGCATGAAATCTCACCCCTAACCTTGGAACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCCTAATTCTCAGCATGAAATCTCACCCCTAACCTTGGAACTTT  750

seq1  TGGCAATTATTAGCAGCTAGTATATGGAGAGTCACTTTTCTCTGAGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATTATTAGCAGCTAGTATATGGAGAGTCACTTTTCTCTGAGAATA  800

seq1  TAGCCCCTAGGCAGCACAAGTTGGTTCTGATGGGTTAAAAACAAAACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTAGGCAGCACAAGTTGGTTCTGATGGGTTAAAAACAAAACCAA  850

seq1  CATTCAAATTTGGGTAGATAGGGAAGGGGATGGTGGATCTG  891
      |||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAATTTGGGTAGATAGGGAAGGGGATGGTGGATCTG  891

seq1: chr4_19110010_19110691
seq2: B6Ng01-106K21.g_68_767 (reverse)

seq1  CAGAAATGAAAAAGGAGACATAACAACAGAACCTGAGGAAATCCAAAACA  50
      |||||||||||| ||||||||||||||||||| ||||||||| |||||||
seq2  CAGAAATGAAAAGGGAGACATAACAACAGAACTTGAGGAAATTCAAAACA  50

seq1  TCATCATATTCTATTACAAAAGGCTATCCTCAACAAAACTGGAAAACCTA  100
      |||||| || ||| ||||||||||||| ||||||||| |||| |||||| 
seq2  TCATCAGATCCTACTACAAAAGGCTATACTCAACAAACCTGGGAAACCTG  100

seq1  GATGAAATGAACAACTTCCTGGACAGATACCAGGAACCAAAGTTAAATCA  150
      |||||||||||||||||||| ||||||||||||  |||||||||||||||
seq2  GATGAAATGAACAACTTCCTAGACAGATACCAGTTACCAAAGTTAAATCA  150

seq1  GGATCAGATTAACAATCTTAACAGTCTGATTTCCCCTAAAGAAATAGAAG  200
      ||||||||||||| |||||||||||| ||||||| ||||||||||| |||
seq2  GGATCAGATTAACGATCTTAACAGTCCGATTTCCTCTAAAGAAATA-AAG  199

seq1  CAGTCATTAATAGTCTCCCAACC--AAAAAAAGCCCAGGACCAGA-----  243
      ||||||| |||||||||||||||  ||||||||||||||| ||||     
seq2  CAGTCATCAATAGTCTCCCAACCAAAAAAAAAGCCCAGGAACAGAACAGA  249

seq1  ------TGGGTTTAGTGCAGAGTTCTGTCAGACCTTCAAAGAAGACCTAA  287
            ||| ||| |||||||||||| ||||| ||||||| |||| ||||
seq2  TGGATTTGGATTTGGTGCAGAGTTCTATCAGA-CTTCAAATAAGATCTAA  298

seq1  TTCCAACTGTCCTCAAACTATTCCACAAAATATAAACAGAAGGTAATCTA  337
      |||||||| ||||||||  ||||||||||||| |||||||||||| ||||
seq2  TTCCAACTCTCCTCAAATAATTCCACAAAATAGAAACAGAAGGTACTCTA  348

seq1  CCCAATTCATTCTATGAAGCCACAATTACTCTGATACCTAAACCACACAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTCATTCTATGAAGCCACAATTACTCTGATACCTAAACCACACAA  398

seq1  AGATCGAACAAAGAAAGAGAACTTCAGACCAATTTCCCT------TATCG  431
      ||||  |||||||||| ||||||||||||||||||||||      ||| |
seq2  AGATACAACAAAGAAAAAGAACTTCAGACCAATTTCCCTTATGAATATTG  448

seq1  ATGCAAAACTACTCAATAAAATCCTTGCACACTAAATCCAAGAACACATC  481
      |||||||| ||| ||||||||||| |||| ||  |||| |||||||||||
seq2  ATGCAAAAATACACAATAAAATCCCTGCAAACCTAATCGAAGAACACATC  498

seq1  AAAATGATCATCCATCCTGACCAAGTAGGCTTCATCCCAGGGATGCAGGG  531
      ||||  || || |||| |||||||||||||||||||||| ||||||||||
seq2  AAAACAATTATTCATCATGACCAAGTAGGCTTCATCCCATGGATGCAGGG  548

seq1  ATGCTTTAATATATGGAAATCTATCAACATAAACCACTGTATAAACAAAC  581
      ||| ||||||||||||||||| |||||| ||| ||||| | |||||||||
seq2  ATGGTTTAATATATGGAAATCCATCAACGTAATCCACTATGTAAACAAAC  598

seq1  TCAAA-ACAAAAATCACATGATCATTTCATTAGATGCTGAGAAACCATTT  630
      ||||| |||||||||||||| |||| || ||||||||| |||||  ||||
seq2  TCAAAGACAAAAATCACATGGTCATCTCCTTAGATGCTAAGAAAGAATTT  648

seq1  GACAAAATGCAACACCCCTTCATGATAAAAGTCATGGAAATATCAGGAAT  680
      || ||||| ||||| ||||||||||||||||||||||||| |||||||||
seq2  GATAAAATCCAACATCCCTTCATGATAAAAGTCATGGAAAGATCAGGAAT  698

seq1  TC  682
      ||
seq2  TC  700