BAC Information

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BAC

Clone NameB6Ng01-113J17
Chromosome4 (Build37)
Map Location 142,815,989 - 142,974,118
singlet/doubletdoublet
Overlap geneLOC433776, Pdpn, Lrrc38
Upstream geneEG665983, LOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575
Downstream geneLOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113J17.bB6Ng01-113J17.g
ACCDH919358DH919359
length1,096459
definitionDH919358|Mus musculus domesticus DNA, BAC clone: B6Ng01-113J17, 5' end.DH919359|Mus musculus domesticus DNA, BAC clone: B6Ng01-113J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,973,030 - 142,974,118)(142,815,989 - 142,816,453)
sequence
gaattcactatgtagatttgaacttacaaagatatgcctgcctcccaaat
gctggtattaaaggcatgtaccaccatgcccagttttaaacaatcactat
taagaaatgtttgagtataaatagtcatgttgccatttctaggagttaaa
aaaagatatgactttccagatgtgttcagtgggctccagggaccctggct
tccatctacagcactacaagtaaataacaaacaaaaataatttaaaaggt
aattttttaaattttttaaatatatgcaagtttaaatgtttatatgttta
aacgtttatatgtttaaatatatgcaagtgcatcatgggcatgcagtacc
tactgaggccaggcatgggcgccagattcccccaaaactggagttaaagg
tggttgtgaccaaccaagtagattctgggaactgagttctctgtaagaac
attccaattctggaaaggagttcttaggaggggaaataagggccgtcaaa
agagtcaaatcaccagggcctgtagcagagcagaaccagcttccattcaa
cccacagcaatctctggcgcatgaaacctgctaccagaatctgccggatc
ttcctgctttctcctccccggtactgggatcacagacacacattgaagtt
catgctgggaaccgaatccaggatttagtgcatactagggggtcactctg
ccccagctcaaaaatgtcatcttcaaactgacatttgctcctgcacttta
cagccttgttcaacgaggtaggtacccaggccttagcctggagtcaccta
gtctgctggcatttgtttgccctgagagccaggcattctgatcactgtgt
aggacctatagaatcttccccttgttttaattaattggactgccagtgtc
tcatctaaatcctcttctgtacaagataaaaccaaagtattgtgactccc
aactccacttcttttatattctgtgatgctgaagagcaatctatagcttc
acagtgtctaggcaggagctctgccactgagctacgtggcctcagtcctc
actttttctttgtttcagagaaatgcagccccagcagatgttagga
agactactttccagcagacagagcgaaagagaggaagcagccgccctggg
ccaggaggctcaagcttccagacgtagttaacattaacataggcatgacg
atggacggggtcagtgttcacagtgggcttgtcatcacaagtcacagatc
ctcaactgcttcttataattgactgtgatgaaatattacaattgtcctca
caggaggacaaacaaacattttcgcagcaaagttgtcttttgtgtgagat
ttacaaatagtgcttaaatgtaaaatggattcctgcgtatgctcataaaa
gatttattttagcctttgaaagctttgggggtttttgtttgtttgttttt
gagtgtttgggtttgggcatttgttcaacctggtgatgtccaatgtccct
gggtctgctttatattatatctgtaatatatatatatatatatgtatata
tatgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142973030_142974118
seq2: B6Ng01-113J17.b_46_1141 (reverse)

seq1  TCCTAACATCTGCTGGGGCTGCA--TCTCTGGAACTAAG-AAAAGTGA-G  46
      |||||||||||||||||||||||  |||||| ||| ||| |||||||| |
seq2  TCCTAACATCTGCTGGGGCTGCATTTCTCTGAAACAAAGAAAAAGTGAGG  50

seq1  ACTGAGG-CACGTAGCTCAGTGGCAGAGCTCTTGCCTAGCACCTGTGAGG  95
      ||||||| ||||||||||||||||||||||| |||||||   |||||| |
seq2  ACTGAGGCCACGTAGCTCAGTGGCAGAGCTCCTGCCTAGACACTGTGAAG  100

seq1  CTATAGATTGCTCTTCAGCATCACAGAATATAAAAGAAGTGGAGTTGGGA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGATTGCTCTTCAGCATCACAGAATATAAAAGAAGTGGAGTTGGGA  150

seq1  GTCACAATAC-TTGGTTTTATCTTGTACAG-AGAGGATTTAGATGAGACA  193
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  GTCACAATACTTTGGTTTTATCTTGTACAGAAGAGGATTTAGATGAGACA  200

seq1  CTGGCAGTCCAATTAATTAAAACAAGGGGAAGATTCTATAGGTCCTACAC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGTCCAATTAATTAAAACAAGGGGAAGATTCTATAGGTCCTACAC  250

seq1  AGTGATCAGAATGCCTGGCTCTCAGGGCAAACAAATGCCAGCAGACTAGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCAGAATGCCTGGCTCTCAGGGCAAACAAATGCCAGCAGACTAGG  300

seq1  TGACTCCAGGCTAAGGCCTGGGTACCTACCTCGTTGAACAAGGCTGTAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCAGGCTAAGGCCTGGGTACCTACCTCGTTGAACAAGGCTGTAAA  350

seq1  GTGCAGGAGCAAATGTCAGTTTGAAGATGACATTTTTGAGCTGGGGCAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGAGCAAATGTCAGTTTGAAGATGACATTTTTGAGCTGGGGCAGA  400

seq1  GTGACCCCCTAGTATGCACTAAATCCTGGATTCGGTTCCCAGCATGAACT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCCCTAGTATGCACTAAATCCTGGATTCGGTTCCCAGCATGAACT  450

seq1  TCAATGTGTGTCTGTGATCCCAGTACCGGGGAGGAGAAAGCAGGAAGATC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGTGTCTGTGATCCCAGTACCGGGGAGGAGAAAGCAGGAAGATC  500

seq1  CGGCAGATTCTGGTAGCAGGTTTCATGCGCCAGAGATTGCTGTGGGTTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGATTCTGGTAGCAGGTTTCATGCGCCAGAGATTGCTGTGGGTTGA  550

seq1  ATGGAAGCTGGTTCTGCTCTGCTACAGGCCCTGGTGATTTGACTCTTTTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCTGGTTCTGCTCTGCTACAGGCCCTGGTGATTTGACTCTTTTG  600

seq1  ACGGCCCTTATTTCCCCTCCTAAGAACTCCTTTCCAGAATTGGAATGTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCCCTTATTTCCCCTCCTAAGAACTCCTTTCCAGAATTGGAATGTTC  650

seq1  TTACAGAGAACTCAGTTCCCAGAATCTACTTGGTTGGTCACAACCACCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGAACTCAGTTCCCAGAATCTACTTGGTTGGTCACAACCACCTT  700

seq1  TAACTCCAGTTTTGGGGGAATCTGGCGCCCATGCCTGGCCTCAGTAGGTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGTTTTGGGGGAATCTGGCGCCCATGCCTGGCCTCAGTAGGTA  750

seq1  CTGCATGCCCATGATGCACTTGCATATATTTAAACATATAAACGTTTAAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCCCATGATGCACTTGCATATATTTAAACATATAAACGTTTAAA  800

seq1  CATATAAACATTTAAACTTGCATATATTTAAAAAATTTAAAAAATTACCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAACATTTAAACTTGCATATATTTAAAAAATTTAAAAAATTACCT  850

seq1  TTTAAATTATTTTTGTTTGTTATTTACTTGTAGTGCTGTAGATGGAAGCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTATTTTTGTTTGTTATTTACTTGTAGTGCTGTAGATGGAAGCC  900

seq1  AGGGTCCCTGGAGCCCACTGAACACATCTGGAAAGTCATATCTTTTTTTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCCTGGAGCCCACTGAACACATCTGGAAAGTCATATCTTTTTTTA  950

seq1  ACTCCTAGAAATGGCAACATGACTATTTATACTCAAACATTTCTTAATAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAGAAATGGCAACATGACTATTTATACTCAAACATTTCTTAATAG  1000

seq1  TGATTGTTTAAAACTGGGCATGGTGGTACATGCCTTTAATACCAGCATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTTTAAAACTGGGCATGGTGGTACATGCCTTTAATACCAGCATTT  1050

seq1  GGGAGGCAGGCATATCTTTGTAAGTTCAAATCTACATAGTGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGGCATATCTTTGTAAGTTCAAATCTACATAGTGAATTC  1096

seq1: chr4_142815989_142816453
seq2: B6Ng01-113J17.g_67_531

seq1  GAATTCAGACTACTTTCCAGCAGACAGAGCGAAAGAGAGGAAGCAGCCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTACTTTCCAGCAGACAGAGCGAAAGAGAGGAAGCAGCCGC  50

seq1  CCTGGGCCAGGAGGCTCAAGCTTCCAGACGTAGTTAACATTAACATAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCAGGAGGCTCAAGCTTCCAGACGTAGTTAACATTAACATAGGC  100

seq1  ATGACGATGGACGGGGTCAGTGTTCACAGTGGGCTTGTCATCACAAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGATGGACGGGGTCAGTGTTCACAGTGGGCTTGTCATCACAAGTCA  150

seq1  CAGATCCTCAACTGCTTCTTATAATTGACTGTGATGAAATATTACAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTCAACTGCTTCTTATAATTGACTGTGATGAAATATTACAATTG  200

seq1  TCCTCACAGGAGGACAAACAAACATTTTCGCAGCAAAGTTGTCTTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGGAGGACAAACAAACATTTTCGCAGCAAAGTTGTCTTTTGTG  250

seq1  TGAGATTTACAAATAGTGCTTAAATGTAAAATGGATTCCTGCGTATGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTACAAATAGTGCTTAAATGTAAAATGGATTCCTGCGTATGCTC  300

seq1  ATAAAAGATTTATTTTAGCCTTTGAAAGCTTTGGGGGTTTTTGTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGATTTATTTTAGCCTTTGAAAGCTTTGGGGGTTTTTGTTTGTTT  350

seq1  GTTTTTGAGTGTTTGGGTTTGGGCATTTGTTCAACCTGGTGATGTCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAGTGTTTGGGTTTGGGCATTTGTTCAACCTGGTGATGTCCAAT  400

seq1  GTCCCTGGGTCTGCTTTATATTATATCTGTAATATATATATATATATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGGTCTGCTTTATATTATATCTGTAATATATATATATATATATG  450

seq1  TATATATATGTGTGT  465
      |||||||||||||||
seq2  TATATATATGTGTGT  465