BAC Information

Click to search

BAC

Clone NameB6Ng01-114C05
Chromosome4 (Build37)
Map Location 54,666,076 - 54,812,237
singlet/doubletdoublet
Overlap geneLOC100041303
Upstream geneLOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901
Downstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114C05.bB6Ng01-114C05.g
ACCDH919739DH919740
length1,0271,195
definitionDH919739|Mus musculus domesticus DNA, BAC clone: B6Ng01-114C05, 5' end.DH919740|Mus musculus domesticus DNA, BAC clone: B6Ng01-114C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,811,206 - 54,812,237)(54,666,076 - 54,667,303)
sequence
gaattctctaggtggcaaaatggtcacattgtggctaacacagcaagtcc
tgaccaggtccggaggaaggagggtaccagtgtatttcccctctcccccc
acttctctttccttccctttgcaaatggaaacctttcccacaatcttctg
gcaaaatcctctctcaaatctcactggcttgatttatgcccacataccct
tggaaccaatcttggtcaaagggaatgggttcttccctcaccctggggct
agggctgggggtgtgcccactcatctggtagaacagcttcctccaggatg
ctgctaccgtgaacttctgcctcagaagtcctgccaaaggaaatacgttc
tcttttgcccgagtttctattctacaggaggagaaggattggatttcaaa
agaattaatgaattttagagtgaagacttcttttctaccatggatgctcc
catctgtgggcccatttctgtgggttggggataggttatggtgcccaggg
agcagtccgggcatcctgcagatcgactgcagagcctgtaagaacgattg
tatgtcattactgtattttctctccaccttgacaaagagcagtctaggca
gggtttgccaatcctatcagtgtactccagcttctaggccaccagtattt
gtggttatgtggccctggagtcacatttcctgtcaccattaaccgaagga
gccgcctgagcctagtataatagaatattctaatagagaatgaaaggtct
tgcagccttgcaggtcacagaagaaggacctacactcagcctattatctt
ttgccccagagtgttattttttttttagacaaagctctaagcttgtcgtt
gtatccacagggaaagaaccgggctcaaccagtttgtttccaatgctttg
tttcccctttgctatctttaaactttcaaaatatgctagacttcatgaga
taaatgtttattgaaaggagaatcagtttgttttttactatatttatttt
atctatgtacacagaccctagtcagac
gaattctcagcagctggtgtctgacagattatctcattccagacaggcaa
acggtccatggtaaggaaaggctggagcctgaagaggcaatttggcacac
attggggtttcacctctcgatgatggaggtccaagtggcccaccacgtct
gggcctgtgtccctcagagcttctctctggctcatcgcctcccagagctc
ctgacagccatagaaaaggggattattctgtgagctaagccagctcatct
ctcacccctcctctagggcactaatattctaaccagaagaagcaattatg
gtccccactccgcccccaagcccctgcatgcgctctgctctttcaggcgt
ggtacaagctatttcctcaccccccccatgtcttcacctccacagcaaac
tcctgtgttccaaacccatctagagtccttctgcagaagaaagctagtcc
ttgagattcagaagctactaaaacacttagcctgttattttattactcag
tttcacaatcacttgttttctatgaacttctgcactgcagctaggagggt
gttttctaatgaagccaatgtgtagggtactgttataaacacttttcttc
tatggacttgcttggtcctcttaaccctaacagggagagagaaactgggt
cttgatgttgcatgctgggccccagtaaaatttccctgaagtggtggggc
tggaaaagccctgcctcacctctcttcctgaattcaaaacatgccatgca
cccactggccttttggtgcctgttgccttcttacacgagatgctggggac
ctccctcgctgagtggccattctgaggtttaaaggcaatattctttgtct
gtctacaggtttgtttcgaatgccagtttccttcccaagtggacacctca
tagagatgacagcatgcctgcattgttcacacctatctcccagtttctag
aacactacttgtcaccctgtagagttcggtcaatttttgatgagtatata
atgaacgaattgagcatagcaagctatgaggccaaggccatgtttacttg
ggtcatgactgcagcagcattcttgtgaaatgtgcctcaaggaagacgtg
ccactacagctgaagagattgaacaatattcatggctgctgactgaagga
gctactcctctcagtgctgttggacgatgccattagaagccctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_54811206_54812237
seq2: B6Ng01-114C05.b_49_1075 (reverse)

seq1  GTCTGACTATGTGTCTGTGTACATAGAT-ACATAAATATAGTAAAAAACA  49
      ||||||||| | |||||||||||||||| | |||||||||||||||||| 
seq2  GTCTGACTA-GGGTCTGTGTACATAGATAAAATAAATATAGTAAAAAAC-  48

seq1  AAACTGATTCTCCCTTTCAATAAACATTTATCTTCATTGAAGTCTAGCAA  99
      ||||||||||| |||||||||||||||||||| ||| ||||||||||| |
seq2  AAACTGATTCT-CCTTTCAATAAACATTTATC-TCA-TGAAGTCTAGC-A  94

seq1  TATTTTGAAAGTTTAAAGATAGCAAAGGGGAAACAAAGCATTGGAAACAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAAAGTTTAAAGATAGCAAAGGGGAAACAAAGCATTGGAAACAA  144

seq1  ACTGGTTGAGCCCGGTTCTTTCCCTGTGGATACAACGACAAGCTTAGAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTGAGCCCGGTTCTTTCCCTGTGGATACAACGACAAGCTTAGAGC  194

seq1  TTTGTCTAAAAAAAAAATAACACTCTGGGGCAAAAGATAATAGGCTGAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAAAAAAAAAATAACACTCTGGGGCAAAAGATAATAGGCTGAGT  244

seq1  GTAGGTCCTTCTTCTGTGACCTGCAAGGCTGCAAGACCTTTCATTCTCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCCTTCTTCTGTGACCTGCAAGGCTGCAAGACCTTTCATTCTCTA  294

seq1  TTAGAATATTCTATTATACTAGGCTCAGGCGGCTCCTTCGGTTAATGGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATATTCTATTATACTAGGCTCAGGCGGCTCCTTCGGTTAATGGTG  344

seq1  ACAGGAAATGTGACTCCAGGGCCACATAACCACAAATACTGGTGGCCTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAATGTGACTCCAGGGCCACATAACCACAAATACTGGTGGCCTAG  394

seq1  AAGCTGGAGTACACTGATAGGATTGGCAAACCCTGCCTAGACTGCTCTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAGTACACTGATAGGATTGGCAAACCCTGCCTAGACTGCTCTTT  444

seq1  GTCAAGGTGGAGAGAAAATACAGTAATGACATACAATCGTTCTTACAGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGTGGAGAGAAAATACAGTAATGACATACAATCGTTCTTACAGGC  494

seq1  TCTGCAGTCGATCTGCAGGATGCCCGGACTGCTCCCTGGGCACCATAACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTCGATCTGCAGGATGCCCGGACTGCTCCCTGGGCACCATAACC  544

seq1  TATCCCCAACCCACAGAAATGGGCCCACAGATGGGAGCATCCATGGTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCAACCCACAGAAATGGGCCCACAGATGGGAGCATCCATGGTAGA  594

seq1  AAAGAAGTCTTCACTCTAAAATTCATTAATTCTTTTGAAATCCAATCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTCTTCACTCTAAAATTCATTAATTCTTTTGAAATCCAATCCTT  644

seq1  CTCCTCCTGTAGAATAGAAACTCGGGCAAAAGAGAACGTATTTCCTTTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTGTAGAATAGAAACTCGGGCAAAAGAGAACGTATTTCCTTTGG  694

seq1  CAGGACTTCTGAGGCAGAAGTTCACGGTAGCAGCATCCTGGAGGAAGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTCTGAGGCAGAAGTTCACGGTAGCAGCATCCTGGAGGAAGCTG  744

seq1  TTCTACCAGATGAGTGGGCACACCCCCAGCCCTAGCCCCAGGGTGAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCAGATGAGTGGGCACACCCCCAGCCCTAGCCCCAGGGTGAGGGA  794

seq1  AGAACCCATTCCCTTTGACCAAGATTGGTTCCAAGGGTATGTGGGCATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCATTCCCTTTGACCAAGATTGGTTCCAAGGGTATGTGGGCATAA  844

seq1  ATCAAGCCAGTGAGATTTGAGAGAGGATTTTGCCAGAAGATTGTGGGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCCAGTGAGATTTGAGAGAGGATTTTGCCAGAAGATTGTGGGAAA  894

seq1  GGTTTCCATTTGCAAAGGGAAGGAAAGAGAAGTGGGGGGAGAGGGGAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCATTTGCAAAGGGAAGGAAAGAGAAGTGGGGGGAGAGGGGAAAT  944

seq1  ACACTGGTACCCTCCTTCCTCCGGACCTGGTCAGGACTTGCTGTGTTAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTACCCTCCTTCCTCCGGACCTGGTCAGGACTTGCTGTGTTAGC  994

seq1  CACAATGTGACCATTTTGCCACCTAGAGAATTC  1032
      |||||||||||||||||||||||||||||||||
seq2  CACAATGTGACCATTTTGCCACCTAGAGAATTC  1027

seq1: chr4_54666076_54667303
seq2: B6Ng01-114C05.g_66_1260

seq1  GAATTCTCAGCAGCTGGTGTCTGACAGATTATCTCATTCCAGACAGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAGCTGGTGTCTGACAGATTATCTCATTCCAGACAGGCAA  50

seq1  ACGGTCCATGGTAAGGAAAGGCTGGAGCCTGAAGAGGCAATTTGGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCCATGGTAAGGAAAGGCTGGAGCCTGAAGAGGCAATTTGGCACAC  100

seq1  ATTGGGGTTTCACCTCTCGATGATGGAGGTCCAAGTGGCCCACCACGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTTTCACCTCTCGATGATGGAGGTCCAAGTGGCCCACCACGTCT  150

seq1  GGGCCTGTGTCCCTCAGAGCTTCTCTCTGGCTCATCGCCTCCCAGAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGTGTCCCTCAGAGCTTCTCTCTGGCTCATCGCCTCCCAGAGCTC  200

seq1  CTGACAGCCATAGAAAAGGGGATTATTCTGTGAGCTAAGCCAGCTCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCCATAGAAAAGGGGATTATTCTGTGAGCTAAGCCAGCTCATCT  250

seq1  CTCACCCCTCCTCTAGGGCACTAATATTCTAACCAGAAGAAGCAATTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCTCCTCTAGGGCACTAATATTCTAACCAGAAGAAGCAATTATG  300

seq1  GTCCCCACTCCGCCCCCAAGCCCCTGCATGCGCTCTGCTCTTTCAGGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCACTCCGCCCCCAAGCCCCTGCATGCGCTCTGCTCTTTCAGGCGT  350

seq1  GGTACAAGCTATTTCCTCACCCCCCCCATGTCTTCACCTCCACAGCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAGCTATTTCCTCACCCCCCCCATGTCTTCACCTCCACAGCAAAC  400

seq1  TCCTGTGTTCCAAACCCATCTAGAGTCCTTCTGCAGAAGAAAGCTAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTCCAAACCCATCTAGAGTCCTTCTGCAGAAGAAAGCTAGTCC  450

seq1  TTGAGATTCAGAAGCTACTAAAACACTTAGCCTGTTATTTTATTACTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTCAGAAGCTACTAAAACACTTAGCCTGTTATTTTATTACTCAG  500

seq1  TTTCACAATCACTTGTTTTCTATGAACTTCTGCACTGCAGCTAGGAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATCACTTGTTTTCTATGAACTTCTGCACTGCAGCTAGGAGGGT  550

seq1  GTTTTCTAATGAAGCCAATGTGTAGGGTACTGTTATAAACACTTTTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAATGAAGCCAATGTGTAGGGTACTGTTATAAACACTTTTCTTC  600

seq1  TATGGACTTGCTTGGTCCTCTTAACCCTAACAGGGAGAGAGAAACTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACTTGCTTGGTCCTCTTAACCCTAACAGGGAGAGAGAAACTGGGT  650

seq1  CTTGATGTTGCATGCTGGGCCCCAGTAAAATTTCCCTGAAGTGGTGGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGTTGCATGCTGGGCCCCAGTAAAATTTCCCTGAAGTGGTGGGGC  700

seq1  TGGAAAAGCCCTGCCTCACCTCTCTTCCTGAATTCAAAACATGCCATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGCCCTGCCTCACCTCTCTTCCTGAATTCAAAACATGCCATGCA  750

seq1  CCCACTGGCCTTTTGGTGCCTGTTGCCTTCTTACACGAGATGCTGGGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGGCCTTTTGGTGCCTGTTGCCTTCTTACACGAGATGCTGGGGAC  800

seq1  CTCCCTCGCTGAGTGGCCATTCTGAGGTTTAAAGGCAATATTCTTTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCGCTGAGTGGCCATTCTGAGGTTTAAAGGCAATATTCTTTGTCT  850

seq1  GTCTACAGGTTTGTTTTCGAATGCCAGTTTCCTTCCCAAGTGGACACCTC  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGGTTTG-TTTCGAATGCCAGTTTCCTTCCCAAGTGGACACCTC  899

seq1  ATAGAGATGACAGCAATGCCTGCATTGTTCACACCTATCTTCCCAGTTTC  950
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  ATAGAGATGACAGC-ATGCCTGCATTGTTCACACCTATC-TCCCAGTTTC  947

seq1  TAGAACACTACTTGTCACCCTGTAGGAGTTCGGTCAATTTTTTGATGAGT  1000
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  TAGAACACTACTTGTCACCCTGTA-GAGTTCGGTCAA-TTTTTGATGAGT  995

seq1  ATATAATGAACGAATTGAGCAATAGCAAGCTATGAGGCCACAGTCTATGT  1050
      |||||||||||||||||||| ||||||||||||||||||| || | ||||
seq2  ATATAATGAACGAATTGAGC-ATAGCAAGCTATGAGGCCA-AGGCCATGT  1043

seq1  TTAACCTGGGTCATGACTGCAGCCAGCA-TCCTGTGAAATGTGCCTCAGA  1099
      || || |||||||||||||||| ||||| || |||||||||||||||| |
seq2  TT-ACTTGGGTCATGACTGCAG-CAGCATTCTTGTGAAATGTGCCTCA-A  1090

seq1  GGAAAGACAGTGCCCACTACAAGCTGAAGAGATTTGAACAATTATCCCAT  1149
      || ||||| ||| ||||||| ||||||||||| |||||||||  |  |||
seq2  GG-AAGAC-GTG-CCACTAC-AGCTGAAGAGA-TTGAACAATATT--CAT  1133

seq1  GGGCTGCTGACTTAGATGGAGTCTAACCTCCTTCTCCAAGTTGCTGTTGG  1199
       |||||||||||  || |||| |||  |||| ||||  || |||||||||
seq2  -GGCTGCTGACT--GAAGGAG-CTA--CTCC-TCTC--AG-TGCTGTTGG  1173

seq1  TACGAGTGGCGATATTAGAACAGCCCTCC  1228
       |||| || |   ||||||  ||||||||
seq2  -ACGA-TGCC---ATTAGA--AGCCCTCC  1195