BAC Information

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BAC

Clone NameB6Ng01-114K21
Chromosome4 (Build37)
Map Location 14,528,009 - 14,677,854
singlet/doubletdoublet
Overlap geneSlc26a7, 1700034K16Rik
Upstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688
Downstream geneOtud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64, LOC100040095
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114K21.bB6Ng01-114K21.g
ACCDH920141DH920142
length1,1281,010
definitionDH920141|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K21, 5' end.DH920142|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,676,723 - 14,677,854)(14,528,009 - 14,529,022)
sequence
gaattccttagatttttagtccctttgaaataattttaaaagatctgtgc
atttttgggcaaagaaaagcttccttcactagctcttctttacccaaact
tcagtgatttgaaaaagaagttggcttaactgaagtgacaaaaacatctt
ttgaaacagggtttctttgtgtaacagctctggccattctggagatggag
ctgtagaccaggctggtcttgaactcacagagatccacctgcctctggct
gctgaggggtaggattaaaggcatgggctaccatgcctggctgacaaaaa
attttaatgactatcaccaggaagcatctcgaggtctgactttgatgtga
aatttagagcaaaacctcatctttgaacgctgtagcaaagctttgcactt
ttcagtaacactcttgtagactctattggcaatctttctactcacctgca
atatcatggcgttatagatctagaaatagcacaggaaggtatttctttgc
atcagtactttatagttgttcagtaatttacaagtttttaaagcaatgtt
tcatgtagtaaaatctgtttgatgttgcacagtcccctggagaagcagac
tcaagctcagacctatttagggctaaatgtattgagacttcagagaagta
attagctagcagacattgccctccgtcttgagtacacagtagaatcctct
ggatagctcgttaaaacccagaatgctgggcttccctcccagagtttccg
agtcagaagactgtggagcccaagaatgtgcatttctattaagttctcag
tgttgctgatgctgcaagtgtggggatcatacttggagaaccacagacct
gaattacagagcaatgtggatctagacctagcactgaagtcttgccaaaa
gcccaggctccacccatcttagtacagggcctctgaaaaatctgttcttt
gtcttagcagtgataaataggggtgtcactgttatgttgcacactggatg
gtcagattctgagaatttcactgggttccttgagtccttgtggatggagc
actgtttgaacaatatagttccttgtatgtggaaggcttctctctagaac
aggtttcagtttgtgaaccacagacaca
gaattctttggtttctggggtagaagactgcatagtatgttcgcatgagc
tggaaaatgatacttctgatggcacagggtcttaagtatgagacaagtgt
tatgaccatatctgtgattctggaggattccaacttgaactttcagtagc
tccttgtcctccaaccagaaaaataaaaatatcccagccaggagactgca
tctttagtccatagatatgtcctttgggtagtcagtttcattctctttga
tgtcccctgagacacagccaagcaaaggagagagagaagaacttacttct
tatttaaagttagagtacattgtttgaagagaaagagatgggcttgatta
gcaaaagtgtggggttgttcagagaatggctagctccttgaccccctaca
accatgatctcaaagttctgctcaatcccatcgacaggccaggacagaaa
ggaacttcaacagtacacggagctcaactgtctactcaggcctgaaaaag
actgctagtgcctctatagcctggacttggccaaccatgactctactgat
ccttccatgggttcttgtttgttcctccttgaggccttagcagacaccca
aaccctgacgagagctaacttaagggaaatggccaaagaaggaaaatcaa
atgaatattagaactgcaggaaaatgatagactcatgcatgtaagaagtt
gaaagaaaaggaataaggatgtatatttttccctcaattttataacttta
aatgtttttattatgtctatgtaaattaggggtatatgccaaggcaaaaa
aaaaaaaaaaaaatgaaggttagaggacaaaggtcaccatcagggttaga
agcaaggacacacccactgtattctcactgccttcaatctataactttaa
caaaataagtagggtgtatatacaggggagttggagagaggaaagctatg
gagtaaatgttgattatatattcaaacttaaaaaacaggaaaaatgcagt
gagacttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_14676723_14677854
seq2: B6Ng01-114K21.b_45_1172 (reverse)

seq1  TGTGTCCCTGTGTTCACATACTGAAACTGTTTCTAG-GAGAAGCCTTTTC  49
      ||||||  || ||||||| ||||||||   |||||| ||||||||  |||
seq2  TGTGTCTGTG-GTTCACAAACTGAAACCTGTTCTAGAGAGAAGCC--TTC  47

seq1  CACATACAAAGGAACTATATTGTTCAAACAGTGCTCCTTCCACAAGGACT  99
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  CACATAC-AAGGAACTATATTGTTCAAACAGTGCTCCATCCACAAGGACT  96

seq1  CAAGG-ACCCAGTGACATTCTCAGAATCTGACCATCCAGTGTGCAACATA  148
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAGGAACCCAGTGAAATTCTCAGAATCTGACCATCCAGTGTGCAACATA  146

seq1  ACAGTGACACCCCCTATTTATCACTGCTAAGACAAAGAACAGATTTTTCA  198
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACA-CCCCTATTTATCACTGCTAAGACAAAGAACAGATTTTTCA  195

seq1  GAGGCCCTGTACTAAGATGGGTGGAGCCTGGGCTTTTGGCAAGACTTCAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTGTACTAAGATGGGTGGAGCCTGGGCTTTTGGCAAGACTTCAG  245

seq1  TGCTAGGTCTAGATCCACATTGCTCTGTAATTCAGGTCTGTGGTTCTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGTCTAGATCCACATTGCTCTGTAATTCAGGTCTGTGGTTCTCCA  295

seq1  AGTATGATCCCCACACTTGCAGCATCAGCAACACCTGAGAACTTAATAGA  348
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTATGATCCCCACACTTGCAGCATCAGCAACA-CTGAGAACTTAATAGA  344

seq1  AATGCACATTCTTGGGCTCCACAGTCTTCTGACTCGGAAACTCTGGGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACATTCTTGGGCTCCACAGTCTTCTGACTCGGAAACTCTGGGAGG  394

seq1  GAAGCCCAGCATTCTGGGTTTTAACGAGCTATCCAGAGGATTCTACTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCAGCATTCTGGGTTTTAACGAGCTATCCAGAGGATTCTACTGTG  444

seq1  TACTCAAGACGGAGGGCAATGTCTGCTAGCTAATTACTTCTCTGAAGTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAGACGGAGGGCAATGTCTGCTAGCTAATTACTTCTCTGAAGTCT  494

seq1  CAATACATTTAGCCCTAAATAGGTCTGAGCTTGAGTCTGCTTCTCCAGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATTTAGCCCTAAATAGGTCTGAGCTTGAGTCTGCTTCTCCAGGG  544

seq1  GACTGTGCAACATCAAACAGATTTTACTACATGAAACATTGCTTTAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCAACATCAAACAGATTTTACTACATGAAACATTGCTTTAAAAA  594

seq1  CTTGTAAATTACTGAACAACTATAAAGTACTGATGCAAAGAAATACCTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAATTACTGAACAACTATAAAGTACTGATGCAAAGAAATACCTTC  644

seq1  CTGTGCTATTTCTAGATCTATAACGCCATGATATTGCAGGTGAGTAGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTATTTCTAGATCTATAACGCCATGATATTGCAGGTGAGTAGAAA  694

seq1  GATTGCCAATAGAGTCTACAAGAGTGTTACTGAAAAGTGCAAAGCTTTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAATAGAGTCTACAAGAGTGTTACTGAAAAGTGCAAAGCTTTGC  744

seq1  TACAGCGTTCAAAGATGAGGTTTTGCTCTAAATTTCACATCAAAGTCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCGTTCAAAGATGAGGTTTTGCTCTAAATTTCACATCAAAGTCAGA  794

seq1  CCTCGAGATGCTTCCTGGTGATAGTCATTAAAATTTTTTGTCAGCCAGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAGATGCTTCCTGGTGATAGTCATTAAAATTTTTTGTCAGCCAGGC  844

seq1  ATGGTAGCCCATGCCTTTAATCCTACCCCTCAGCAGCCAGAGGCAGGTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGCCCATGCCTTTAATCCTACCCCTCAGCAGCCAGAGGCAGGTGG  894

seq1  ATCTCTGTGAGTTCAAGACCAGCCTGGTCTACAGCTCCATCTCCAGAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTGAGTTCAAGACCAGCCTGGTCTACAGCTCCATCTCCAGAATG  944

seq1  GCCAGAGCTGTTACACAAAGAAACCCTGTTTCAAAAGATGTTTTTGTCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCTGTTACACAAAGAAACCCTGTTTCAAAAGATGTTTTTGTCAC  994

seq1  TTCAGTTAAGCCAACTTCTTTTTCAAATCACTGAAGTTTGGGTAAAGAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTAAGCCAACTTCTTTTTCAAATCACTGAAGTTTGGGTAAAGAAG  1044

seq1  AGCTAGTGAAGGAAGCTTTTCTTTGCCCAAAAATGCACAGATCTTTTAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTGAAGGAAGCTTTTCTTTGCCCAAAAATGCACAGATCTTTTAAA  1094

seq1  ATTATTTCAAAGGGACTAAAAATCTAAGGAATTC  1132
      ||||||||||||||||||||||||||||||||||
seq2  ATTATTTCAAAGGGACTAAAAATCTAAGGAATTC  1128

seq1: chr4_14528009_14529022
seq2: B6Ng01-114K21.g_67_1076

seq1  GAATTCTTTGGTTTCTGGGGTAGAAGACTGCATAGTATGTTCGCATGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTTTCTGGGGTAGAAGACTGCATAGTATGTTCGCATGAGC  50

seq1  TGGAAAATGATACTTCTGATGGCACAGGGTCTTAAGTATGAGACAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATGATACTTCTGATGGCACAGGGTCTTAAGTATGAGACAAGTGT  100

seq1  TATGACCATATCTGTGATTCTGGAGGATTCCAACTTGAACTTTCAGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCATATCTGTGATTCTGGAGGATTCCAACTTGAACTTTCAGTAGC  150

seq1  TCCTTGTCCTCCAACCAGAAAAATAAAAATATCCCAGCCAGGAGACTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCCTCCAACCAGAAAAATAAAAATATCCCAGCCAGGAGACTGCA  200

seq1  TCTTTAGTCCATAGATATGTCCTTTGGGTAGTCAGTTTCATTCTCTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTCCATAGATATGTCCTTTGGGTAGTCAGTTTCATTCTCTTTGA  250

seq1  TGTCCCCTGAGACACAGCCAAGCAAAGGAGAGAGAGAAGAACTTACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCTGAGACACAGCCAAGCAAAGGAGAGAGAGAAGAACTTACTTCT  300

seq1  TATTTAAAGTTAGAGTACATTGTTTGAAGAGAAAGAGATGGGCTTGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAGTTAGAGTACATTGTTTGAAGAGAAAGAGATGGGCTTGATTA  350

seq1  GCAAAAGTGTGGGGTTGTTCAGAGAATGGCTAGCTCCTTGACCCCCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTGTGGGGTTGTTCAGAGAATGGCTAGCTCCTTGACCCCCTACA  400

seq1  ACCATGATCTCAAAGTTCTGCTCAATCCCATCGACAGGCCAGGACAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGATCTCAAAGTTCTGCTCAATCCCATCGACAGGCCAGGACAGAAA  450

seq1  GGAACTTCAACAGTACACGGAGCTCAACTGTCTACTCAGGCCTGAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCAACAGTACACGGAGCTCAACTGTCTACTCAGGCCTGAAAAAG  500

seq1  ACTGCTAGTGCCTCTATAGCCTGGACTTGGCCAACCATGACTCTACTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAGTGCCTCTATAGCCTGGACTTGGCCAACCATGACTCTACTGAT  550

seq1  CCTTCCATGGGTTCTTGTTTGTTCCTCCTTGAGGCCTTAGCAGACACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATGGGTTCTTGTTTGTTCCTCCTTGAGGCCTTAGCAGACACCCA  600

seq1  AACCCTGACGAGAGCTAACTTAAGGGAAATGGCCAAAGAAGGAAAATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGACGAGAGCTAACTTAAGGGAAATGGCCAAAGAAGGAAAATCAA  650

seq1  ATGAATATTAGAACTGCAGGAAAATGATAGACTCATGCATGTAAGAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATTAGAACTGCAGGAAAATGATAGACTCATGCATGTAAGAAGTT  700

seq1  GAAAGAAAAGGAATAAGGATGTATATTTTTCCCTCAA-TTTATAACTTTA  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAAGAAAAGGAATAAGGATGTATATTTTTCCCTCAATTTTATAACTTTA  750

seq1  AATG-TTTTATTATGTCTATGTAAATTAGGGGTATATGCCAAGGCAAAAA  798
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTATTATGTCTATGTAAATTAGGGGTATATGCCAAGGCAAAAA  800

seq1  AAAAAAAAAAAAATGAAGGTTAGAGGACAAAGGTCACCATCAGGGTTAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAATGAAGGTTAGAGGACAAAGGTCACCATCAGGGTTAGA  850

seq1  AGCAAGGACACACCCACTGTATTCTCACTGCCTTCAATCTATAACTTTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGACACACCCACTGTATTCTCACTGCCTTCAATCTATAACTTTAA  900

seq1  CAAAATAAGTAGGGTGTATATACAGGGGAGGTTGGAGAGAGGAAAGCTAT  948
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAAATAAGTAGGGTGTATATACAGGGGA-GTTGGAGAGAGGAAAGCTAT  949

seq1  GGAGTAAATGGTGTAATTATAATATCAAAACTAAAAAAAAAAGTAAAAAT  998
      |||||||||| ||  ||||| ||||  |||||  |||||| || ||||||
seq2  GGAGTAAATGTTG--ATTAT-ATATTCAAACT-TAAAAAACAGGAAAAAT  995

seq1  GCAGTGAGAACTTACA  1014
      |||||||| |||||||
seq2  GCAGTGAG-ACTTACA  1010