BAC Information

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BAC

Clone NameB6Ng01-114M13
Chromosome4 (Build37)
Map Location 58,959,328 - 59,078,114
singlet/doubletdoublet
Overlap geneLOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877
Upstream geneTxn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180
Downstream geneLOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114M13.bB6Ng01-114M13.g
ACCDH920216DH920217
length1,056106
definitionDH920216|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M13, 5' end.DH920217|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,077,021 - 59,078,114)(58,959,328 - 58,959,433)
sequence
gaattcttatttttgactaggtactgattataataagaatggactcagat
ggagaaaagcatctgcttattaaaacacttaagaaaatagaaggtaaggg
cacatgtcttgtccttcatttagtaaatgttttaagttataaaaatgtat
tcgtctaactgtcattgacattcaaatactataaatttgtcttctcaaaa
cctaggactcagtgcagtttctctattggtttgattctccagttgctcaa
atgttcatcaggatttaactgacaatttaaaaatcaatgtagactataag
tctataatacatctatgatgtacttatatgtatttttgtttaaaatgtaa
tttttggtttttaaaagagattttagttattttatgtgtatgagtacact
gttgctgtcttcagttacaccagaagagggcatcagatcccattacaaat
ggttgtgagccactatgtggttgctgggaattgaactcaggacctctgga
agagcagtcagtgcccttaaccactgagccatctctccagcccaagaatg
taattttattaagacttttttagattattccccagtttctacattagtac
tgcctacttacaactcggttttataaacaaagaaaaagttcataaagaca
tagcatagtaggtctcataagtagtgattgaggagatgggatttaacccg
gttttctcaagtcaacaaaactgaaaaagaggaatcttgttgaaagaaaa
ctcctttttttttttcccaaacaggtttaacaatgactgttttacgttct
aatgatagaaaaaaattctggaaactaccagtattttaaaaggtaaagta
ttttttttttttttatgtatggcatagttccacagagagaaattcttcct
gatgtccagactgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtg
ctgtgctgtgctgtgctgtgctgtgctgtgctgtgctgtggcttgctgta
ctccagcaagagcagacttcggttgctctacccagagtgatggctcagag
tcaggt
tcagcatcctgggagtagtgtggaggtggtgaccctggtagaagacttga
accaaacacttgaagaaaaggaaggtgagagttacaggtggagggtgggg
gtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59077021_59078114
seq2: B6Ng01-114M13.b_49_1104 (reverse)

seq1  ACCTGAACTCTGGAGCCATCACCTTCCTGGGTGTTAAGGAGCAAACCGAA  50
      ||||| ||||| ||||||||||    ||||||      |||| |||||||
seq2  ACCTG-ACTCT-GAGCCATCAC---TCTGGGT-----AGAGC-AACCGAA  39

seq1  GTCTGGCTCCTGGCCTGTGAGCTACAGCCACAGCCACAGCCACAGCCACA  100
      |||| |||| ||  ||| ||| ||||||   |||||||| ||||| ||||
seq2  GTCT-GCTCTTG--CTG-GAG-TACAGC--AAGCCACAG-CACAG-CACA  80

seq1  GCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGC  150
      | ||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| 
seq2  G-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-  121

seq1  CACAGCCACAGCCACAGCCACAGCCACAGTCTGGACATCAGGAAGAATTT  200
      ||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||
seq2  CACAG-CACAG-CACAG-CACAG-CACAGTCTGGACATCAGGAAGAA-TT  166

seq1  TCTCTTCCTGTGGAACTATGCCATACATAAAAAAAAAAAAAATACTTTAC  250
      |||||  |||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTCT--CTGTGGAACTATGCCATACATAAAAAAAAAAAAAATACTTTA-  213

seq1  CCTTTTAAAATACTGGTAGTTTCCAGAATTTTTTTTCTATCATTAGAACG  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTTTTAAAATACTGGTAGTTTCCAGAA-TTTTTTTCTATCATTAGAACG  262

seq1  TAAAACAGTCATTGTTAAACCTGTTTGGGAAAAAAAAAAAGGAGTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTCATTGTTAAACCTGTTTGGGAAAAAAAAAAAGGAGTTTTCT  312

seq1  TTCAACAAGATTCCTCTTTTTCAGTTTTGTTGACTTGAGAAAACCGGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAGATTCCTCTTTTTCAGTTTTGTTGACTTGAGAAAACCGGGTT  362

seq1  AAATCCCATCTCCTCAATCACTACTTATGAGACCTACTATGCTATGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCATCTCCTCAATCACTACTTATGAGACCTACTATGCTATGTCTT  412

seq1  TATGAACTTTTTCTTTGTTTATAAAACCGAGTTGTAAGTAGGCAGTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTTTTTCTTTGTTTATAAAACCGAGTTGTAAGTAGGCAGTACTA  462

seq1  ATGTAGAAACTGGGGAATAATCTAAAAAAGTCTTAATAAAATTACATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAACTGGGGAATAATCTAAAAAAGTCTTAATAAAATTACATTCT  512

seq1  TGGGCTGGAGAGATGGCTCAGTGGTTAAGGGCACTGACTGCTCTTCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGAGAGATGGCTCAGTGGTTAAGGGCACTGACTGCTCTTCCAGA  562

seq1  GGTCCTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAACCATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAACCATTTGT  612

seq1  AATGGGATCTGATGCCCTCTTCTGGTGTAACTGAAGACAGCAACAGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATCTGATGCCCTCTTCTGGTGTAACTGAAGACAGCAACAGTGTA  662

seq1  CTCATACACATAAAATAACTAAAATCTCTTTTAAAAACCAAAAATTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACACATAAAATAACTAAAATCTCTTTTAAAAACCAAAAATTACAT  712

seq1  TTTAAACAAAAATACATATAAGTACATCATAGATGTATTATAGACTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAAAATACATATAAGTACATCATAGATGTATTATAGACTTATA  762

seq1  GTCTACATTGATTTTTAAATTGTCAGTTAAATCCTGATGAACATTTGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATTGATTTTTAAATTGTCAGTTAAATCCTGATGAACATTTGAGC  812

seq1  AACTGGAGAATCAAACCAATAGAGAAACTGCACTGAGTCCTAGGTTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGAATCAAACCAATAGAGAAACTGCACTGAGTCCTAGGTTTTGA  862

seq1  GAAGACAAATTTATAGTATTTGAATGTCAATGACAGTTAGACGAATACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAAATTTATAGTATTTGAATGTCAATGACAGTTAGACGAATACAT  912

seq1  TTTTATAACTTAAAACATTTACTAAATGAAGGACAAGACATGTGCCCTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAACTTAAAACATTTACTAAATGAAGGACAAGACATGTGCCCTTA  962

seq1  CCTTCTATTTTCTTAAGTGTTTTAATAAGCAGATGCTTTTCTCCATCTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTATTTTCTTAAGTGTTTTAATAAGCAGATGCTTTTCTCCATCTGA  1012

seq1  GTCCATTCTTATTATAATCAGTACCTAGTCAAAAATAAGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTCTTATTATAATCAGTACCTAGTCAAAAATAAGAATTC  1056

seq1: chr4_58959328_58959433
seq2: B6Ng01-114M13.g_72_177

seq1  TCAGCATCCTGGGAGTAGTGTGGAGGTGGTGACCCTGGTAGAAGACTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCCTGGGAGTAGTGTGGAGGTGGTGACCCTGGTAGAAGACTTGA  50

seq1  ACCAAACACTTGAAGAAAAGGAAGGTGAGAGTTACAGGTGGAGGGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACACTTGAAGAAAAGGAAGGTGAGAGTTACAGGTGGAGGGTGGGG  100

seq1  GTGGGG  106
      ||||||
seq2  GTGGGG  106