BAC Information

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BAC

Clone NameB6Ng01-115M22
Chromosome4 (Build37)
Map Location 111,653,927 - 111,803,650
singlet/doubletdoublet
Overlap geneC130057D23Rik, LOC639781, 9530098N22Rik
Upstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774
Downstream geneA430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik, LOC433745, LOC545668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115M22.bB6Ng01-115M22.g
ACCDH920976DH920977
length1,1031,095
definitionDH920976|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M22, 5' end.DH920977|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,653,927 - 111,655,042)(111,802,541 - 111,803,650)
sequence
gaattccctgtcagatgtattgctgacaaagattctttcttatcacctag
ttgattgtttctttatctgtgcagaagctttttagtttcataaatgtcca
ttcatcaaacattaaccttaattcctggggaaatgaggtagtaatgaaga
agtgttttctaagcctctatcatatagcatattggctatactttctttgt
ttttcctggtttcatgtttatatttttgatctacttgaaattaatttttg
tgcaaggtgataaattctagtctaacttaattctgtatgtgaacatccag
tttccccagatacatttgttgaagatgctgtctcagaaaatactaaaaga
ttatagtaatgagcaaaaatcatgtagccaactaaaaaatacactatgca
gtggatagacatcaaatgctaactggttactctaacttgtaaatcaaata
ttgtattaagtcaccaaagttctgagattatagaacaaactattgtttgt
ttgtttgttctgttttttgttttgtttttgtttttgtttttttttaatcc
ttgaaattgtcaattcaacttcaacacagtaccctcattgtatttttttc
tcattttctccagcagttggattggagacagagatacatgttcaggctcc
tgatgctgatggagtcatggtggagtgtaattcaggagggtggttcccaa
ggccccaaatggagtggagagatagtaagggggcaacacttccgcactca
ttaaaatcatattcacaggatgaagccagatttttctatatgaagatgac
tcttctcctcacaaacatgtcacatggcagcatcatttgctgtattttca
accctgtaacaggtgaagagaagcaaacaagtatcattctagcaagtgag
tactgtcatctggcttggctgttaattgggaaacaagacaaaataaggag
gcattaacattaaaaaggcttattttactatggagttctttagtagacag
tattgtcatgtggtatgatgagagtttcagagacagcagacatgacattc
tataattaaaatactgatgcattggaagttatttcagttgacattaaatt
ttt
gaattcaccttggattataatctaggatagattataatcttgctccagta
ggcaaggcccataagaaattcattttcggaaagattcctgctattgatat
ctatatcaatagcaagaatgatttagggtttatctatataaaacttcact
aatacttgatcacaaaaattatgctttttttttttttttactctccatga
acttgttgagtttgggacagataatgaatgtttagctgcataattactcc
taatggatatgcaagtaaatattctctattataaacttcttatacatttt
atgatttggatttatgtgtaatcttgtgatgaactttttaccatgcaatc
acgtattctggaagatgtagaaatgctgaggacaaagagaggaaagcata
ttctccttatcctccttttcatagcaccccttatcccactttgcttaggt
tcccttatccccattttcttagaagcctttttccctttttcttagagagc
tctcctaggaaacatcttagaacttagaaataaaggctaaaactactttt
taaagtgttcctttttccttctgagttcaactagcaatctggcagttaca
gctgcacagttcctgcagatatagaacaaaggctactgtacctaatcccc
tgctgttttaggatgaggtgctaatgccagagactgcatgcagtttctgg
cctcaaaggaactcagacaggcagatcaactatcacagcaaagtgactta
gatgtaagacaagtaaacactttattattatgcaacaaccctaaatatct
cataggaccaattcttaacccctctgctacctcaagaagaaccaaacaag
aaagaaaacctaccagtgctgtcccccagcactatatactgagttaaaaa
tacaaattctgtttaatgatgccaccttaaagaaatgtgcttagagaaat
acaaagtgtgtgcttttcattttgcagtggaaattaaagtgtgtgcatca
tacattttacatttcaaatcaagtgctttttggtctactaagagctgaat
ggctagccggcatggtgtacatgcctttaatccagaactcgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_111653927_111655042
seq2: B6Ng01-115M22.b_48_1150

seq1  GAATTCCCTGTCAGATGTATTGCTGACAAAGATTCTTTCTTATCACCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTCAGATGTATTGCTGACAAAGATTCTTTCTTATCACCTAG  50

seq1  TTGATTGTTTCTTTATCTGTGCAGAAGCTTTTTAGTTTCATAAATGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTTTCTTTATCTGTGCAGAAGCTTTTTAGTTTCATAAATGTCCA  100

seq1  TTCATCAAACATTAACCTTAATTCCTGGGGAAATGAGGTAGTAATGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAACATTAACCTTAATTCCTGGGGAAATGAGGTAGTAATGAAGA  150

seq1  AGTGTTTTCTAAGCCTCTATCATATAGCATATTGGCTATACTTTCTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTCTAAGCCTCTATCATATAGCATATTGGCTATACTTTCTTTGT  200

seq1  TTTTCCTGGTTTCATGTTTATATTTTTGATCTACTTGAAATTAATTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGGTTTCATGTTTATATTTTTGATCTACTTGAAATTAATTTTTG  250

seq1  TGCAAGGTGATAAATTCTAGTCTAACTTAATTCTGTATGTGAACATCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGTGATAAATTCTAGTCTAACTTAATTCTGTATGTGAACATCCAG  300

seq1  TTTCCCCAGATACATTTGTTGAAGATGCTGTCTCAGAAAATACTAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAGATACATTTGTTGAAGATGCTGTCTCAGAAAATACTAAAAGA  350

seq1  TTATAGTAATGAGCAAAAATCATGTAGCCAACTAAAAAATACACTATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTAATGAGCAAAAATCATGTAGCCAACTAAAAAATACACTATGCA  400

seq1  GTGGATAGACATCAAATGCTAACTGGTTACTCTAACTTGTAAATCAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAGACATCAAATGCTAACTGGTTACTCTAACTTGTAAATCAAATA  450

seq1  TTGTATTAAGTCACCAAAGTTCTGAGATTATAGAACAAACTATTGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAAGTCACCAAAGTTCTGAGATTATAGAACAAACTATTGTTTGT  500

seq1  TTGTTTGTTCTGTTTTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTCTGTTTTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTAATCC  550

seq1  TTGAAATTGTCAATTCAACTTCAACACAGTACCCTCATTGTATTTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTGTCAATTCAACTTCAACACAGTACCCTCATTGTATTTTTTTC  600

seq1  TCATTTTCTCCAGCAGTTGGATTGGAGACAGAGATACATGTTCAGGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTCCAGCAGTTGGATTGGAGACAGAGATACATGTTCAGGCTCC  650

seq1  TGATGCTGATGGAGTCATGGTGGAGTGTAATTCAGGAGGGTGGTTCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGATGGAGTCATGGTGGAGTGTAATTCAGGAGGGTGGTTCCCAA  700

seq1  GGCCCCAAATGGAGTGGAGAGATAGTAAGGGGGCAACACTTCCGCACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAAATGGAGTGGAGAGATAGTAAGGGGGCAACACTTCCGCACTCA  750

seq1  TTAAAATCATATTCACAGGATGAAGCCAGATTTTTCTATATGAAGATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCATATTCACAGGATGAAGCCAGATTTTTCTATATGAAGATGAC  800

seq1  TCTTCTCCTCACAAACATGTCACATGGCAGCATCATTTGCTGTATTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTCACAAACATGTCACATGGCAGCATCATTTGCTGTATTTTCA  850

seq1  ACCCTGTAACAGGTGAAGAGAAGCAAACAAGTATCATTCTAGCAAGTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTAACAGGTGAAGAGAAGCAAACAAGTATCATTCTAGCAAGTGAG  900

seq1  TACTGTCATCTGGCTTGGCTGTTAATTGGGAAACAAAGACAAAAATAAGG  950
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  TACTGTCATCTGGCTTGGCTGTTAATTGGGAAAC-AAGAC-AAAATAAGG  948

seq1  AGGCAATTAACATTAAAAAGGCTTATTTTACTATGGAGTTCTTTAAGTAA  1000
      |||| ||||||||||||||||||||||||||||||||||||||| ||| |
seq2  AGGC-ATTAACATTAAAAAGGCTTATTTTACTATGGAGTTCTTT-AGT-A  995

seq1  GACAGGTATTGTCATGTGGTATGATGAGAGTTTCAGAAGACCAGCAGACA  1050
      |||| ||||||||||||||||||||||||||||||| ||| |||||||| 
seq2  GACA-GTATTGTCATGTGGTATGATGAGAGTTTCAG-AGA-CAGCAGAC-  1041

seq1  ATGACATTCTATAATAAAAATACCTTGATGGCCATTGAGAGTTATTTCAG  1100
      ||||||||||||||| |||||||  |||||  |||||  |||||||||||
seq2  ATGACATTCTATAATTAAAATAC--TGATG--CATTGGAAGTTATTTCAG  1087

seq1  TAGACATAATATTTTT  1116
      | ||||| | ||||||
seq2  TTGACATTAAATTTTT  1103

seq1: chr4_111802541_111803650
seq2: B6Ng01-115M22.g_69_1163 (reverse)

seq1  CACCCGAGTGCTGGGATTAAAGGCATGTACCACCATGCCCGGCTTAGCCA  50
      ||||||||| || |||||||||||||||| ||||||| ||||| ||||||
seq2  CACCCGAGTTCT-GGATTAAAGGCATGTA-CACCATG-CCGGC-TAGCCA  46

seq1  TTCAGCTCTTAGTTAGACCAAAAAGCACTTTGGAATTTTGAAAATGTAAA  100
      |||||||||||| |||||||||||||||||  ||  |||| |||||||||
seq2  TTCAGCTCTTAG-TAGACCAAAAAGCACTT--GA--TTTG-AAATGTAAA  90

seq1  ATTGTATGATGCACACACTTTAATTTTCCAACCTGCAAAATGAAAAGCAC  150
      | ||||||||||||||||||||| ||||||  ||||||||||||||||||
seq2  A-TGTATGATGCACACACTTTAA-TTTCCA--CTGCAAAATGAAAAGCAC  136

seq1  ACACTTTTGTATTTCTCTAAGCACATTTCTTTAAGGTGGCATCATTAAAC  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAC-TTTGTATTTCTCTAAGCACATTTCTTTAAGGTGGCATCATTAAAC  185

seq1  AGAATTTGTATTTTTAACTCAGTATATAGTGCTGGGGGACAGCACTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGTATTTTTAACTCAGTATATAGTGCTGGGGGACAGCACTGGTA  235

seq1  GGTTTTCTTTCTTGTTTGGTTCTTCTTGAGGTAGCAGAGGGGTTAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTTTCTTGTTTGGTTCTTCTTGAGGTAGCAGAGGGGTTAAGAAT  285

seq1  TGGTCCTATGAGATATTTAGGGTTGTTGCATAATAATAAAGTGTTTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTATGAGATATTTAGGGTTGTTGCATAATAATAAAGTGTTTACTT  335

seq1  GTCTTACATCTAAGTCACTTTGCTGTGATAGTTGATCTGCCTGTCTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACATCTAAGTCACTTTGCTGTGATAGTTGATCTGCCTGTCTGAGT  385

seq1  TCCTTTGAGGCCAGAAACTGCATGCAGTCTCTGGCATTAGCACCTCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAGGCCAGAAACTGCATGCAGTCTCTGGCATTAGCACCTCATCC  435

seq1  TAAAACAGCAGGGGATTAGGTACAGTAGCCTTTGTTCTATATCTGCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGCAGGGGATTAGGTACAGTAGCCTTTGTTCTATATCTGCAGGA  485

seq1  ACTGTGCAGCTGTAACTGCCAGATTGCTAGTTGAACTCAGAAGGAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCAGCTGTAACTGCCAGATTGCTAGTTGAACTCAGAAGGAAAAAG  535

seq1  GAACACTTTAAAAAGTAGTTTTAGCCTTTATTTCTAAGTTCTAAGATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTTAAAAAGTAGTTTTAGCCTTTATTTCTAAGTTCTAAGATGTT  585

seq1  TCCTAGGAGAGCTCTCTAAGAAAAAGGGAAAAAGGCTTCTAAGAAAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGAGAGCTCTCTAAGAAAAAGGGAAAAAGGCTTCTAAGAAAATGG  635

seq1  GGATAAGGGAACCTAAGCAAAGTGGGATAAGGGGTGCTATGAAAAGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGGGAACCTAAGCAAAGTGGGATAAGGGGTGCTATGAAAAGGAGG  685

seq1  ATAAGGAGAATATGCTTTCCTCTCTTTGTCCTCAGCATTTCTACATCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGAATATGCTTTCCTCTCTTTGTCCTCAGCATTTCTACATCTTC  735

seq1  CAGAATACGTGATTGCATGGTAAAAAGTTCATCACAAGATTACACATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACGTGATTGCATGGTAAAAAGTTCATCACAAGATTACACATAAA  785

seq1  TCCAAATCATAAAATGTATAAGAAGTTTATAATAGAGAATATTTACTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATCATAAAATGTATAAGAAGTTTATAATAGAGAATATTTACTTGC  835

seq1  ATATCCATTAGGAGTAATTATGCAGCTAAACATTCATTATCTGTCCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATTAGGAGTAATTATGCAGCTAAACATTCATTATCTGTCCCAAA  885

seq1  CTCAACAAGTTCATGGAGAGTAAAAAAAAAAAAAAAGCATAATTTTTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAAGTTCATGGAGAGTAAAAAAAAAAAAAAAGCATAATTTTTGTG  935

seq1  ATCAAGTATTAGTGAAGTTTTATATAGATAAACCCTAAATCATTCTTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTATTAGTGAAGTTTTATATAGATAAACCCTAAATCATTCTTGCT  985

seq1  ATTGATATAGATATCAATAGCAGGAATCTTTCCGAAAATGAATTTCTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATAGATATCAATAGCAGGAATCTTTCCGAAAATGAATTTCTTAT  1035

seq1  GGGCCTTGCCTACTGGAGCAAGATTATAATCTATCCTAGATTATAATCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTGCCTACTGGAGCAAGATTATAATCTATCCTAGATTATAATCCA  1085

seq1  AGGTGAATTC  1110
      ||||||||||
seq2  AGGTGAATTC  1095