BAC Information

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BAC

Clone NameB6Ng01-116F22
Chromosome4 (Build37)
Map Location 143,249,556 - 143,398,235
singlet/doubletdoublet
Overlap geneLOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009
Upstream geneLOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185
Downstream geneOTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116F22.bB6Ng01-116F22.g
ACCDH921385DH921386
length6351,187
definitionDH921385|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F22, 5' end.DH921386|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,249,556 - 143,250,167)(143,397,010 - 143,398,235)
sequence
gaattcactttacaataatcagaatggctaagataaaaaactcaagtgac
ttcacattctggtgagaatgtggagaaaggggaacacgcattgctggtga
aattgctaactggtgcaaccataatggatatcgatctggtggtttctcag
aaaattggaaacagttctacctgaagacccagatataccactctggagca
tatatccagaagatagccaacaatactacaaagaaatatactccactata
ttcacagcaggcttatttgtaatagccaaaaaactggaaacaacttaaga
tagccctcaacctaaaaatgggtatagaaaatgtagttcatttacacagt
gaaatactatttagctacttaaaatgaggatatcatgaattttgcaggca
catgaatggaactagaaaatattaccctgagtgaggtaaatgagactcaa
aatgacatgcatgttatgtactaattagtaagtgagccattgggtaaaaa
ttatagagtatctaggatacaggcaaggcaatcttatgttgagagaactc
atctcagaaagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagagagagagagagagggagag
gaattctttagctttcacaaagagaactgcaacaataaagataatgaaaa
tagtccctgacaacatctgttttggacacaagcaaccaatcagaaggcaa
gttttggttttaaggtggaacaaagagggagaacagtgagggtttaatga
gcctggttctcatttttcatacacattgcactgtgttaaaacctaagata
ctatgagtgagttttttgtaaaattttactactttccatagagagatggg
tgcagaggatttatttttacagaaataatgtgaaatactgtaaaaattag
gttgagagtactttatacatacagggaagaaaaggaagttattttccatt
atgaaacacacatgaatgtttaggtataaggtgaacagaaagaaagattt
atgtcaaaaaagacaagaaaaaagaatgaaaattgatcagaaggatttga
aactgtcttacattctaggaggggtagcacatgccattagttccattatt
gttcaggaagaagcatggagatttcagtgggttgggagtcagcctaatct
aagtagtgagttctggccagggatatttcagtgaggtcttttctgaaatg
acagcagcaataacaacaacaacaacaaatacaaaacactgcaattacaa
tcaaaaccatgtcttcatccagttcttcttaaaagtctgaacttatgctc
ttctgtcccatctcctttctaatgattctagatctgatggagcaccccag
tggaggaaggtgatctacaggcagtgagggctgattgggagaaactaaac
ccaggacccggcagtgagtctcatattctctccttccagagtcttctctg
attctgaagcagtgagacacctgtccctcataaatctcccttccagatct
acctgcaaagttaaactgccaggttattggatgcctgagtcctaccaaat
atacatatatttcatttactgtctaaatggatgatgtccctctatgaaat
accaggtacctgagatgctgacttcagagcccatattaaatcctgcacaa
cactggttattactacttagtgctacttggttctagctagaatgtatctg
gagacaggtcatttttaggctagatcgagatttcagtctcggaatcctac
ctagcttctgctagacgacgtgaataaaccaccaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143249556_143250167
seq2: B6Ng01-116F22.b_70_681

seq1  ATGGCTAAGATAAAAAACTCAAGTGACTTCACATTCTGGTGAGAATGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAGATAAAAAACTCAAGTGACTTCACATTCTGGTGAGAATGTGG  50

seq1  AGAAAGGGGAACACGCATTGCTGGTGAAATTGCTAACTGGTGCAACCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGGAACACGCATTGCTGGTGAAATTGCTAACTGGTGCAACCATA  100

seq1  ATGGATATCGATCTGGTGGTTTCTCAGAAAATTGGAAACAGTTCTACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATCGATCTGGTGGTTTCTCAGAAAATTGGAAACAGTTCTACCTG  150

seq1  AAGACCCAGATATACCACTCTGGAGCATATATCCAGAAGATAGCCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAGATATACCACTCTGGAGCATATATCCAGAAGATAGCCAACAA  200

seq1  TACTACAAAGAAATATACTCCACTATATTCACAGCAGGCTTATTTGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAAAGAAATATACTCCACTATATTCACAGCAGGCTTATTTGTAAT  250

seq1  AGCCAAAAAACTGGAAACAACTTAAGATAGCCCTCAACCTAAAAATGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAAAACTGGAAACAACTTAAGATAGCCCTCAACCTAAAAATGGGT  300

seq1  ATAGAAAATGTAGTTCATTTACACAGTGAAATACTATTTAGCTACTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATGTAGTTCATTTACACAGTGAAATACTATTTAGCTACTTAAA  350

seq1  ATGAGGATATCATGAATTTTGCAGGCACATGAATGGAACTAGAAAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGATATCATGAATTTTGCAGGCACATGAATGGAACTAGAAAATATT  400

seq1  ACCCTGAGTGAGGTAAATGAGACTCAAAATGACATGCATGTTATGTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGTGAGGTAAATGAGACTCAAAATGACATGCATGTTATGTACTA  450

seq1  ATTAGTAAGTGAGCCATTGGGTAAAAATTATAGAGTATCTAGGATACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAAGTGAGCCATTGGGTAAAAATTATAGAGTATCTAGGATACAGG  500

seq1  CAAGGCAATCTTATGTTGAGAGAACTCATCTCAGAAAGAGAGAGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAATCTTATGTTGAGAGAACTCATCTCAGAAAGAGAGAGAGAGAG  550

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  600

seq1  AGAGAGGGAGAG  612
      ||||||||||||
seq2  AGAGAGGGAGAG  612

seq1: chr4_143397010_143398235
seq2: B6Ng01-116F22.g_68_1254 (reverse)

seq1  GCCTGGTGGGTTTATTCTAAACTGTCGTCCTCGCAGGAAAAAGGCTGAGG  50
      ||||||| |||||||||   || ||||| || ||||     | ||| |||
seq2  GCCTGGT-GGTTTATTC---AC-GTCGT-CTAGCAG-----AAGCT-AGG  38

seq1  TAGGAGAATTCCGGAGACTTGAAA--TCGATCTAAGCCTAAAAAATGGAC  98
      ||||   ||||| ||||| |||||  ||||||| ||||||||||   |||
seq2  TAGG---ATTCC-GAGAC-TGAAATCTCGATCT-AGCCTAAAAA--TGAC  80

seq1  TTTGTCTCAAAGATACATCTAAGACTAAGAAACAAAGTAGCAACTAAGTA  148
        ||||||  ||||||||   || |||   ||| ||||||| ||||||| 
seq2  -CTGTCTC-CAGATACATTCTAG-CTA--GAACCAAGTAGC-ACTAAGT-  123

seq1  AGTAAAATAAACCAGTGTTGTGCAGGGATTTAATAATTGGGCTCTGGAAG  198
      |||||    ||||||||||||||| ||||||||||  |||||||| ||||
seq2  AGTAA---TAACCAGTGTTGTGCA-GGATTTAATA--TGGGCTCT-GAAG  166

seq1  TTCAAGCAATTCTCAGGTACTTGGTATTTCATAGAGGGAACATCATCCAT  248
      |   ||||  |||||||||| ||||||||||||||||| |||||||||||
seq2  T--CAGCA--TCTCAGGTACCTGGTATTTCATAGAGGG-ACATCATCCAT  211

seq1  TTAGACAGTAAATGAAATATATGTATTATTTGGTAGGACTCAGGCATCCA  298
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTAGACAGTAAATGAAATATATGTA-TATTTGGTAGGACTCAGGCATCCA  260

seq1  ATAAACTGGCAGTTTTAACTTTGCAGGTAGATCTGGAAGGGAGATTTATG  348
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGGCAG-TTTAACTTTGCAGGTAGATCTGGAAGGGAGATTTATG  309

seq1  AGGGACAGGTGTCTCACTGCTTCAGAATCAGAGAAGACTCTGGAAGGAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGGTGTCTCACTGCTTCAGAATCAGAGAAGACTCTGGAAGGAGA  359

seq1  GAATATGAGACTCACTGCCGGGTCCTGGGTTTAGTTTCTCCCAATCAGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAGACTCACTGCCGGGTCCTGGGTTTAGTTTCTCCCAATCAGCC  409

seq1  CTCACTGCCTGTAGATCACCTTCCTCCACTGGGGTGCTCCATCAGATCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCCTGTAGATCACCTTCCTCCACTGGGGTGCTCCATCAGATCTA  459

seq1  GAATCATTAGAAAGGAGATGGGACAGAAGAGCATAAGTTCAGACTTTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTAGAAAGGAGATGGGACAGAAGAGCATAAGTTCAGACTTTTAA  509

seq1  GAAGAACTGGATGAAGACATGGTTTTGATTGTAATTGCAGTGTTTTGTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTGGATGAAGACATGGTTTTGATTGTAATTGCAGTGTTTTGTAT  559

seq1  TTGTTGTTGTTGTTGTTATTGCTGCTGTCATTTCAGAAAAGACCTCACTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTGTTATTGCTGCTGTCATTTCAGAAAAGACCTCACTG  609

seq1  AAATATCCCTGGCCAGAACTCACTACTTAGATTAGGCTGACTCCCAACCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCCTGGCCAGAACTCACTACTTAGATTAGGCTGACTCCCAACCC  659

seq1  ACTGAAATCTCCATGCTTCTTCCTGAACAATAATGGAACTAATGGCATGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATCTCCATGCTTCTTCCTGAACAATAATGGAACTAATGGCATGT  709

seq1  GCTACCCCTCCTAGAATGTAAGACAGTTTCAAATCCTTCTGATCAATTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCCTCCTAGAATGTAAGACAGTTTCAAATCCTTCTGATCAATTTT  759

seq1  CATTCTTTTTTCTTGTCTTTTTTGACATAAATCTTTCTTTCTGTTCACCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTTTTCTTGTCTTTTTTGACATAAATCTTTCTTTCTGTTCACCT  809

seq1  TATACCTAAACATTCATGTGTGTTTCATAATGGAAAATAACTTCCTTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTAAACATTCATGTGTGTTTCATAATGGAAAATAACTTCCTTTTC  859

seq1  TTCCCTGTATGTATAAAGTACTCTCAACCTAATTTTTACAGTATTTCACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTATGTATAAAGTACTCTCAACCTAATTTTTACAGTATTTCACA  909

seq1  TTATTTCTGTAAAAATAAATCCTCTGCACCCATCTCTCTATGGAAAGTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGTAAAAATAAATCCTCTGCACCCATCTCTCTATGGAAAGTAG  959

seq1  TAAAATTTTACAAAAAACTCACTCATAGTATCTTAGGTTTTAACACAGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTACAAAAAACTCACTCATAGTATCTTAGGTTTTAACACAGTG  1009

seq1  CAATGTGTATGAAAAATGAGAACCAGGCTCATTAAACCCTCACTGTTCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGTATGAAAAATGAGAACCAGGCTCATTAAACCCTCACTGTTCTC  1059

seq1  CCTCTTTGTTCCACCTTAAAACCAAAACTTGCCTTCTGATTGGTTGCTTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGTTCCACCTTAAAACCAAAACTTGCCTTCTGATTGGTTGCTTG  1109

seq1  TGTCCAAAACAGATGTTGTCAGGGACTATTTTCATTATCTTTATTGTTGC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAAACAGATGTTGTCAGGGACTATTTTCATTATCTTTATTGTTGC  1159

seq1  AGTTCTCTTTGTGAAAGCTAAAGAATTC  1226
      ||||||||||||||||||||||||||||
seq2  AGTTCTCTTTGTGAAAGCTAAAGAATTC  1187