BAC Information

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BAC

Clone NameB6Ng01-116G09
Chromosome4 (Build37)
Map Location 17,873,836 - 18,058,442
singlet/doubletdoublet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116G09.bB6Ng01-116G09.g
ACCDH921406DH921407
length1,089532
definitionDH921406|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G09, 5' end.DH921407|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,873,836 - 17,874,942)(18,057,905 - 18,058,442)
sequence
gaattcttgacccaaatataattcatctttttgctatttcattttgtgtt
ccttccctattctaatgctgtattttccaagagtcagactgatcaggaaa
aagtaggagacaatatttaacatgaattaagtctttagtgttatgagtgg
ccaaggattctatcataataattgctaataaaaccatagaggggtgaaaa
gaggaattgatagggatttctttcagcctattacagcaataattttcaga
aaaaaattaagctttctgccggtcactgacaagagcagaggtttcactca
aacaaatctgtcccatagaatacttctctaagtcaggctggtttctattc
cacttgacataaaacccaaattctcaacaagcatatatggccttgggaac
atttcctttttctagactacaatttttggacactgtaatttccattccgt
ttcattctctataagcttaatgtcagagttgaaggccagataagtaaatg
acttgaaacgttaagtgttctcattctccagaaggaagcaacttaaaatc
acgtatgtcagtcgtctgaatctagacttctgagatcaaagaacatttgt
atgtagtttggctataacagatgcctgtgtagtcaaaacaaagctacaat
caataagataaccaaccatgtgaacaaacagccatcacttacagctcatt
ttatttttttttctgatgtatccttgttagaattaatttttccctacaag
ataacttgaggcaaaccatggaggttttttttttaagttatattcttaaa
cttttcatactcttacattactgggatacttagtgtataagatggacttg
tacacataaattctctgagtactattttatttttagagtggaccatcagt
ttgtgcttccatgtggcattcaaatgaagagtttctgcctgtgtggaaat
tatatagactatataatatagtgtacttttgtgtctgtctctcagcattt
atgatcctgtttaattctctgaccatagttactagtgatgctctgtcaat
agaaaacacacagactttgttgtaattcagtttcttaaa
aacccttgccatgggggaaaaatcagacgtttcagctacagatattggtc
ctctggaagcagggaggcctatacaggggtcttaagcactgggctggttt
cctgtttgaatttagtccactgccctctacctacctccactgagacatac
tctttgtgtctggcagcttaccgctcaattttcttgggtctgtttatctg
gtttttacagttgcactgccttcccaacccctgaatgctcttgccccatt
tcttgtactttattccctgtatcttttggggggggagagagaggagaaaa
tattggatttttcaccatttgacctgaaagcatcacacaaattttagatg
tagtcccacaccaacaaaaatcaatgaagtctcagaggacagcaatcata
agcatagtagtttagtagttgttccaagtaacaaataattttaaaaccat
tttgtttcttgcctttgagctgtttgtccgttctattttcttcctgactt
gccttcttttttttttttttatttctgagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17873836_17874942
seq2: B6Ng01-116G09.b_45_1133

seq1  GAATTCTTGACCCAAATATAATTCATCTTTTTGCTATTTCATTTTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACCCAAATATAATTCATCTTTTTGCTATTTCATTTTGTGTT  50

seq1  CCTTCCCTATTCTAATGCTGTATTTTCCAAGAGTCAGACTGATCAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTATTCTAATGCTGTATTTTCCAAGAGTCAGACTGATCAGGAAA  100

seq1  AAGTAGGAGACAATATTTAACATGAATTAAGTCTTTAGTGTTATGAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGAGACAATATTTAACATGAATTAAGTCTTTAGTGTTATGAGTGG  150

seq1  CCAAGGATTCTATCATAATAATTGCTAATAAAACCATAGAGGGGTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATTCTATCATAATAATTGCTAATAAAACCATAGAGGGGTGAAAA  200

seq1  GAGGAATTGATAGGGATTTCTTTCAGCCTATTACAGCAATAATTTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTGATAGGGATTTCTTTCAGCCTATTACAGCAATAATTTTCAGA  250

seq1  AAAAAATTAAGCTTTCTGCCGGTCACTGACAAGAGCAGAGGTTTCACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAGCTTTCTGCCGGTCACTGACAAGAGCAGAGGTTTCACTCA  300

seq1  AACAAATCTGTCCCATAGAATACTTCTCTAAGTCAGGCTGGTTTCTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCTGTCCCATAGAATACTTCTCTAAGTCAGGCTGGTTTCTATTC  350

seq1  CACTTGACATAAAACCCAAATTCTCAACAAGCATATATGGCCTTGGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGACATAAAACCCAAATTCTCAACAAGCATATATGGCCTTGGGAAC  400

seq1  ATTTCCTTTTTCTAGACTACAATTTTTGGACACTGTAATTTCCATTCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTTTCTAGACTACAATTTTTGGACACTGTAATTTCCATTCCGT  450

seq1  TTCATTCTCTATAAGCTTAATGTCAGAGTTGAAGGCCAGATAAGTAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTCTATAAGCTTAATGTCAGAGTTGAAGGCCAGATAAGTAAATG  500

seq1  ACTTGAAACGTTAAGTGTTCTCATTCTCCAGAAGGAAGCAACTTAAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAACGTTAAGTGTTCTCATTCTCCAGAAGGAAGCAACTTAAAATC  550

seq1  ACGTATGTCAGTCGTCTGAATCTAGACTTCTGAGATCAAAGAACATTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATGTCAGTCGTCTGAATCTAGACTTCTGAGATCAAAGAACATTTGT  600

seq1  ATGTAGTTTGGCTATAACAGATGCCTGTGTAGTCAAAACAAAGCTACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTTGGCTATAACAGATGCCTGTGTAGTCAAAACAAAGCTACAAT  650

seq1  CAATAAGATAACCAACCATGTGAACAAACAGCCATCACTTACAGCTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGATAACCAACCATGTGAACAAACAGCCATCACTTACAGCTCATT  700

seq1  TTATTTTTTTTTCTGATGTATCCTTGTTAGAATTAATTTTTCCCTACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTTTCTGATGTATCCTTGTTAGAATTAATTTTTCCCTACAAG  750

seq1  ATAACTTGAGGCAAACCATGGAGGTTTTTTTTTTAAGTTATATTCTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTGAGGCAAACCATGGAGGTTTTTTTTTTAAGTTATATTCTTAAA  800

seq1  CTTTTCATACTCTTACATTACTGGGATACTTAGTGTATAAGATGGACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATACTCTTACATTACTGGGATACTTAGTGTATAAGATGGACTTG  850

seq1  TACACATAAATTCTCTGAGTACTATTTTATTTTTAGAGTGGACCATCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAAATTCTCTGAGTACTATTTTATTTTTAGAGTGGACCATCAGT  900

seq1  TTGTGCTTCCATGTGGCATTCAAATGAAGAGTTTCTGCCTGTGTGGAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTCCATGTGGCATTCAAATGAAGAGTTTCTGCCTGTGTGGAAAT  950

seq1  TATATAGACTATATAATAATAGTGTACTTTTGTGGTCTTGTCTCCTCAGC  1000
      ||||||||||||||||| ||||||||||||||| ||| ||||| ||||||
seq2  TATATAGACTATATAAT-ATAGTGTACTTTTGT-GTC-TGTCT-CTCAGC  996

seq1  AATTTATGAATCCTTGTTTTAAATTTCTCTGACCATAGTTACTAGTGATG  1050
       ||||||| |||| |||||   | ||||||||||||||||||||||||||
seq2  -ATTTATG-ATCC-TGTTT---AATTCTCTGACCATAGTTACTAGTGATG  1040

seq1  CTCTGTCCACATAAGGAAAACACACAGAACTTTGTTGTAAATATCAATTT  1100
      ||||||| | |    |||||||||||| |||||||||||   ||  | ||
seq2  CTCTGTCAATA----GAAAACACACAG-ACTTTGTTGTA---ATTCAGTT  1082

seq1  TCTTAAA  1107
      |||||||
seq2  TCTTAAA  1089

seq1: chr4_18057905_18058442
seq2: B6Ng01-116G09.g_68_605 (reverse)

seq1  ATACTCAGAAATAAAAAAAAAAAAAAGAAGGCAAGTCAGGAAGAAAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAGAAATAAAAAAAAAAAAAAGAAGGCAAGTCAGGAAGAAAATAG  50

seq1  AACGGACAAACAGCTCAAAGGCAAGAAACAAAATGGTTTTAAAATTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGACAAACAGCTCAAAGGCAAGAAACAAAATGGTTTTAAAATTATTT  100

seq1  GTTACTTGGAACAACTACTAAACTACTATGCTTATGATTGCTGTCCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTGGAACAACTACTAAACTACTATGCTTATGATTGCTGTCCTCTG  150

seq1  AGACTTCATTGATTTTTGTTGGTGTGGGACTACATCTAAAATTTGTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCATTGATTTTTGTTGGTGTGGGACTACATCTAAAATTTGTGTGA  200

seq1  TGCTTTCAGGTCAAATGGTGAAAAATCCAATATTTTCTCCTCTCTCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAGGTCAAATGGTGAAAAATCCAATATTTTCTCCTCTCTCTCCC  250

seq1  CCCCCAAAAGATACAGGGAATAAAGTACAAGAAATGGGGCAAGAGCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAAAGATACAGGGAATAAAGTACAAGAAATGGGGCAAGAGCATTC  300

seq1  AGGGGTTGGGAAGGCAGTGCAACTGTAAAAACCAGATAAACAGACCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGGGAAGGCAGTGCAACTGTAAAAACCAGATAAACAGACCCAAG  350

seq1  AAAATTGAGCGGTAAGCTGCCAGACACAAAGAGTATGTCTCAGTGGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAGCGGTAAGCTGCCAGACACAAAGAGTATGTCTCAGTGGAGGT  400

seq1  AGGTAGAGGGCAGTGGACTAAATTCAAACAGGAAACCAGCCCAGTGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGGGCAGTGGACTAAATTCAAACAGGAAACCAGCCCAGTGCTTA  450

seq1  AGACCCCTGTATAGGCCTCCCTGCTTCCAGAGGACCAATATCTGTAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTGTATAGGCCTCCCTGCTTCCAGAGGACCAATATCTGTAGCTG  500

seq1  AAACGTCTGATTTTTCCCCCATGGCAAGGGTTGAATTC  538
      ||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCTGATTTTTCCCCCATGGCAAGGGTTGAATTC  538