BAC Information

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BAC

Clone NameB6Ng01-117L13
Chromosome4 (Build37)
Map Location 56,975,117 - 57,123,767
singlet/doubletdoublet
Overlap gene6430704M03Rik, Epb4.1l4b
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik
Downstream genePtpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117L13.bB6Ng01-117L13.g
ACCDH922389DH922390
length1,1841,069
definitionDH922389|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L13, 5' end.DH922390|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,975,117 - 56,976,319)(57,122,687 - 57,123,767)
sequence
gaattctcctatttttaatcattataataattttacagcttcagggacat
ccacatttttaatttttcctaacagcgatatataatcgtttttccataac
tccacactaattgagaagatattttagataaatacaaaccactcgcttat
ccctagaatctctcccatattccctatcaaccgtgtgactatctaaaagc
atttatgcgccacagaaaagttctcgagagcctgatgatacaccgtgaca
tcctataaagatctccacggccacatgcaaggtgaccctcttgttcagga
ctgaaagtaaagactgctcaaagcaaagactgttctgaggtctactttcc
atgtctagttctccctaccgtactgtatgttgtctgatcatgttagccaa
ggctgtgagacacgtgggtcagcaaaaggcaccctttgtctgggtttaaa
tcaatatgatggccctcacagttttaccaagccaatgcatagacattgta
aagctcaaacagagaacatatttggaagtgtttgcaaatgttttaagtgc
ttcccgaaagtagcgttgccttgacaatcctgcctgaccaggagagaggc
ttgcgcttttttttttcttctcccaaaaatgttgaaatcatgacttgttt
ttagatcatagaagcgaaaattatacaggcggttactgaaaaatagatac
tgaagggttttcactccatctagtctgtggctggcagcggtggttaaggg
gttcccatcagcaggtagaaggtcagggcgacaatgagaagcagacaaaa
tggcgaggagaaaggtctggtaggcagccgacggcatgaaaatgtcttcg
tacttgtaaatactgacaacgcgctctgaagcccgtggagagtctatgtc
gtgacgagtgatggcgcctttaacatagaagtaggggaggacccatcaaa
gcagcacagaactaaagggcagagacaacactaaatgcatattgtttatt
aaattctggatcagtacagagtcagcatcagactctctgtactgctcgta
tgaggaaagcacagaaatctttccttacacccaagagagttcttatgatc
tgcagtcacccgagatcagacagccactgaatttctctgtctgtgcagca
gtctaatgttacttgtgtgactgatgattctact
gaattcctcacgggattagaatggggagatcagacttttgaaacagtggg
tcgtttgaaaacttttgtgggggacagaagagtctccttaatcggttggc
gctaatgcttgcatcaacctccgaacgccagatggcagtgaagcaaaaag
acgagcaggggagtgtgctgggcctagagttgagcttgctgcaggtgagg
ataggaacagggtttggagaagggcattggaggcaaaggaaagggcacaa
gtcaagctgtagaggtaggggctgctatggaaggtggtatgacgtcgtat
ctgggggcttcagagcttggctgggattcagggtactcagagggccctag
cagaggccgaacttgttaggatttaggcaaggatggttttgcaaagtcac
ggatcaggctgcagggcatccacaaaacacttgcttctctggtgagtgct
ctccggtgcagagaaggattgtcttgaatgacagttcccttcagagacac
agagaagggtggtagtggacagacaggaaactagaggtatcgggaccgtt
tggggtcattgctgttgtctgggtgtgaagtgacatgctgtggaggtgga
agggaacacaggcacgcagggacacagcatgggatgggggtggaacaggt
gcgttgagagggctcctgcagccgctttacattgtttcgacgctgtgcct
tcccagtttagctcacaactagaacatgtacacttattcagggagcatgc
gcagcttagcccatgccttcctttgaagtctacctgggatgcctagcatt
ttctactttcggagatgaaatgagatttggacagttggctttctaccatc
tttgttccacagctggatctgacttgtttgcctcgaagccggggcaggtt
gcagtaggtatggccagtagtgtcttatctaagtcgtgtagttcatagtt
tgttagggcatgaagtgagacactagctgtccagcagtcttctcctttat
cagaacatgactgggaccggtgatcagcagtagctctttgctgacagcaa
gagatgtgtagatccctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_56975117_56976319
seq2: B6Ng01-117L13.b_47_1230

seq1  GAATTCTCCTATTTTTAATCATTATAATAATTTTACAGCTTCAGGGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTATTTTTAATCATTATAATAATTTTACAGCTTCAGGGACAT  50

seq1  CCACATTTTTAATTTTTCCTAACAGCGATATATAATCGTTTTTCCATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTTTAATTTTTCCTAACAGCGATATATAATCGTTTTTCCATAAC  100

seq1  TCCACACTAATTGAGAAGATATTTTAGATAAATACAAACCACTCGCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTAATTGAGAAGATATTTTAGATAAATACAAACCACTCGCTTAT  150

seq1  CCCTAGAATCTCTCCCATATTCCCTATCAACCGTGTGACTATCTAAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGAATCTCTCCCATATTCCCTATCAACCGTGTGACTATCTAAAAGC  200

seq1  ATTTATGCGCCACAGAAAAGTTCTCGAGAGCCTGATGATACACCGTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCGCCACAGAAAAGTTCTCGAGAGCCTGATGATACACCGTGACA  250

seq1  TCCTATAAAGATCTCCACGGCCACATGCAAGGTGACCCTCTTGTTCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAAAGATCTCCACGGCCACATGCAAGGTGACCCTCTTGTTCAGGA  300

seq1  CTGAAAGTAAAGACTGCTCAAAGCAAAGACTGTTCTGAGGTCTACTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTAAAGACTGCTCAAAGCAAAGACTGTTCTGAGGTCTACTTTCC  350

seq1  ATGTCTAGTTCTCCCTACCGTACTGTATGTTGTCTGATCATGTTAGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAGTTCTCCCTACCGTACTGTATGTTGTCTGATCATGTTAGCCAA  400

seq1  GGCTGTGAGACACGTGGGTCAGCAAAAGGCACCCTTTGTCTGGGTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAGACACGTGGGTCAGCAAAAGGCACCCTTTGTCTGGGTTTAAA  450

seq1  TCAATATGATGGCCCTCACAGTTTTACCAAGCCAATGCATAGACATTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGATGGCCCTCACAGTTTTACCAAGCCAATGCATAGACATTGTA  500

seq1  AAGCTCAAACAGAGAACATATTTGGAAGTGTTTGCAAATGTTTTAAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAAACAGAGAACATATTTGGAAGTGTTTGCAAATGTTTTAAGTGC  550

seq1  TTCCCGAAAGTAGCGTTGCCTTGACAATCCTGCCTGACCAGGAGAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGAAAGTAGCGTTGCCTTGACAATCCTGCCTGACCAGGAGAGAGGC  600

seq1  TTGCGCTTTTTTTTTTCTTCTCCCAAAAATGTTGAAATCATGACTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCTTTTTTTTTTCTTCTCCCAAAAATGTTGAAATCATGACTTGTTT  650

seq1  TTAGATCATAGAAGCGAAAATTATACAGGCGGTTACTGAAAAATAGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCATAGAAGCGAAAATTATACAGGCGGTTACTGAAAAATAGATAC  700

seq1  TGAAGGGTTTTCACTCCATCTAGTCTGTGGCTGGCAGCGGTGGTTAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTTTTCACTCCATCTAGTCTGTGGCTGGCAGCGGTGGTTAAGGG  750

seq1  GTTCCCATCAGCAGGTAGAAGGTCAGGGCGACAATGAGAAGCAGACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCATCAGCAGGTAGAAGGTCAGGGCGACAATGAGAAGCAGACAAAA  800

seq1  TGGCGAGGAG-AAGGTCTGGTAGGCAGCCGACGGCATGAAAATGTCTTCG  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAGGAGAAAGGTCTGGTAGGCAGCCGACGGCATGAAAATGTCTTCG  850

seq1  TACTTGTAAATACTGACAACGCGCTCTGAAGCCGGTGGAGAGTCTATGTC  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACTTGTAAATACTGACAACGCGCTCTGAAGCCCGTGGAGAGTCTATGTC  900

seq1  GTGACGAGTGATGGCGCCTTTAACATAGAAGTAGGGGAGGACCCATCAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGACGAGTGATGGCGCCTTTAACATAGAAGTAGGGGAGGACCCATC-AA  949

seq1  AGCAGCACAGAACTAAAGGGCAGAGACAAACACTAAATGCATA-TGTTTA  998
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  AGCAGCACAGAACTAAAGGGCAGAGAC-AACACTAAATGCATATTGTTTA  998

seq1  -TAAAATCTGGATTCAGGTACAGAGCCAGCATCAGAACTCTCTGTAACTG  1047
       |||| |||||| ||| |||||||| ||||||||| ||||||||| ||||
seq2  TTAAATTCTGGA-TCA-GTACAGAGTCAGCATCAG-ACTCTCTGT-ACTG  1044

seq1  CTCGTATGAAGGAGAGCACAGAAATCCTTTCTCTTTACACCCAAAGAGAG  1097
      |||||||| |||| ||||||||||||   | || |||||||| |||||||
seq2  CTCGTATG-AGGAAAGCACAGAAATC---TTTCCTTACACCC-AAGAGAG  1089

seq1  TTCTTATTGATCTGCAGTCACCCCGAGATCAGACAACCCACTG-ATCTCT  1146
      |||||| ||||||||||||| ||||||||||||| | |||||| || |||
seq2  TTCTTA-TGATCTGCAGTCA-CCCGAGATCAGAC-AGCCACTGAATTTCT  1136

seq1  CTGTCCTGTGGCAGCCAGTCTTAATATTTACTTGTGTGAACTGAATGGGT  1196
      |||| |||| |||| ||||| ||||  ||||||||||| |||||    | 
seq2  CTGT-CTGT-GCAG-CAGTC-TAAT-GTTACTTGTGTG-ACTGA---TGA  1177

seq1  TTCTACT  1203
      |||||||
seq2  TTCTACT  1184

seq1: chr4_57122687_57123767
seq2: B6Ng01-117L13.g_66_1134 (reverse)

seq1  GCAGGGACTCTACACAGTCTC-TGCTGGTCAGCCAAGAGGCTACTGTGCT  49
      ||||||| |||||||| |||| |||| |||||| |||| |||||  ||||
seq2  GCAGGGA-TCTACACA-TCTCTTGCT-GTCAGCAAAGA-GCTAC--TGCT  44

seq1  GACTCACCGGTTCCCAGTCATGTTTCTGATAAAGGAGGAAGACTGCTGGA  99
      || ||||||| ||||||||||| ||||||||||||| |||||||||||||
seq2  GA-TCACCGG-TCCCAGTCATG-TTCTGATAAAGGA-GAAGACTGCTGGA  90

seq1  CAGCTAGTGTCTTCACTTCATGCCCTAAACAAACTATGGAACTACACGAC  149
      ||||||||||| |||||||||||||| |||||||||| ||||||||||| 
seq2  CAGCTAGTGTC-TCACTTCATGCCCT-AACAAACTAT-GAACTACACGA-  136

seq1  CTTAGATAAGACACTACTGGCCATACCTTACTGCAACCTGCCCCGGCTTC  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTAGATAAGACACTACTGGCCATACC-TACTGCAACCTGCCCCGGCTTC  185

seq1  GAGGCAAACAGGTCAGATCCAGCTGTGGAACAAAGATGGTAG-AAGCCAA  248
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  GAGGCAAACAAGTCAGATCCAGCTGTGGAACAAAGATGGTAGAAAGCCAA  235

seq1  CTGTCCAAATCTCATTTCATCTCCG-AAGTAGAAAATGCTAGGCATCCCA  297
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGTCCAAATCTCATTTCATCTCCGAAAGTAGAAAATGCTAGGCATCCCA  285

seq1  GGTAGACTTCAAAGGAAGGCATGGGCTAAGCTGCGCATGCTCCCTGAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACTTCAAAGGAAGGCATGGGCTAAGCTGCGCATGCTCCCTGAATA  335

seq1  AGTGTACATGTTCTAGTTGTGAGCTAAACTGGGAAGGCACAGCGTCGAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACATGTTCTAGTTGTGAGCTAAACTGGGAAGGCACAGCGTCGAAA  385

seq1  CAATGTAAAGCGGCTGCAGGAGCCCTCTCAACGCACCTGTTCCACCCCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAAAGCGGCTGCAGGAGCCCTCTCAACGCACCTGTTCCACCCCCA  435

seq1  TCCCATGCTGTGTCCCTGCGTGCCTGTGTTCCCTTCCACCTCCACAGCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCTGTGTCCCTGCGTGCCTGTGTTCCCTTCCACCTCCACAGCAT  485

seq1  GTCACTTCACACCCAGACAACAGCAATGACCCCAAACGGTCCCGATACCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTCACACCCAGACAACAGCAATGACCCCAAACGGTCCCGATACCT  535

seq1  CTAGTTTCCTGTCTGTCCACTACCACCCTTCTCTGTGTCTCTGAAGGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTCCTGTCTGTCCACTACCACCCTTCTCTGTGTCTCTGAAGGGAA  585

seq1  CTGTCATTCAAGACAATCCTTCTCTGCACCGGAGAGCACTCACCAGAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTCAAGACAATCCTTCTCTGCACCGGAGAGCACTCACCAGAGAA  635

seq1  GCAAGTGTTTTGTGGATGCCCTGCAGCCTGATCCGTGACTTTGCAAAACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTTTTGTGGATGCCCTGCAGCCTGATCCGTGACTTTGCAAAACC  685

seq1  ATCCTTGCCTAAATCCTAACAAGTTCGGCCTCTGCTAGGGCCCTCTGAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGCCTAAATCCTAACAAGTTCGGCCTCTGCTAGGGCCCTCTGAGT  735

seq1  ACCCTGAATCCCAGCCAAGCTCTGAAGCCCCCAGATACGACGTCATACCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAATCCCAGCCAAGCTCTGAAGCCCCCAGATACGACGTCATACCA  785

seq1  CCTTCCATAGCAGCCCCTACCTCTACAGCTTGACTTGTGCCCTTTCCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATAGCAGCCCCTACCTCTACAGCTTGACTTGTGCCCTTTCCTTT  835

seq1  GCCTCCAATGCCCTTCTCCAAACCCTGTTCCTATCCTCACCTGCAGCAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAATGCCCTTCTCCAAACCCTGTTCCTATCCTCACCTGCAGCAAG  885

seq1  CTCAACTCTAGGCCCAGCACACTCCCCTGCTCGTCTTTTTGCTTCACTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTCTAGGCCCAGCACACTCCCCTGCTCGTCTTTTTGCTTCACTGC  935

seq1  CATCTGGCGTTCGGAGGTTGATGCAAGCATTAGCGCCAACCGATTAAGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCGTTCGGAGGTTGATGCAAGCATTAGCGCCAACCGATTAAGGA  985

seq1  GACTCTTCTGTCCCCCACAAAAGTTTTCAAACGACCCACTGTTTCAAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCTGTCCCCCACAAAAGTTTTCAAACGACCCACTGTTTCAAAAG  1035

seq1  TCTGATCTCCCCATTCTAATCCCGTGAGGAATTC  1081
      ||||||||||||||||||||||||||||||||||
seq2  TCTGATCTCCCCATTCTAATCCCGTGAGGAATTC  1069