BAC Information

Click to search

BAC

Clone NameB6Ng01-118E24
Chromosome4 (Build37)
Map Location 49,511,316 - 49,701,352
singlet/doubletdoublet
Overlap geneBaat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Upstream gene5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118E24.bB6Ng01-118E24.g
ACCDH922826DH922827
length1,1581,074
definitionDH922826|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E24, 5' end.DH922827|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,700,178 - 49,701,352)(49,511,316 - 49,512,062)
sequence
gaattcaggcctagagttgagtgtactgtttcctccaaagggatgttgca
ttcctgagggcttaaccacacagtacctcagagtgtggtctggtttgcat
ataagatacaaatccaccttgatatttagttacaatatagtgaggtaggc
cccaaacacactatgactagtatccttatcagaagacagtatccatgtga
aatagatacctacagaaagcctgggctgtgaggggatgagactggattcc
agcagctgccagccaagtccacttgccagctggtcacccttgcacagctg
tgacaagacacctgaggccatcatcttgtcacagggaaaactttacttgc
agtttgggttttttttttcagtccatcatgaggtacccctgttgttttgg
ggtctatggtaagctggcacattaagatggggaatgtgtctgtttgcttc
atgctgagatacaagcaggataaagagagtgagatctcaccattcccttt
aagaaccctgtcctcagtgaacagacctcccactgggccctacctctgga
atctttttactgtgtctcagtagttgggcctctgaagaaaagaagaatgg
ccctgcaggtttcagagggagcaagccagcttctttatttaggactccag
ttccagcactgaaagtcaaccctccctaaggcacctggatgacatcgaag
ttcccacgtctatagctgtgacacttgtctaccttgtgtctagcaggatt
gaacatatcttgcaaaaggaggaggaggagaagaagagaagaagaagaag
acgatgaagaaggagatgaagaagagaagatgagatgatgagaagagaag
agagaagaggagttgcctgttttattaccaaaaaaaaaaaagacacttca
cacctttgatggtatcttttcattttattatcatctctttcaatttgcta
caatgctcttatgttttaattcatttaggagtccataatctctctgaaca
gggatggctctggatgtcatcagtgctttgcacattgaaacatgatcaat
tgtatcgtaagaaaataactgattagcactgcctgatctcatgcctgggg
catggtggggcttcattccagtccacctgaattcactggctgtccttaca
cttctctg
gaattcactggtcttactatgttccccatcaacctgaagcagctggtctg
ctagaaagatggaatagccttttgaagatgcagttgcagcaccaattagg
tggtaatagcatggaaggctggggcagagttcttcagaaggcagtatatg
cctcgaatcagtattcgatatatggtacagtttcccccataaccaggatc
catgggtccaggaatcaaggggtggaaaagttccactcactatcactcct
agtgaccctctaggaaaacttttgcttcttgtacccataactctaggctc
tgcaggcctagaggttttggctccagaggagggagtgctcctaccaggag
ctacaacaaatatcccaatgaactgcaagctcagacttccccctggtcat
ttgggcttctaatgcccttaaaccaacaggctaaaaaagaaataacagtg
ttaggaggggtgatagatccagattaccatggggaaattggattaccttt
tcacaatggaggtaagcaagattatgtctggaatgtaggagatcccttag
ggcgtctcttagtactaccatgtcctgtgattaaagtcaatgggaaacta
caacagcctaatccaaaggacacagacccatcaggaatgatggtatgggt
ccatcctccaggaaaagagccaagacctgctgaggtgctggctgaaggtg
aaggaaatacagaatgggtggtagaggaaggtagttataaataccaatta
aggccacataacccgttgcagaaacaaggattgtaaagtaatatgaatgt
ccctgtcttattttgctaacgaatatatttgtctttcttccaatttcttt
aacatcaatttgtattaagttgagacactaaaaggatgtcccaagggaca
ttgccccattgtaaattcacaaatgtgtttgcgatgtatgagggatagta
tatcatgttaggcgtattccacaaccttgtatgttcatgtgaccatgaag
atatatttgtgtcaagttgacaaggggtggataattgtgctattcctggt
gtcaccttgcctataatttgaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49700178_49701352
seq2: B6Ng01-118E24.b_51_1208 (reverse)

seq1  CAGAGAAGTGAAGGGACAG-CAGTGACATCAGGTGGACTGGAATGAAGCC  49
      |||||||||| | |||||| ||||||  ||||||||||||||||||||||
seq2  CAGAGAAGTGTAAGGACAGCCAGTGAATTCAGGTGGACTGGAATGAAGCC  50

seq1  CCACCATGCCCCAGGCATTGGAGATCAGGCAGTGCTTATTCAGTTA-TTT  98
      ||||||||||||||||||  ||||||||||||||| || ||||||| |||
seq2  CCACCATGCCCCAGGCAT--GAGATCAGGCAGTGC-TAATCAGTTATTTT  97

seq1  CTTACGGATAC-ATTGATCATGTTTCAATGTGCAAAGCACTGATGACATC  147
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTAC-GATACAATTGATCATGTTTCAATGTGCAAAGCACTGATGACATC  146

seq1  CAGAGGCCATCCCTGTTCAGAGAGATTATGGACTCCTAAATGAATTAAAA  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGA-GCCATCCCTGTTCAGAGAGATTATGGACTCCTAAATGAATTAAAA  195

seq1  CATAAGAGCATTGTAGCAAATTGAAAGAGATGAT-ATAAAATG-AAAGAT  245
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  CATAAGAGCATTGTAGCAAATTGAAAGAGATGATAATAAAATGAAAAGAT  245

seq1  ACCATCAAAGGTGTGAAGTGTTCTTTTTTTTTTTTTTTTTGGTAAT-AAA  294
      ||||||||||||||||||||      | |||||||||||||||||| |||
seq2  ACCATCAAAGGTGTGAAGTG------TCTTTTTTTTTTTTGGTAATAAAA  289

seq1  CAGGCAACTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  344
      |||||||||||    ||||||   ||||| ||||| || || || || ||
seq2  CAGGCAACTCC----TCTTCT--CTCTTC-TCTTC-TCATCATC-TCATC  330

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  394
      ||| |||||||| ||| ||||||| || |||||||||||||| |||||||
seq2  TTC-TCTTCTTCATCTCCTTCTTCATCGTCTTCTTCTTCTTC-TCTTCTT  378

seq1  CTTCCTCCTCCTCCTTTTGCAAGATATGTTCAATCCTGCTAGACACAAGG  444
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TCCTCCTCCTCCTTTTGCAAGATATGTTCAATCCTGCTAGACACAAGG  427

seq1  TAGACAAGTGTCACAGCTATAGACGTGGGAACTTCGATGTCATCCAGGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGTGTCACAGCTATAGACGTGGGAACTTCGATGTCATCCAGGTG  477

seq1  CCTTAGGGAGGGTTGACTTTCAGTGCTGGAACTGGAGTCCTAAATAAAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGGAGGGTTGACTTTCAGTGCTGGAACTGGAGTCCTAAATAAAGA  527

seq1  AGCTGGCTTGCTCCCTCTGAAACCTGCAGGGCCATTCTTCTTTTCTTCAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTTGCTCCCTCTGAAACCTGCAGGGCCATTCTTCTTTTCTTCAG  577

seq1  AGGCCCAACTACTGAGACACAGTAAAAAGATTCCAGAGGTAGGGCCCAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAACTACTGAGACACAGTAAAAAGATTCCAGAGGTAGGGCCCAGT  627

seq1  GGGAGGTCTGTTCACTGAGGACAGGGTTCTTAAAGGGAATGGTGAGATCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTCTGTTCACTGAGGACAGGGTTCTTAAAGGGAATGGTGAGATCT  677

seq1  CACTCTCTTTATCCTGCTTGTATCTCAGCATGAAGCAAACAGACACATTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTTTATCCTGCTTGTATCTCAGCATGAAGCAAACAGACACATTC  727

seq1  CCCATCTTAATGTGCCAGCTTACCATAGACCCCAAAACAACAGGGGTACC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTAATGTGCCAGCTTACCATAGACCCCAAAACAACAGGGGTACC  777

seq1  TCATGATGGACTGAAAAAAAAAACCCAAACTGCAAGTAAAGTTTTCCCTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGGACTGAAAAAAAAAACCCAAACTGCAAGTAAAGTTTTCCCTG  827

seq1  TGACAAGATGATGGCCTCAGGTGTCTTGTCACAGCTGTGCAAGGGTGACC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGATGATGGCCTCAGGTGTCTTGTCACAGCTGTGCAAGGGTGACC  877

seq1  AGCTGGCAAGTGGACTTGGCTGGCAGCTGCTGGAATCCAGTCTCATCCCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCAAGTGGACTTGGCTGGCAGCTGCTGGAATCCAGTCTCATCCCC  927

seq1  TCACAGCCCAGGCTTTCTGTAGGTATCTATTTCACATGGATACTGTCTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCCAGGCTTTCTGTAGGTATCTATTTCACATGGATACTGTCTTC  977

seq1  TGATAAGGATACTAGTCATAGTGTGTTTGGGGCCTACCTCACTATATTGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGGATACTAGTCATAGTGTGTTTGGGGCCTACCTCACTATATTGT  1027

seq1  AACTAAATATCAAGGTGGATTTGTATCTTATATGCAAACCAGACCACACT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATATCAAGGTGGATTTGTATCTTATATGCAAACCAGACCACACT  1077

seq1  CTGAGGTACTGTGTGGTTAAGCCCTCAGGAATGCAACATCCCTTTGGAGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTACTGTGTGGTTAAGCCCTCAGGAATGCAACATCCCTTTGGAGG  1127

seq1  AAACAGTACACTCAACTCTAGGCCTGAATTC  1175
      |||||||||||||||||||||||||||||||
seq2  AAACAGTACACTCAACTCTAGGCCTGAATTC  1158

seq1: chr4_49511316_49512062
seq2: B6Ng01-118E24.g_402_1140

seq1  TGCTCCTACCAGGAGCTACAACAAATATCCCAATGAACTGCAAGCTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTACCAGGAGCTACAACAAATATCCCAATGAACTGCAAGCTCAGA  50

seq1  CTTCCCCCTGGTCATTTGGGCTTCTAATGCCCTTAAACCAACAGGCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCTGGTCATTTGGGCTTCTAATGCCCTTAAACCAACAGGCTAAA  100

seq1  AAAGAAATAACAGTGTTAGGAGGGGTGATAGATCCAGATTACCATGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAACAGTGTTAGGAGGGGTGATAGATCCAGATTACCATGGGGA  150

seq1  AATTGGATTACCTTTTCACAATGGAGGTAAGCAAGATTATGTCTGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATTACCTTTTCACAATGGAGGTAAGCAAGATTATGTCTGGAATG  200

seq1  TAGGAGATCCCTTAGGGCGTCTCTTAGTACTACCATGTCCTGTGATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATCCCTTAGGGCGTCTCTTAGTACTACCATGTCCTGTGATTAAA  250

seq1  GTCAATGGGAAACTACAACAGCCTAATCCAAAGGACACAGACCCATCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGGGAAACTACAACAGCCTAATCCAAAGGACACAGACCCATCAGG  300

seq1  AATGATGGTATGGGTCCATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGTATGGGTCCATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGG  350

seq1  TGCTGGCTGAAGGTGAAGGAAATACAGAATGGGTGGTAGAGGAAGGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTGAAGGTGAAGGAAATACAGAATGGGTGGTAGAGGAAGGTAGT  400

seq1  TATAAATACCAATTAAGGCCACATAACCCGTTGCAGAAACAAGGATTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATACCAATTAAGGCCACATAACCCGTTGCAGAAACAAGGATTGTA  450

seq1  AAGTAATATGAATGTCCCTGTCTTATTTTGCTAACGAATATATTTGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATATGAATGTCCCTGTCTTATTTTGCTAACGAATATATTTGTCTT  500

seq1  TCTTCCAATTTCTTTAACATCAATTTGTATTTAAGTTGAGACACTAAAAG  550
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTCCAATTTCTTTAACATCAATTTGTA-TTAAGTTGAGACACTAAAAG  549

seq1  GATGTTCCCAAGGGACATTGCCCCATTGTAAATTCACAAATGTGTTTGCG  600
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATG-TCCCAAGGGACATTGCCCCATTGTAAATTCACAAATGTGTTTGCG  598

seq1  ATTGTATGAGGGATAGTTATATCATGTTAGGCGTATT-CACAACCTTGTT  649
      | |||||||||||||| |||||||||||||||||||| |||||||||| |
seq2  A-TGTATGAGGGATAG-TATATCATGTTAGGCGTATTCCACAACCTTG-T  645

seq1  ATTGTTTCATGTGAACATG-AGATATTATTTGTGTCAAGTTGACAAGGGG  698
      ||   ||||||||| |||| ||||| ||||||||||||||||||||||||
seq2  AT--GTTCATGTGACCATGAAGATA-TATTTGTGTCAAGTTGACAAGGGG  692

seq1  TGGATAATAGTGGCTATTCCTGGTTGTCAACTTGACTATATTTGGAATG  747
      |||||||| || ||||||||||| ||||| |||| ||||| || |||||
seq2  TGGATAATTGT-GCTATTCCTGG-TGTCACCTTGCCTATAATTTGAATG  739