BAC Information

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BAC

Clone NameB6Ng01-118N02
Chromosome4 (Build37)
Map Location 52,323,546 - 52,457,992
singlet/doubletdoublet
Overlap geneLOC100041038, LOC666724, Smc2
Upstream geneLOC384015, LOC100041026
Downstream geneLOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118N02.bB6Ng01-118N02.g
ACCDH923199DH923200
length1,0191,114
definitionDH923199|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N02, 5' end.DH923200|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,323,546 - 52,324,570)(52,456,867 - 52,457,992)
sequence
gaattcacttcacattgatatttagagcttactaaaagtaaaatgggtaa
aaaaggtacacacagatcctctgactcttccaactcctcaatgcctgcat
ctgctattaacagagtacccatggctatttgggaaaaaaatgattttctg
aacaggtagttctgctacaaaataaaagtgtattgttaaaaagaaataca
aaacattttctgtgatgaagagggaatgtcagctggacacttgcagaatc
acaataaaaatgtttttcaccaggaatttcaataatagtgtttttatatc
caagagtgtaggtgtaaaatgtaggcatctaggacaaaatagattctcag
gataaatgcaggtcataatatgcagagatttctttagaggcagcacaaag
tgttaggatttctgcccccaatggcaagttattatagttttatacggaag
caatactatgcaatttttcatgttataaataagatctttcttgcttcact
ctaaaaataaacctagaaagaaagtggtacagatggggagatttttttca
aaaaagagaaaatgatagataatgagagaggagaggttgaggtcatctgt
gtcgtcccttctcaagtattctacagatttttgacttgtctgcttgcata
aacagcacccaccgtaaacatcaaaataaaaataggactaatatatgaca
cagctagacccaaaggaccctatatccagctgcagagaaacttgctcatc
catgtttatggctacacttttcataatagccaggaaatagaaccaactta
gaagtccatcaactgtttgagaatgaaatgtagtacatacatgtaatgat
attttattcagatattaatcaaaatcaaactttcggaaaactgatggaat
tggaaataattcatcagaagtgacttgggctcagaaagacaaattctatg
ttctccctaatacacaagccctagtttaatgtatatatggtttattggag
tttagtggagagagagaga
gaattctgccttgatctagccaaataaatataatcagaagattgataaaa
taaaggagaaaacccatttacaaactaagatgacaagtgaaatttaacag
aatttataaaattagtataaattagaattagttttacacttatagttaat
tattatacaatgaattatatagttaacataattatataaattccatttct
aaaaatcgaagtaataaaattagtaaaaacaaaactgagaagatgaaaac
attgataaaaaaaaaaaaattgctgggcagtggtggcgcatgcctttaat
cccagcacttgggaggcagaggcaggcagatttctgagttcaaggccagc
ctggtctacagaatgggttccaggacagccagggctacacagagggtttc
tcaaaacaacaacaacaacaacaaaaaaaaacaaaaacaaaaaacccaaa
aaaaaacaaaaaagaaaaaaattacggaccaatgaaaggcccttaataac
tttgaaagaaatagtagtgatcaagctaaataatgacacatgtcccgtgg
tttcaagtcctctgatgcacacacgctgcagtgaaagcctgagagccaga
ggagtgtctaaatgaagcaacactagttttgttcatatctgttttcacta
gccctttttgtcactctacatttgaggccatataactcaaagaaaattgt
atgtgtgtgaggggaggcaacagagagggtgctcatacttggtgtgatta
ggcaagtgaaggaactggaaataagttcagtgagagccctggtagggttc
cacttagaaaatatttagacctgcaaacaacttaaatattgaaatattaa
aaaaacagatttcatcttggaagtttcaagtgaaccaagactaactgcat
aaaactttaagttcacagacttctgctgaatttagattaggtttcatttg
ggccagaccctgagtcattgagagcttccctcagatcactcagaattttc
tctactttctgggacccagcttttactataccccttctgatcttctctag
cattctgatgatgtatacgtagccctgctacctgtacgacgcctcagctc
tgagctcaaacgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52323546_52324570
seq2: B6Ng01-118N02.b_46_1064

seq1  GAATTCACTTCACATTGATATTTAGAGCTTACTAAAAGTAAAATGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCACATTGATATTTAGAGCTTACTAAAAGTAAAATGGGTAA  50

seq1  AAAAGGTACACACAGATCCTCTGACTCTTCCAACTCCTCAATGCCTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTACACACAGATCCTCTGACTCTTCCAACTCCTCAATGCCTGCAT  100

seq1  CTGCTATTAACAGAGTACCCATGGCTATTTGGGAAAAAAATGATTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATTAACAGAGTACCCATGGCTATTTGGGAAAAAAATGATTTTCTG  150

seq1  AACAGGTAGTTCTGCTACAAAATAAAAGTGTATTGTTAAAAAGAAATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTAGTTCTGCTACAAAATAAAAGTGTATTGTTAAAAAGAAATACA  200

seq1  AAACATTTTCTGTGATGAAGAGGGAATGTCAGCTGGACACTTGCAGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTCTGTGATGAAGAGGGAATGTCAGCTGGACACTTGCAGAATC  250

seq1  ACAATAAAAATGTTTTTCACCAGGAATTTCAATAATAGTGTTTTTATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAAATGTTTTTCACCAGGAATTTCAATAATAGTGTTTTTATATC  300

seq1  CAAGAGTGTAGGTGTAAAATGTAGGCATCTAGGACAAAATAGATTCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTGTAGGTGTAAAATGTAGGCATCTAGGACAAAATAGATTCTCAG  350

seq1  GATAAATGCAGGTCATAATATGCAGAGATTTCTTTAGAGGCAGCACAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGCAGGTCATAATATGCAGAGATTTCTTTAGAGGCAGCACAAAG  400

seq1  TGTTAGGATTTCTGCCCCCAATGGCAAGTTATTATAGTTTTATACGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGATTTCTGCCCCCAATGGCAAGTTATTATAGTTTTATACGGAAG  450

seq1  CAATACTATGCAATTTTTCATGTTATAAATAAGATCTTTCTTGCTTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTATGCAATTTTTCATGTTATAAATAAGATCTTTCTTGCTTCACT  500

seq1  CTAAAAATAAACCTAGAAAGAAAGTGGTACAGATGGGGAGATTTTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATAAACCTAGAAAGAAAGTGGTACAGATGGGGAGATTTTTTTCA  550

seq1  AAAAAGAGAAAATGATAGATAATGAGAGAGGAGAGGTTGAGGTCATCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGAAAATGATAGATAATGAGAGAGGAGAGGTTGAGGTCATCTGT  600

seq1  GTCGTCCCTTCTCAAGTATTCTACAGATTTTTGACTTGTCTGCTTGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCCCTTCTCAAGTATTCTACAGATTTTTGACTTGTCTGCTTGCATA  650

seq1  AACAGCACCCACCGTAAACATCAAAATAAAAATAGGACTAATATATGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACCCACCGTAAACATCAAAATAAAAATAGGACTAATATATGACA  700

seq1  CAGCTAGACCCAAAGGACCCTATATCCAGCTGCAGAGAAACTTGCTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGACCCAAAGGACCCTATATCCAGCTGCAGAGAAACTTGCTCATC  750

seq1  CATGTTTATGGCTACACTTTTCATAATAGCCAGGAAATAGAACCAACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTATGGCTACACTTTTCATAATAGCCAGGAAATAGAACCAACTTA  800

seq1  GAAGTCCATCAACTGTTTGAGAATGAAATGTAGTACATACATGTAATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCATCAACTGTTTGAGAATGAAATGTAGTACATACATGTAATGAT  850

seq1  ATTTTATTCAGATATTAATCAAAATCAAACTTTCAGGAAAACTGATGGAA  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTTATTCAGATATTAATCAAAATCAAACTTTC-GGAAAACTGATGGAA  899

seq1  TTGGAAATAATTCATCAGAAGTGACTTGGGCTCAGAAAGACAAATTCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATAATTCATCAGAAGTGACTTGGGCTCAGAAAGACAAATTCTAT  949

seq1  GTTCTCCCTAATACACAAGCCCTAGTTTTAATTGTTATATATGGGTTTAT  1000
      ||||||||||||||||||||||||| ||||||   ||||||| |||||||
seq2  GTTCTCCCTAATACACAAGCCCTAG-TTTAAT--GTATATAT-GGTTTAT  995

seq1  GTGAGGTTTAGTGGAGAGAGAGAGA  1025
       ||  ||||||||||||||||||||
seq2  -TGGAGTTTAGTGGAGAGAGAGAGA  1019

seq1: chr4_52456867_52457992
seq2: B6Ng01-118N02.g_68_1181 (reverse)

seq1  GGCGTTTGAGCTCAGAGCTGAGGCGTCTGTTACAGTTAGCCAGGGCTACC  50
      |||||||||||||||||||||||||||   ||||| ||| |||||||| |
seq2  GGCGTTTGAGCTCAGAGCTGAGGCGTC--GTACAGGTAG-CAGGGCTA-C  46

seq1  GTATACATCATCAGGATGCTAGAGAAGATCAGAAGGGGTATAGTAAAAGC  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTATACATCATCAGAATGCTAGAGAAGATCAGAAGGGGTATAGTAAAAGC  96

seq1  TTGGGTTCCCAGAAAGTAGAGAAAATTCTGAGTGATCTGAGGGAAGCTCT  150
      |  || ||||||||||||||||||||||||||||||||||||||||||||
seq2  T--GGGTCCCAGAAAGTAGAGAAAATTCTGAGTGATCTGAGGGAAGCTCT  144

seq1  CAATGGACTCAGGGGTCTGGGCCCAAATGAAAACCTAATCTTAAATTCAG  200
      |||| |||||| |||||| |||||||||| |||||||||| |||||||||
seq2  CAAT-GACTCA-GGGTCT-GGCCCAAATG-AAACCTAATC-TAAATTCAG  189

seq1  CAGAAGTCTGTGAACTTAAAGTTTTATGCAGTTAGTCTTGGTTCACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCTGTGAACTTAAAGTTTTATGCAGTTAGTCTTGGTTCACTTGA  239

seq1  AACTTCCAAGATGAAATCTGTTTTTTTTAATATTTCAATATTTAAGTTGT  300
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AACTTCCAAGATGAAATCTG-TTTTTTTAATATTTCAATATTTAAGTTGT  288

seq1  TTGCAGGTCTAAATATTTTCTAAGTGGAACCCTACCAGGGCTCTCACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTCTAAATATTTTCTAAGTGGAACCCTACCAGGGCTCTCACTGA  338

seq1  ACTTATTTCCAGTTCCTTCACTTGCCTAATCACACCAAGTATGAGCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTCCAGTTCCTTCACTTGCCTAATCACACCAAGTATGAGCACCC  388

seq1  TCTCTGTTGCCTCCCCTCACACACATACAATTTTCTTTGAGTTATATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTGCCTCCCCTCACACACATACAATTTTCTTTGAGTTATATGGC  438

seq1  CTCAAATGTAGAGTGACAAAAAGGGCTAGTGAAAACAGATATGAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATGTAGAGTGACAAAAAGGGCTAGTGAAAACAGATATGAACAAAA  488

seq1  CTAGTGTTGCTTCATTTAGACACTCCTCTGGCTCTCAGGCTTTCACTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTTGCTTCATTTAGACACTCCTCTGGCTCTCAGGCTTTCACTGCA  538

seq1  GCGTGTGTGCATCAGAGGACTTGAAACCACGGGACATGTGTCATTATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTGTGCATCAGAGGACTTGAAACCACGGGACATGTGTCATTATTTA  588

seq1  GCTTGATCACTACTATTTCTTTCAAAGTTATTAAGGGCCTTTCATTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATCACTACTATTTCTTTCAAAGTTATTAAGGGCCTTTCATTGGTC  638

seq1  CGTAATTTTTTTCTTTTTTGTTTTTTTTTGGGTTTTTTGTTTTTGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATTTTTTTCTTTTTTGTTTTTTTTTGGGTTTTTTGTTTTTGTTTTT  688

seq1  TTTTGTTGTTGTTGTTGTTGTTTTGAGAAACCCTCTGTGTAGCCCTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTGTTGTTGTTGTTTTGAGAAACCCTCTGTGTAGCCCTGGCT  738

seq1  GTCCTGGAACCCATTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACCCATTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTG  788

seq1  CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGC  838

seq1  CCAGCAATTTTTTTTTTTTTATCAATGTTTTCATCTTCTCAGTTTTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATTTTTTTTTTTTTATCAATGTTTTCATCTTCTCAGTTTTGTTT  888

seq1  TTACTAATTTTATTACTTCGATTTTTAGAAATGGAATTTATATAATTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATTTTATTACTTCGATTTTTAGAAATGGAATTTATATAATTATG  938

seq1  TTAACTATATAATTCATTGTATAATAATTAACTATAAGTGTAAAACTAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATATAATTCATTGTATAATAATTAACTATAAGTGTAAAACTAAT  988

seq1  TCTAATTTATACTAATTTTATAAATTCTGTTAAATTTCACTTGTCATCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTATACTAATTTTATAAATTCTGTTAAATTTCACTTGTCATCTT  1038

seq1  AGTTTGTAAATGGGTTTTCTCCTTTATTTTATCAATCTTCTGATTATATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTAAATGGGTTTTCTCCTTTATTTTATCAATCTTCTGATTATATT  1088

seq1  TATTTGGCTAGATCAAGGCAGAATTC  1126
      ||||||||||||||||||||||||||
seq2  TATTTGGCTAGATCAAGGCAGAATTC  1114