BAC Information

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BAC

Clone NameB6Ng01-125E20
Chromosome4 (Build37)
Map Location 134,824,000 - 134,958,128
singlet/doubletdoublet
Overlap geneClic4, LOC676072, Srrm1, A330049M08Rik
Upstream genePdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3
Downstream geneLOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125E20.bB6Ng01-125E20.g
ACCDH927977DH927978
length1,2151,034
definitionDH927977|Mus musculus domesticus DNA, BAC clone: B6Ng01-125E20, 5' end.DH927978|Mus musculus domesticus DNA, BAC clone: B6Ng01-125E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,956,896 - 134,958,128)(134,824,000 - 134,825,048)
sequence
gaattcatttcaaaagccatcagcctggaaaactggctcccacatgcacg
ctctagttctagtgtaatcactgtgtacttagttgtctctgagccagtgt
tggctccccactgagactacactttaatcccgtacaacaacgtgtgcctg
ttccccagcaaccctcttcaaagccataaacggcagaccacggctttgag
agaagagactgggcaatcctaactgagataaaaccaacttccagggccag
gctggggctgaggctcagcggggagagtgttctcttaatgttcacaaagt
cctgggctctatccctagcaccaaacagtgagactgtgtctcaaaacgga
ataccccagtcagtgcccaaggatagggcttccctgagtcatcctgtgct
aacaaacttggaaggagcctgatgcatttgggggctttcccctgaaaagg
gacatctctcccctccccaaattccttttctcctcttcctcttcttcctc
ctccttttttgtttgtttggagtcttttgttttgttttgagactgggtct
tattatgtagcccaggattgcctaaaattcactatgcagaccaaggcagc
ctgggtctctccttctgcctcaggctctgtagttctcaatactgaataca
gtcatcaagcaccacaccaatactggactcaatatgctgtgctgcttggc
tggagctcacaatgtagatcaggctgccccaaactcacagagatccacct
gttctgtcaccaacaagtacttctactcgacaggcgcacgaatcagaggc
ttattttccacccctctagcacagactctgggtgtatactcccttggcca
gaagaagggtcaagattctgatggtgtggcccagtggtgagcacctgcct
agttacctagtgtgcacaaggccttggggttctaggcccagaagcctcga
aagcagggacatgaattgtagcatcagtggccaggctaccataacctgtc
ttagaatagcatcagtcttttgctgcctctcagataagccccaacactct
tactaacacgaccgcagacacacgacaagcaacgaccgtaccacagccac
tttcagctagctttctcttatcctgacacaggcttcagtgaatctactga
acaagaggcttagaacaagattgaacttcctttcacctttcggatcttaa
gggagaacccatcct
gaattcaccctgcaggttaacgtcctataaaaacccctcccaattccaga
agcttgggactactgcagatagtgataacctaattcaaacgatagtacat
aaagtttaaattatgacccataaaactaagtccagcagagagattacctc
ctacttagataagaaatacaccacttcatacagatgcagccaaagtggag
aaacagtggtgtcaacacaaactgggccataaaagcaaaacaaaactcca
actcctgattactctctatctgtgtgtaatccctgcactccgggggctga
ggagagacaactgccacaaatttaaggttagcctgggctacagagtaagg
ccctgtctcaaatgactatataaaccaaaagagggtgacctcaggcacac
aggtcagtaatcacctctctgctcctttcatttgtgcttcctgagttaat
ttttattcacctttacaaaagcagaaatcttggaccctaactacagatac
agccaagaagatacattggtagaaaatgtggcagatacacaaaaagatca
gaaatactaaactatgaaggaaaagaggttaaataggtctggaaagatgg
ctcagcggttaagagcactgactgctcttccagaagtcttgagttcaatt
cccagcaaccacatagtggctcacgaccatctgtaatgggatctgatgct
cgctctcttctggtgtggtgtgttgttcaaggagaacagggtgttgcatg
cctgtaatgtcagcactcaagaggctgaggcagaactgctctaagttaga
ggacagcctgggctatgtagggagtgcaaagatagcttagataacaaagg
gaaaaccagtccaaactaaaccagaaaaaaaaaaaaccaaaaaaaaacca
gacaaagagggaggtgtttgtttccattcaaaggacagacagaacattat
gctacagcaacagcacatgctgggaagatggcaaggtcgagtgctctctc
tcactgctgtagcagcatgcacagacctgtagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134956896_134958128
seq2: B6Ng01-125E20.b_44_1258 (reverse)

seq1  AGGATGGGGTTTCTCCCTTAAAGAAGCCGGGAGGGTGAGAAGGAAGGTCA  50
      ||||||||  ||||||||| ||||   | | | ||||| ||||||| |||
seq2  AGGATGGG--TTCTCCCTT-AAGA--TCCGAAAGGTGA-AAGGAAGTTCA  44

seq1  CACTCTGGTCT-AGCC-CTTGTTCCAGTAGA-TCACTGGAGCTGGTGCCA  97
        || || ||| |||| |||||| ||||||| |||||| |||  ||| ||
seq2  ATCT-TGTTCTAAGCCTCTTGTT-CAGTAGATTCACTGAAGCCTGTGTCA  92

seq1  GGGATAGAGAAAGCTAGCTGGAAAGTGG-TGTGGTATGTGTGTGTGTGTG  146
      ||   |||||||||||||| |||||||| ||||||| |     ||   ||
seq2  GGATAAGAGAAAGCTAGCT-GAAAGTGGCTGTGGTACG-----GTCGTTG  136

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGGAGTGGTTGGGGCTTATC  196
        |||  |||||| || |   ||||  |||| |||| |||||||||||||
seq2  CTTGT-CGTGTGTCTGCGGTCGTGTTAGTAA-GAGT-GTTGGGGCTTATC  183

seq1  TGGAGGAAGGCAGGCAGAGGACTGATGCTATTCTAAGACAGGTTATGGTA  246
      | |||  ||||| ||| | |||||||||||||||||||||||||||||||
seq2  T-GAG--AGGCA-GCAAAAGACTGATGCTATTCTAAGACAGGTTATGGTA  229

seq1  GCCTGGCCACTGATGCTACAATTCATGTCCCCTGCTTTCGAGGCTTCTGG  296
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCTGGCCACTGATGCTACAATTCATGT-CCCTGCTTTCGAGGCTTCTGG  278

seq1  GCCTAGAACCCCAAGGCCTTGTGCACACTAGGTAACTAGGCAGGTGCTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAACCCCAAGGCCTTGTGCACACTAGGTAACTAGGCAGGTGCTCA  328

seq1  CCACTGGGCCACACCATCAGAATCTTGACCCTTCTTCTGGCCAAGGGAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGCCACACCATCAGAATCTTGACCCTTCTTCTGGCCAAGGGAGT  378

seq1  ATACACCCAGAGTCTGTGCTAGAGGGGTGGAAAATAAGCCTCTGATTCGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCCAGAGTCTGTGCTAGAGGGGTGGAAAATAAGCCTCTGATTCGT  428

seq1  GCGCCTGTCGAGTAGAAGTACTTGTTGGTGACAGAACAGGTGGATCTCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTGTCGAGTAGAAGTACTTGTTGGTGACAGAACAGGTGGATCTCTG  478

seq1  TGAGTTTGGGGCAGCCTGATCTACATTGTGAGCTCCAGCCAAGCAGCACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGGGGCAGCCTGATCTACATTGTGAGCTCCAGCCAAGCAGCACA  528

seq1  GCATATTGAGTCCAGTATTGGTGTGGTGCTTGATGACTGTATTCAGTATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTGAGTCCAGTATTGGTGTGGTGCTTGATGACTGTATTCAGTATT  578

seq1  GAGAACTACAGAGCCTGAGGCAGAAGGAGAGACCCAGGCTGCCTTGGTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTACAGAGCCTGAGGCAGAAGGAGAGACCCAGGCTGCCTTGGTCT  628

seq1  GCATAGTGAATTTTAGGCAATCCTGGGCTACATAATAAGACCCAGTCTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTGAATTTTAGGCAATCCTGGGCTACATAATAAGACCCAGTCTCA  678

seq1  AAACAAAACAAAAGACTCCAAACAAACAAAAAAGGAGGAGGAAGAAGAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAAGACTCCAAACAAACAAAAAAGGAGGAGGAAGAAGAGG  728

seq1  AAGAGGAGAAAAGGAATTTGGGGAGGGGAGAGATGTCCCTTTTCAGGGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGAAAAGGAATTTGGGGAGGGGAGAGATGTCCCTTTTCAGGGGA  778

seq1  AAGCCCCCAAATGCATCAGGCTCCTTCCAAGTTTGTTAGCACAGGATGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCCAAATGCATCAGGCTCCTTCCAAGTTTGTTAGCACAGGATGAC  828

seq1  TCAGGGAAGCCCTATCCTTGGGCACTGACTGGGGTATTCCGTTTTGAGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAAGCCCTATCCTTGGGCACTGACTGGGGTATTCCGTTTTGAGAC  878

seq1  ACAGTCTCACTGTTTGGTGCTAGGGATAGAGCCCAGGACTTTGTGAACAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCACTGTTTGGTGCTAGGGATAGAGCCCAGGACTTTGTGAACAT  928

seq1  TAAGAGAACACTCTCCCCGCTGAGCCTCAGCCCCAGCCTGGCCCTGGAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAACACTCTCCCCGCTGAGCCTCAGCCCCAGCCTGGCCCTGGAAG  978

seq1  TTGGTTTTATCTCAGTTAGGATTGCCCAGTCTCTTCTCTCAAAGCCGTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTATCTCAGTTAGGATTGCCCAGTCTCTTCTCTCAAAGCCGTGG  1028

seq1  TCTGCCGTTTATGGCTTTGAAGAGGGTTGCTGGGGAACAGGCACACGTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCGTTTATGGCTTTGAAGAGGGTTGCTGGGGAACAGGCACACGTTG  1078

seq1  TTGTACGGGATTAAAGTGTAGTCTCAGTGGGGAGCCAACACTGGCTCAGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACGGGATTAAAGTGTAGTCTCAGTGGGGAGCCAACACTGGCTCAGA  1128

seq1  GACAACTAAGTACACAGTGATTACACTAGAACTAGAGCGTGCATGTGGGA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTAAGTACACAGTGATTACACTAGAACTAGAGCGTGCATGTGGGA  1178

seq1  GCCAGTTTTCCAGGCTGATGGCTTTTGAAATGAATTC  1233
      |||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTTTCCAGGCTGATGGCTTTTGAAATGAATTC  1215

seq1: chr4_134824000_134825048
seq2: B6Ng01-125E20.g_68_1101

seq1  GAATTCACCCTGCAGGTTAACGTCCTATAAAAACCCCTCCCAATTCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTGCAGGTTAACGTCCTATAAAAACCCCTCCCAATTCCAGA  50

seq1  AGCTTGGGACTACTGCAGATAGTGATAACCTAATTCAAACGATAGTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGGACTACTGCAGATAGTGATAACCTAATTCAAACGATAGTACAT  100

seq1  AAAGTTTAAATTATGACCCATAAAACTAAGTCCAGCAGAGAGATTACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAAATTATGACCCATAAAACTAAGTCCAGCAGAGAGATTACCTC  150

seq1  CTACTTAGATAAGAAATACACCACTTCATACAGATGCAGCCAAAGTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGATAAGAAATACACCACTTCATACAGATGCAGCCAAAGTGGAG  200

seq1  AAACAGTGGTGTCAACACAAACTGGGCCATAAAAGCAAAACAAAACTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGGTGTCAACACAAACTGGGCCATAAAAGCAAAACAAAACTCCA  250

seq1  ACTCCTGATTACTCTCTATCTGTGTGTAATCCCTGCACTCCGGGGGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGATTACTCTCTATCTGTGTGTAATCCCTGCACTCCGGGGGCTGA  300

seq1  GGAGAGACAACTGCCACAAATTTAAGGTTAGCCTGGGCTACAGAGTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGACAACTGCCACAAATTTAAGGTTAGCCTGGGCTACAGAGTAAGG  350

seq1  CCCTGTCTCAAATGACTATATAAACCAAAAGAGGGTGACCTCAGGCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCAAATGACTATATAAACCAAAAGAGGGTGACCTCAGGCACAC  400

seq1  AGGTCAGTAATCACCTCTCTGCTCCTTTCATTTGTGCTTCCTGAGTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTAATCACCTCTCTGCTCCTTTCATTTGTGCTTCCTGAGTTAAT  450

seq1  TTTTATTCACCTTTACAAAAGCAGAAATCTTGGACCCTAACTACAGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCACCTTTACAAAAGCAGAAATCTTGGACCCTAACTACAGATAC  500

seq1  AGCCAAGAAGATACATTGGTAGAAAATGTGGCAGATACACAAAAAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAAGATACATTGGTAGAAAATGTGGCAGATACACAAAAAGATCA  550

seq1  GAAATACTAAACTATGAAGGAAAAGAGGTTAAATAGGTCTGGAAAGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTAAACTATGAAGGAAAAGAGGTTAAATAGGTCTGGAAAGATGG  600

seq1  CTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAAGTCTTGAGTTCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAAGTCTTGAGTTCAATT  650

seq1  CCCAGCAACCACATAGTGGCTCACGACCATCTGTAATGGGATCTGATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCACATAGTGGCTCACGACCATCTGTAATGGGATCTGATGCT  700

seq1  CGCTCTCTTCTGGTGTGGTGTGTTGTTCAAGGAGAACAGGGTGTTGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTCTTCTGGTGTGGTGTGTTGTTCAAGGAGAACAGGGTGTTGCATG  750

seq1  CCTGTAATGTCAGCACTCAAGAGGCTGAGGCAGAACTGCTCTAAGTTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATGTCAGCACTCAAGAGGCTGAGGCAGAACTGCTCTAAGTTAGA  800

seq1  GGACAGCCTGGGCTATGTAGGGAGTGCAAGGATAGCTTAGAT-ACAAAGG  849
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  GGACAGCCTGGGCTATGTAGGGAGTGCAAAGATAGCTTAGATAACAAAGG  850

seq1  GAAAACCAGTCCAAAAACAAAAACAAGAAAAAAAAAAAAAAACAAAAAAA  899
      ||||||||||||  |||| ||| |    | ||||||||||||| ||||||
seq2  GAAAACCAGTCC--AAACTAAACC----AGAAAAAAAAAAAACCAAAAAA  894

seq1  AAACAAAGACAAAAAGGAGGGAGGTG-TTGTTTCCAATTCAAAGGACAGA  948
      ||||  |||||||   |||||||||| |||||||| ||||||||||||||
seq2  AAAC-CAGACAAA---GAGGGAGGTGTTTGTTTCC-ATTCAAAGGACAGA  939

seq1  CAAGACA-TATGCTAACAGCAACAGCAACAATGCTGGAGAGATGGCCAGG  997
      ||  ||| |||||| ||||||||||||   |||||||  ||||||| |  
seq2  CAGAACATTATGCT-ACAGCAACAGCA--CATGCTGGGAAGATGGCAA--  984

seq1  GGTCGAGTG--CTCGCTCACTGCTGGTAGCAGCCATGCAGCAGGACCTGT  1045
      |||||||||  ||| ||||||||| ||||||| |||||| || |||||||
seq2  GGTCGAGTGCTCTCTCTCACTGCT-GTAGCAG-CATGCA-CA-GACCTGT  1030

seq1  AGAG  1049
      ||||
seq2  AGAG  1034