BAC Information

Click to search

BAC

Clone NameB6Ng01-125O03
Chromosome4 (Build37)4 (Build37)
Map Location 30,584,657 - 30,584,76747,317,488 - 47,317,940
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665185
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125O03.bB6Ng01-125O03.g
ACCDH928394DH928395
length144447
definitionDH928394|Mus musculus domesticus DNA, BAC clone: B6Ng01-125O03, 5' end.DH928395|Mus musculus domesticus DNA, BAC clone: B6Ng01-125O03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,584,657 - 30,584,767)(47,317,488 - 47,317,940)
sequence
tttgtttagttctgtaccctattttttaatagggttatttggttttctgg
agtccaacttcttgagttctttatatatatatgtatatatatatatatat
atacatatatatatatatatatgtatgtatatgtgtgtgtgtat
actgtctcacagtgcagtgcaaggggtatggcttgcctgactgttagcta
tgctcagagagacagataaatgcccaccagacctacaaccaatccaagac
caaatgccagcagtcctaggaacctctttgctggttactgggtttcattc
ttaaaaagattgcctttcaaaagagaactgtccagcagacaagatttggc
tatttgggggatgggggtggggaattcctatgccattttgatgaatatta
ttattgtcaagctgagataattttttcttttttcttttttaatatatttc
cctcagttacaatgagactttcggctggtagtttcttgagacttggtgct
attcagaattttttttttgcagcttcagcttcctgaatctgctcctagat
atgctaagtggctgccattcttattttaggcaactttttgagacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30584657_30584767
seq2: B6Ng01-125O03.b_126_198

seq1  TATATATATACACACATGTATATATATATATATATATATATATATATATA  50
      |||||||||      ||||||||||||||||||||||| |||||||||||
seq2  TATATATAT------ATGTATATATATATATATATATACATATATATATA  44

seq1  TATATAATCCATTATATATATGTACACACACACACACATATGTGTGTGTG  100
      ||          ||||| |||||              |||||||||||||
seq2  TA----------TATATGTATGT--------------ATATGTGTGTGTG  70

seq1  TGTGTGTGTAT  111
      | |        
seq2  TAT--------  73

seq1: chr4_47317488_47317940
seq2: B6Ng01-125O03.g_69_521

seq1  GAATTCACTGTCTCACAGTGCAGTGCAAGGGGTATGGCTTGCCTGACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCTCACAGTGCAGTGCAAGGGGTATGGCTTGCCTGACTGT  50

seq1  TAGCTATGCTCAGAGAGACAGATAAATGCCCACCAGACCTACAACCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGCTCAGAGAGACAGATAAATGCCCACCAGACCTACAACCAATC  100

seq1  CAAGACCAAATGCCAGCAGTCCTAGGAACCTCTTTGCTGGTTACTGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCAAATGCCAGCAGTCCTAGGAACCTCTTTGCTGGTTACTGGGTT  150

seq1  TCATTCTTAAAAAGATTGCCTTTCAAAAGAGAACTGTCCAGCAGACAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTAAAAAGATTGCCTTTCAAAAGAGAACTGTCCAGCAGACAAGA  200

seq1  TTTGGCTATTTGGGGGATGGGGGTGGGGAATTCCTATGCCATTTTGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTATTTGGGGGATGGGGGTGGGGAATTCCTATGCCATTTTGATGA  250

seq1  ATATTATTATTGTCAAGCTGAGATAATTTTTTCTTTTTTCTTTTTTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTATTGTCAAGCTGAGATAATTTTTTCTTTTTTCTTTTTTAATA  300

seq1  TATTTCCCTCAGTTACAATGAGACTTTCGGCTGGTAGTTTCTTGAGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCTCAGTTACAATGAGACTTTCGGCTGGTAGTTTCTTGAGACTT  350

seq1  GGTGCTATTCAGAATTTTTTTTTTGCAGCTTCAGCTTCCTGAATCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTATTCAGAATTTTTTTTTTGCAGCTTCAGCTTCCTGAATCTGCTC  400

seq1  CTAGATATGCTAAGTGGCTGCCATTCTTATTTTAGGCAACTTTTTGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATGCTAAGTGGCTGCCATTCTTATTTTAGGCAACTTTTTGAGAC  450

seq1  AGA  453
      |||
seq2  AGA  453