BAC Information

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BAC

Clone NameB6Ng01-126B17
Chromosome4 (Build37)
Map Location 59,750,254 - 59,893,418
singlet/doubletdoublet
Overlap geneE130308A19Rik, 1110054O05Rik, Snx30
Upstream geneOlfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, LOC100041592
Downstream geneSlc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126B17.bB6Ng01-126B17.g
ACCDH928563DH928564
length901880
definitionDH928563|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B17, 5' end.DH928564|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,892,826 - 59,893,418)(59,750,254 - 59,751,136)
sequence
gaattcctactggtttcttgaacaaaatctatgccttaatgaataacaac
gaagtaaatgtaagtgagtgggaagattaaatgaatttaaaggaagaaaa
aaaaaaaaacaacaacctctgctcaggctgacgtcatcaacctagatcaa
acctggggagtctgatgccaggtcattcgttattggcacatttaaaacac
agtacagtttgggaaaacgtttccaggaaagtcactccaattccaggtgc
acaataaagcttaaggcgtgactacacagacactgtttaaaaagtccgag
tgccatgacggtgggttctgtcgttagaaggcttagaatctgctgtgctc
tctgaccaacccagcacagaggccagaaagcacatgtgacagccccccta
agaatgggttctattaactgggaactaaagattaacagtctggtgggata
aacatttttgggtgatttgggtgaggtctgtctctacagcaaaaggtggg
tgaggtctacctctacagacagaaaaaaaaaaaaagtcaccagatggtta
acaatgtccactcccagtcttctggctgaaaaacagctaattcctctttt
gaggagaggactctttgtgtttaatattcctggttccctggtactctgtg
ggtgcaaggacctttgtgcacaccttggtgtataagtatctggcatgtgg
aggtcagagatcaaccttgtagaactgaatcttttcacatttacatgggc
cctgaagagaacacttggctccttaggtctttgtagtgaatacctgaccc
actgaaccatcttgccagccctgaagaacactcttaccaaacactcggaa
tgctttctctttgtgcctattgttggtaagcctgccaacctactaacact
g
gaattcactatgtataccaggctggccttgtgggcataaagatctgcctg
tctcgtgagagctagaaatttcaattctttactatctttttggagctctt
tgttactgaatatcaccccgggatgaaactcactaaagaaggggatggca
cattaatgtctctattgtttttgtttctagcttattctactaagctcaac
aaatttcctgtatttaatattaatgatgacttgaatggtctgtgtaccag
tgcagtgagcccaaacaccaccaaagccacgaggtacgccctaaatgtgt
ggcgctactggtgcatgaccaacgggctcaaagaccacacggacatcacc
aaggtaagggacgcgtgagtttgctaattcttttggctaacttcactgag
cttccaggtgccagtcactgtgctaactgctctggggaatgtaggtgaag
ggacatgacatacaaagaaaattatccacagaaccaagtagaatttagag
agttttaatgaatgtgcgtctgttaaaatgttcaggagagtaaatccagc
caggcttccagtatctggagttggtagaattaggagacgggaggtcagaa
gaacagatgatgtgagaaagaacgtagaggcggagccacttgctgcactc
cggctggaccgaagcactgggcatcaagggctctcaagctcagggtcttg
gttttagtttggtttggtttgtttgaatttttcaagacagctttctctgt
gtagctctggctatcctagaactcactttgtagaccaggctggcctaaac
tcaagaaaatctgcttgactgtctccaagtgctgggattaaagcatggtg
tcacccttgccactgtcagtctcaggactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59892826_59893418
seq2: B6Ng01-126B17.b_48_640 (reverse)

seq1  GAATTAGCTGTTTTTCAGCCAGAAGACTGGGAGTGGACATTGTTAACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGCTGTTTTTCAGCCAGAAGACTGGGAGTGGACATTGTTAACCAT  50

seq1  CTGGTGACTTTTTTTTTTTTTCTGTCTGTAGAGGTAGACCTCACCCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGACTTTTTTTTTTTTTCTGTCTGTAGAGGTAGACCTCACCCACCT  100

seq1  TTTGCTGTAGAGACAGACCTCACCCAAATCACCCAAAAATGTTTATCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTAGAGACAGACCTCACCCAAATCACCCAAAAATGTTTATCCCA  150

seq1  CCAGACTGTTAATCTTTAGTTCCCAGTTAATAGAACCCATTCTTAGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGTTAATCTTTAGTTCCCAGTTAATAGAACCCATTCTTAGGGGG  200

seq1  GCTGTCACATGTGCTTTCTGGCCTCTGTGCTGGGTTGGTCAGAGAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCACATGTGCTTTCTGGCCTCTGTGCTGGGTTGGTCAGAGAGCACA  250

seq1  GCAGATTCTAAGCCTTCTAACGACAGAACCCACCGTCATGGCACTCGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTCTAAGCCTTCTAACGACAGAACCCACCGTCATGGCACTCGGAC  300

seq1  TTTTTAAACAGTGTCTGTGTAGTCACGCCTTAAGCTTTATTGTGCACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACAGTGTCTGTGTAGTCACGCCTTAAGCTTTATTGTGCACCTG  350

seq1  GAATTGGAGTGACTTTCCTGGAAACGTTTTCCCAAACTGTACTGTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGAGTGACTTTCCTGGAAACGTTTTCCCAAACTGTACTGTGTTTT  400

seq1  AAATGTGCCAATAACGAATGACCTGGCATCAGACTCCCCAGGTTTGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCCAATAACGAATGACCTGGCATCAGACTCCCCAGGTTTGATCT  450

seq1  AGGTTGATGACGTCAGCCTGAGCAGAGGTTGTTGTTTTTTTTTTTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGATGACGTCAGCCTGAGCAGAGGTTGTTGTTTTTTTTTTTTTCTT  500

seq1  CCTTTAAATTCATTTAATCTTCCCACTCACTTACATTTACTTCGTTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAATTCATTTAATCTTCCCACTCACTTACATTTACTTCGTTGTTA  550

seq1  TTCATTAAGGCATAGATTTTGTTCAAGAAACCAGTAGGAATTC  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAGGCATAGATTTTGTTCAAGAAACCAGTAGGAATTC  593

seq1: chr4_59750254_59751136
seq2: B6Ng01-126B17.g_67_946

seq1  GAATTCACTATGTATACCAGGCTGGCCTTGTGGGCATAAAGATCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTATACCAGGCTGGCCTTGTGGGCATAAAGATCTGCCTG  50

seq1  TCTCGTGAGAGCTAGAAATTTCAATTCTTTACTATCTTTTTGGAGCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTGAGAGCTAGAAATTTCAATTCTTTACTATCTTTTTGGAGCTCTT  100

seq1  TGTTACTGAATATCACCCCGGGATGAAACTCACTAAAGAAGGGGATGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGAATATCACCCCGGGATGAAACTCACTAAAGAAGGGGATGGCA  150

seq1  CATTAATGTCTCTATTGTTTTTGTTTCTAGCTTATTCTACTAAGCTCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATGTCTCTATTGTTTTTGTTTCTAGCTTATTCTACTAAGCTCAAC  200

seq1  AAATTTCCTGTATTTAATATTAATGATGACTTGAATGGTCTGTGTACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTGTATTTAATATTAATGATGACTTGAATGGTCTGTGTACCAG  250

seq1  TGCAGTGAGCCCAAACACCACCAAAGCCACGAGGTACGCCCTAAATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAGCCCAAACACCACCAAAGCCACGAGGTACGCCCTAAATGTGT  300

seq1  GGCGCTACTGGTGCATGACCAACGGGCTCAAAGACCACACGGACATCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTACTGGTGCATGACCAACGGGCTCAAAGACCACACGGACATCACC  350

seq1  AAGGTAAGGGACGCGTGAGTTTGCTAATTCTTTTGGCTAACTTCACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAGGGACGCGTGAGTTTGCTAATTCTTTTGGCTAACTTCACTGAG  400

seq1  CTTCCAGGTGCCAGTCACTGTGCTAACTGCTCTGGGGAATGTAGGTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGTGCCAGTCACTGTGCTAACTGCTCTGGGGAATGTAGGTGAAG  450

seq1  GGACATGACATACAAAGAAAATTATCCACAGAACCAAGTAGAATTTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGACATACAAAGAAAATTATCCACAGAACCAAGTAGAATTTAGAG  500

seq1  AGTTTTAATGAATGTGCGTCTGTTAAAATGTTCAGGAGAGTAAATCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAATGAATGTGCGTCTGTTAAAATGTTCAGGAGAGTAAATCCAGC  550

seq1  CAGGCTTCCAGTATCTGGAGTTGGTAGAATTAGGAGACGGGAGGTCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCCAGTATCTGGAGTTGGTAGAATTAGGAGACGGGAGGTCAGAA  600

seq1  GAACAGATGATGTGAGAAAGAACGTAGAGGCGGAGCCACTTGCTGCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGATGATGTGAGAAAGAACGTAGAGGCGGAGCCACTTGCTGCACTC  650

seq1  CGGCTGGACCGAAGCACTGGGCATCAAGGGCTCTCAAGCTCAGGGTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGGACCGAAGCACTGGGCATCAAGGGCTCTCAAGCTCAGGGTCTTG  700

seq1  GTTTTAGTTTGGTTTGGTTTGTTTGAATTTTTCAAGACAGCTTTCTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGTTTGGTTTGGTTTGTTTGAATTTTTCAAGACAGCTTTCTCTGT  750

seq1  GTAGCTCTGGCTATCCTAGAACTCACTTTGTAGACCAGGCTGGCCTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTAGCTCTGGCTATCCTAGAACTCACTTTGTAGACCAGGCTGGCC-TAAA  799

seq1  CTCACAGAGATCTGCTTGACTGTCTCCCAAGTGCTGGGATTAAAGGCAT-  849
      ||||   | |||||||||||||||| |||||||||||||||||| |||| 
seq2  CTCAAGAAAATCTGCTTGACTGTCT-CCAAGTGCTGGGATTAAA-GCATG  847

seq1  GTGTCACCACTGCCACTGTCAAGCTCAGGGACTT  883
      ||||||||  |||||||||||  |||| ||||||
seq2  GTGTCACCCTTGCCACTGTCAGTCTCA-GGACTT  880