BAC Information

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BAC

Clone NameB6Ng01-126G11
Chromosome4 (Build37)
Map Location 150,932,185 - 151,118,012
singlet/doubletdoublet
Overlap geneCamta1
Upstream geneRere, Slc45a1, LOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3
Downstream geneLOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126G11.bB6Ng01-126G11.g
ACCDH928782DH928783
length1,119488
definitionDH928782|Mus musculus domesticus DNA, BAC clone: B6Ng01-126G11, 5' end.DH928783|Mus musculus domesticus DNA, BAC clone: B6Ng01-126G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,932,185 - 150,933,311)(151,117,520 - 151,118,012)
sequence
gaattcagtacccatcctgtcttcatgacctattgctcttggctccagaa
acagttatttcattagagcataaaagcctctgttctctaagagttcatct
cgaaccgctagcaacccagcgaggagggcagtaaatcttcgcctacggca
atttcattcctgccctatcggcccgagccctatcttgccaacacaaggct
tcaccgtggagcttcgggaaggagacccatgatctgaaacttcaggaacc
tatgtaatacacgctgctggcagagcccgagaaatggttcaaaaatccat
tagtgggctggcgagagggctcggtgggtagaggtgcttgctgtcaagtc
tgacagcctgagtttgatccccaggatctgtgtggtgggagaaaacccca
gtccccttcaactatgtacagactaaataaataagcaaataattatatac
tcgttaggtgtcctgacttgcagtgtggtcttggctaatacatcactgtg
actttggaatatgaacgtggagacaggcattgaagaggagattgtattta
attctgccctccagtggcaaacagaacaacccagagaacttgctcctaat
ggcagagggaccttgtgtatggcaggagcgtgttgggtgaatgtcacaga
gcacaggatgggggactcacacaggagaaggtgtggtggtttgaatatgc
ttggcccaggaagtagcactatgtggaggtgtggccttgttggagtaggt
gtggcctttgttggagtaggtatgccattgtgggtgtgagctttaagacc
ttcatcctagctgtctggaagccagtcttcagatgaagatggagaactct
cagcatctcctgcaccatgcctgcctggatgctgccatatttcccacctt
gatgctaacggcctgaacctctgaaagccagcctcaattaaatgttgtcc
ttataagagctgccttggtcatggtgtctgctcacagcaatatactctga
gacggaaatgaatgtgtctaaaacaaagtggggccctccatcaaagcatt
gtgaactgaagaatgttaggcaccagaaggactcgagacaggacagttac
ctgactgcagcatcagccc
agaggacaaccacttgagtcctggggatcagactcaggccagtcagcctt
ggcagcaggtgcaagtgagccatctcacgcgttgactttatttgttgtcc
gtggatttctttcttacctgtgtgaggagtgggtggggcctttctccccc
gccccccaagtgagaagtgggtggagcgttcccccccacgtgaggagtgg
gtgaggcgttcccccctcccacacacgtaaggagtgggtgggttcagtct
ttctcattgaagcatcgggttacctcagcatcctgctagttaactgggag
gaggcccacggggcaccacagtttgctcttttgtgaagagcgatctgtcc
ctatctgtgagggtttatttctggatctattccattgatctgcttgtcta
tttttaagccaatactacactgtcctgacacttttaacggcgttggatcc
tttgacaaaaggctgtctcctcttttcacctaccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_150932185_150933311
seq2: B6Ng01-126G11.b_40_1158

seq1  GAATTCAGTACCCATCCTGTCTTCATGACCTACTGCTCTTGGCTCCAGAA  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCAGTACCCATCCTGTCTTCATGACCTATTGCTCTTGGCTCCAGAA  50

seq1  ACAGTTATTTCATTAGAGCATAAAAGCCTCTGTTCTCTAAGAGTTCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATTTCATTAGAGCATAAAAGCCTCTGTTCTCTAAGAGTTCATCT  100

seq1  CGAACCGCTAGCAACCCAGCGAGGAGGGCAGTAAATCTTCGCCTACGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCGCTAGCAACCCAGCGAGGAGGGCAGTAAATCTTCGCCTACGGCA  150

seq1  ATTTCATTCCTGCCCTATCGGCCCGAGCCCTATCTTGCCAACACAAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTCCTGCCCTATCGGCCCGAGCCCTATCTTGCCAACACAAGGCT  200

seq1  TCACCGTGGAGCTTCGGGAAGGAGACCCATGATCTGAAACTTCAGGAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGTGGAGCTTCGGGAAGGAGACCCATGATCTGAAACTTCAGGAACC  250

seq1  TATGTAATACACGCTGCTGGCAGAGCCCGAGAAATGGTTCAAAAATCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATACACGCTGCTGGCAGAGCCCGAGAAATGGTTCAAAAATCCAT  300

seq1  TAGTGGGCTGGCGAGAGGGCTCGGTGGGTAGAGGTGCTTGCTGTCAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGCTGGCGAGAGGGCTCGGTGGGTAGAGGTGCTTGCTGTCAAGTC  350

seq1  TGACAGCCTGAGTTTGATCCCCAGGATCTGTGTGGTGGGAGAAAACCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCTGAGTTTGATCCCCAGGATCTGTGTGGTGGGAGAAAACCCCA  400

seq1  GTCCCCTTCAACTATGTACAGACTAAATAAATAAGCAAATAATTATATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTTCAACTATGTACAGACTAAATAAATAAGCAAATAATTATATAC  450

seq1  TCGTTAGGTGTCCTGACTTGCAGTGTGGTCTTGGCTAATACATCACTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAGGTGTCCTGACTTGCAGTGTGGTCTTGGCTAATACATCACTGTG  500

seq1  ACTTTGGAATATGAACGTGGAGACAGGCATTGAAGAGGAGATTGTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAATATGAACGTGGAGACAGGCATTGAAGAGGAGATTGTATTTA  550

seq1  ATTCTGCCCTCCAGTGGCAAACAGAACAACCCAGAGAACTTGCTCCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCCTCCAGTGGCAAACAGAACAACCCAGAGAACTTGCTCCTAAT  600

seq1  GGCAGAGGGACCTTGTGTATGGCAGGAGCGTGTTGGGTGAATGTCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGGACCTTGTGTATGGCAGGAGCGTGTTGGGTGAATGTCACAGA  650

seq1  GCACAGGATGGGGGACTCACACAGGAGAAGGTGTGGTGGTTTGAATATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGATGGGGGACTCACACAGGAGAAGGTGTGGTGGTTTGAATATGC  700

seq1  TTGGCCCAGGAAGTAGCACTATGTGGAGGTGTGGCCTTGTTGGAGTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCAGGAAGTAGCACTATGTGGAGGTGTGGCCTTGTTGGAGTAGGT  750

seq1  GTGGCC-TTGTTGGAGTAGGTATGCCATTGTGGGTGTGAGCTTTAAGACC  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTTGTTGGAGTAGGTATGCCATTGTGGGTGTGAGCTTTAAGACC  800

seq1  TTCATCCTAGCTGTCTGGAAGCCAGTCTTCAGATGAAGATGGAGAACTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTAGCTGTCTGGAAGCCAGTCTTCAGATGAAGATGGAGAACTCT  850

seq1  CAGCATCTCCTGCACCATGCCTGCCTGGATGCTGCCATA-TTCCCACCTT  898
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGCATCTCCTGCACCATGCCTGCCTGGATGCTGCCATATTTCCCACCTT  900

seq1  GATGCTAACGGCCTGAACCTCTGAAAGCCAGCCCCAATTAAATGTTGTCC  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GATGCTAACGGCCTGAACCTCTGAAAGCCAGCCTCAATTAAATGTTGTCC  950

seq1  TTATAAGAGCTGCCTTGGTCATGGTGTCTGCTCACAGCAATAAAACCCTG  998
      ||||||||||||||||||||||||||||||||||||||||| | || |||
seq2  TTATAAGAGCTGCCTTGGTCATGGTGTCTGCTCACAGCAAT-ATACTCTG  999

seq1  AGACAGAAAGGAAATGGTTCAGAGAACAAAAGTGGGGCCCTCACAATCAA  1048
      |||| |||| | ||||  ||  | ||| |||||||||||||  | |||||
seq2  AGACGGAAATG-AATGTGTC-TAAAAC-AAAGTGGGGCCCT--CCATCAA  1044

seq1  AGCAGTGTGAACTG-AGAATGGCTAGGCACCCAGAAGGTACCGAGACAGG  1097
      |||| ||||||||| ||||| | |||||| ||||||||   |||||||||
seq2  AGCATTGTGAACTGAAGAAT-GTTAGGCA-CCAGAAGGACTCGAGACAGG  1092

seq1  ACAGTCACCATGACGTGCAGCATCATGCCC  1127
      ||||| ||| |||| |||||||||| ||||
seq2  ACAGTTACC-TGAC-TGCAGCATCA-GCCC  1119

seq1: chr4_151117520_151118012
seq2: B6Ng01-126G11.g_68_561 (reverse)

seq1  GGAAGGTAGGTG-AGAGTGGGGACAGCCTTTTGTCAAAGGATCCAACGCC  49
      |||||||||||| | || || |||||||||||||||||||||||||||||
seq2  GGAAGGTAGGTGAAAAGAGGAGACAGCCTTTTGTCAAAGGATCCAACGCC  50

seq1  GTTAAAAGTGTCAGGACAGTGTAGTATTGGCTTAAAAATAGACAAGCAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGTGTCAGGACAGTGTAGTATTGGCTTAAAAATAGACAAGCAGA  100

seq1  TCAATGGAATAGATCCAGAAATAAACCCTCACAGATAGGGACAGATCGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGAATAGATCCAGAAATAAACCCTCACAGATAGGGACAGATCGCT  150

seq1  CTTCACAAAAGAGCAAACTGTGGTGCCCCGTGGGCCTCCTCCCAGTTAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAAAAGAGCAAACTGTGGTGCCCCGTGGGCCTCCTCCCAGTTAAC  200

seq1  TAGCAGGATGCTGAGGTAACCCGATGCTTCAATGAGAAAGACTGAACCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGATGCTGAGGTAACCCGATGCTTCAATGAGAAAGACTGAACCCA  250

seq1  CCCACTCCTTACGTGTGTGGGAGGGGGGAACGCCTCACCCACTCCTCACG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCTTACGTGTGTGGGAGGGGGGAACGCCTCACCCACTCCTCACG  300

seq1  TGGGGGGGAACGCTCCACCCACTTCTCACTTGGGGGGCGGGGGAGAAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGAACGCTCCACCCACTTCTCACTTGGGGGGCGGGGGAGAAAGG  350

seq1  CCCCACCCACTCCTCACACAGGTAAGAAAGAAATCCACGGACAACAAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCACTCCTCACACAGGTAAGAAAGAAATCCACGGACAACAAATA  400

seq1  AAGTCAACGCGTGAGATGGCTCACTTGCACCTGCTGCCAAGGCTGACTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACGCGTGAGATGGCTCACTTGCACCTGCTGCCAAGGCTGACTGG  450

seq1  CCTGAGTCTGATCCCCAGGACTCAAGTGGTTGTCCTCTGAATTC  493
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCTGATCCCCAGGACTCAAGTGGTTGTCCTCTGAATTC  494