BAC Information

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BAC

Clone NameB6Ng01-126M06
Chromosome4 (Build37)3 (Build37)
Map Location 33,097,467 - 33,097,61295,214,340 - 95,215,436
singlet/doubletsingletsinglet
Overlap geneRragd
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298
Downstream gene4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt, LOC100041919, LOC100041924, Cnr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126M06.bB6Ng01-126M06.g
ACCDH929050DH929051
length6701,077
definitionDH929050|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M06, 5' end.DH929051|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,097,467 - 33,097,612)(95,214,340 - 95,215,436)
sequence
gaattctaatcacaggacctcgaaaatgtgactttatttggaagtagggg
cactgtagatgccattaattagtagatgtcattaattagattaagatgaa
gtcattaggtcagccttaatccagtaggactgaagtctgcacacacgagg
ccttgcgaggtttgagggcaagagagaggcctgtttctacaagtcaaaga
atggaaatcacacggctgcaagcctcaaaatctggggaggtgctcaactc
cttccttccttccttccttccttccatacttccttccttccttccttcct
ccccccttccctccccactctctctctctctctttcttttcattgtgtgt
gtgtgtttgtgtgtgtgtgtgagatgtgtcccaggttcaatgtgaccttg
aaattgctatgtaccaaaggctggtcttgaactcctgaccctcctgcctc
cactgtccaatgccaggattattgcaccacactggtctcttttttatcac
catcaatctattattattattttttaaagatttatttatttatttttaag
tgtgtgagtacactgaagctgtcttcatacacatcagaagagggcatcgg
atcccattacgatgattgtgagccaccatgtggttgctgggaattgaatt
caggacttcaggaagagcag
gaattcctgataaggagacttggtgaagacagtctctttccagaggtcgg
gggtcaggtagctgtaagtcttagagatggcatcaaaggtggccttagca
aaattgcccagggtggcagtgcagcctctggctgaagtgtagcagtcatc
tatactggccatcatcaggagcttcttgggcacaggagcagagacaattc
cagtgcctctgggggcagggatgagacgcaccagcacagagccacagcgg
cctgtcaccttgcatggaacagtgtggggcttgccaatcttgttccccca
gtaacctctccacacagggacgatggaaagcttggccaagatgatggccc
ctccgatggcagtggcaacctccttggagcacttaacaccaagaccaacg
tgaccattgtagttcccaatagcgatgaaagccttgaacctggtccgctg
gccagcccgagtctgcttctgcactggcatgattttcagaacctcatcct
ttagggacgcacccaggaagaagtcaatgatctcagacttcttaataggc
agggagaacaggtagatctcctccaaggacttgatcttcatgtccttaac
caggcggcccagcttggtgacagggatccactccttgtcttcagctttac
ctccacgagccccgtggcctcgacaacggccacgacccctaagaccgctg
ccgaattctccgcggaagccgcctcggcctcctaatcctgggcccctggg
tcctccgggcaccttcccactgcaccagcgtcatccgccatttggtgttt
cccgaagaagaagaagcggccttctctttcacttggcaagtaccacacca
actaaaccatatctttaccatctttcgtatctttctaaacacagatgaag
atattttccactgtttgagtagccatgaaattgccattttctacgatgga
aatctacatcatttccaaatctcctctcacttaacccttctttctttgcg
tccgttctactcttctttcctcctcctctctttaacttcttggagactgt
ctcatgtagctgtttaacttgatcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_33097467_33097612
seq2: B6Ng01-126M06.b_567_716

seq1  TTTTTTAAAGATTTATTTATTTCATTTATA------TGAGTACACTGCAG  44
      |||||||||||||||||||||| |||| ||      ||||||||||| ||
seq2  TTTTTTAAAGATTTATTTATTT-ATTTTTAAGTGTGTGAGTACACTGAAG  49

seq1  CTGTCTTCAGACACACCAGAAGAGGGCACCAGATCTCATTACAGATGGTT  94
      ||||||||| ||||| |||||||||||| | |||| |||||| |||| ||
seq2  CTGTCTTCATACACATCAGAAGAGGGCATCGGATCCCATTAC-GATGATT  98

seq1  GTGAGCCACCATGTGGTTGCTGGGAACTGAACTCAGGACCTCTGGAAGAG  144
      |||||||||||||||||||||||||| |||| ||||||| || |||||||
seq2  GTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAGGACTTCAGGAAGAG  148

seq1  CA  146
      ||
seq2  CA  150

seq1: chr3_95214340_95215436
seq2: B6Ng01-126M06.g_70_1146

seq1  GAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGG  50

seq1  GGGTCAGGTAGCTGTAAGTCTTAGAGATGGCATCAAAGGTGGCCTTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGTAGCTGTAAGTCTTAGAGATGGCATCAAAGGTGGCCTTAGCA  100

seq1  AAATTGCCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATC  150

seq1  TATACTGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATTC  200

seq1  CAGTGCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGG  250

seq1  CCTGTCACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCA  300

seq1  GTAACCTCTCCACACAGGGACGATGGAAAGCTTGGCCAAGATGATGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTCTCCACACAGGGACGATGGAAAGCTTGGCCAAGATGATGGCCC  350

seq1  CTCCGATGGCAGTGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGATGGCAGTGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACG  400

seq1  TGACCATTGTAGTTCCCAATAGCGATGAAAGCCTTGAACCTGGTCCGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTGTAGTTCCCAATAGCGATGAAAGCCTTGAACCTGGTCCGCTG  450

seq1  GCCAGCCCGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCCGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCT  500

seq1  TTAGGGACGCACCCAGGAAGAAGTCAATGATCTCAGACTTCTTAATAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGACGCACCCAGGAAGAAGTCAATGATCTCAGACTTCTTAATAGGC  550

seq1  AGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAAC  600

seq1  CAGGCGGCCCAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGCCCAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTAC  650

seq1  CTCCACGAGCCCCGTGGCCTCGACAACGGCCACGACCCCTAAGACCGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGAGCCCCGTGGCCTCGACAACGGCCACGACCCCTAAGACCGCTG  700

seq1  CCGAATTCTCCGCGGAAGCCGCCTCGGCCTCCTAATCCTGGGCCCCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATTCTCCGCGGAAGCCGCCTCGGCCTCCTAATCCTGGGCCCCTGGG  750

seq1  TCCTCCGGGCACCTT-CCACTGCACCAGCGTCATCCGCCATTTGGTGTTT  799
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  TCCTCCGGGCACCTTCCCACTGCACCAGCGTCATCCGCCATTTGGTG-TT  799

seq1  TCCCGAAGAAGAAGAAGCGGCCTTCTCTTTCACTTGGCAAGTACCACACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAAGAAGAAGAAGCGGCCTTCTCTTTCACTTGGCAAGTACCACACC  849

seq1  AACTAAACCATATCTTTACCATCTTTCGTTATCTTTCTAAACACAGATGA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AACTAAACCATATCTTTACCATCTTTCG-TATCTTTCTAAACACAGATGA  898

seq1  AGAATATGTCCACTGTTTGAGTAAGCCATGAAATTGCCATTTTCTAAGAA  949
      |||   | |||||||||||||| ||||||||||||||||||||||| | |
seq2  AGATATTTTCCACTGTTTGAGT-AGCCATGAAATTGCCATTTTCTACG-A  946

seq1  TGGAAATCTACATCATTTCCAAATCTCCTCTCACTTTTACCCTTCCTTTC  999
      |||||||||||||||||||||||||||||||||| || |||||| |||||
seq2  TGGAAATCTACATCATTTCCAAATCTCCTCTCAC-TTAACCCTT-CTTTC  994

seq1  TTTTTCCTTCCCTTTCTACCTCTTCTTTCTCTTCCTCCTCCTTCTTTTAT  1049
        ||| | | || ||||| |||||||     |||||||||| ||| ||  
seq2  --TTTGCGT-CCGTTCTA-CTCTTCT-----TTCCTCCTCC-TCTCTTTA  1034

seq1  ACTTCTTTGAGACTGTCTCATGTAGCTGGTTTTAAACTTTTGATCTTT  1097
      ||||||| ||||||||||||||||||||  |||||    |||||||||
seq2  ACTTCTTGGAGACTGTCTCATGTAGCTG--TTTAA---CTTGATCTTT  1077