BAC Information

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BAC

Clone NameB6Ng01-127B05
Chromosome4 (Build37)
Map Location 55,399,682 - 55,520,250
singlet/doubletdoublet
Overlap geneRad23b, LOC666953, LOC100041348
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211
Downstream geneKlf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127B05.bB6Ng01-127B05.g
ACCDH929287DH929288
length993183
definitionDH929287|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B05, 5' end.DH929288|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,399,682 - 55,400,685)(55,520,068 - 55,520,250)
sequence
gaattctcccctccaacaccccaaatcaatatttgccccccccccttctg
tctccctgtctgcatgtctgcttcactcctgtaaggttggtgaacttacc
ccagagcttcccccaatttggcttgaattgactcatttctccggcagaga
atgactgatcagcaagtgtgaaatcagagggtgtggagtgctgcaatttt
gtttacaaaataactgtggctgtttcagatcctcattcattcttctgtgt
aagcctcagggtcggcttgtccattttcagggggtgaactctggctgagt
gtagagcccttattatgcttactctggaaatgaatttgagaaatgtcctc
tatcttttcttcccctctttttggtttttgggcttgtcatttgagcaatc
ttgatatagtagcctatggtggcttggtatgtaggtgaggataaccttga
agtcttgattcttcggccatcattttgcaagcactgggattgcagcatgc
aatacccgggaggtgcagtcttaagattgtagtaagatcatttcaaaaca
aaacaacttaattcttaccaaggcatggtcagtgatatattgtagctgta
ataattaaaaattaaaattttaggctgggcgtggtggcgcatgcctttaa
tcccagcacttgggaggcagaggcaggcgaatttctgagtttgaagccag
cctggtctacacagtgagttccaggacagccagggctacacagagaaacc
ctgtctcaaaaaacaaaaaaaattaaattttgtattacttttgagtttat
ttcctaagaactattctttttgatgctgttaggaattgttctttttattt
caaaatgttcattgttagttgcagagcagaacagttgggtttctggggtg
tcttattatccccaaatctgctgaactcattgtagtttattcccatgaag
cttgctggtaggaagttcctcttcatgtcaggtgtgaagattt
actgtcctactgtgaaccatacattcatttgctcaaaaaactggatgtga
tggaagctagagagacaaaccaaaaaaattggtggggagtgttgctgtac
acctgacctcctgttctgttcatgtttgtgtgtgtgtcagtgttcctgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_55399682_55400685
seq2: B6Ng01-127B05.b_47_1039

seq1  GAATTCTCCCCTCCAACACCCCAAATCAATATTTGCCCCCCCCCCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCCTCCAACACCCCAAATCAATATTTGCCCCCCCCCCTTCTG  50

seq1  TCTCCCTGTCTGCATGTCTGCTTCACTCCTGTAAGGTTGGTGAACTTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGTCTGCATGTCTGCTTCACTCCTGTAAGGTTGGTGAACTTACC  100

seq1  CCAGAGCTTCCCCCAATTTGGCTTGAATTGACTCATTTCTCCGGCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTTCCCCCAATTTGGCTTGAATTGACTCATTTCTCCGGCAGAGA  150

seq1  ATGACTGATCAGCAAGTGTGAAATCAGAGGGTGTGGAGTGCTGCAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGATCAGCAAGTGTGAAATCAGAGGGTGTGGAGTGCTGCAATTTT  200

seq1  GTTTACAAAATAACTGTGGCTGTTTCAGATCCTCATTCATTCTTCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAAAATAACTGTGGCTGTTTCAGATCCTCATTCATTCTTCTGTGT  250

seq1  AAGCCTCAGGGTCGGCTTGTCCATTTTCAGGGGGTGAACTCTGGCTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCAGGGTCGGCTTGTCCATTTTCAGGGGGTGAACTCTGGCTGAGT  300

seq1  GTAGAGCCCTTATTATGCTTACTCTGGAAATGAATTTGAGAAATGTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCCCTTATTATGCTTACTCTGGAAATGAATTTGAGAAATGTCCTC  350

seq1  TATCTTTTCTTCCCCTCTTTTTGGTTTTTGGGCTTGTCATTTGAGCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTCTTCCCCTCTTTTTGGTTTTTGGGCTTGTCATTTGAGCAATC  400

seq1  TTGATATAGTAGCCTATGGTGGCTTGGTATGTAGGTGAGGATAACCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATAGTAGCCTATGGTGGCTTGGTATGTAGGTGAGGATAACCTTGA  450

seq1  AGTCTTGATTCTTCGGCCATCATTTTGCAAGCACTGGGATTGCAGCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGATTCTTCGGCCATCATTTTGCAAGCACTGGGATTGCAGCATGC  500

seq1  AATACCCGGGAGGTGCAGTCTTAAGATTGTAGTAAGATCATTTCAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCGGGAGGTGCAGTCTTAAGATTGTAGTAAGATCATTTCAAAACA  550

seq1  AAACAACTTAATTCTTACCAAGGCATGGTCAGTGATATATTGTAGCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTTAATTCTTACCAAGGCATGGTCAGTGATATATTGTAGCTGTA  600

seq1  ATAATTAAAAATTAAAATTTTAGGCTGGGCGTGGTGGCGCATGCCTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAAAATTAAAATTTTAGGCTGGGCGTGGTGGCGCATGCCTTTAA  650

seq1  TCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTTGAAGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTTGAAGCCAG  700

seq1  CCTGGTCTACACAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACACAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC  750

seq1  CTGTCTCAAAAAACAAAAAAAATTAAAATTTTGTATTACTTTTGAGTTTA  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGTCTCAAAAAACAAAAAAAATT-AAATTTTGTATTACTTTTGAGTTTA  799

seq1  TTTCCTAAGAACTATTCTTTTTGATGCTGTTAGGAATTGTTCTTTTTATT  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTCCTAAGAACTATTCTTTTTGATGCTGTTAGGAATTGTTCTTTTTA-T  848

seq1  TTCAAAATGTTCATTGTTAGTTGCAGAGAAGAACAGTTTGGTTTTCTGTG  900
      |||||||||||||||||||||||||||| ||||||| |||| |||||| |
seq2  TTCAAAATGTTCATTGTTAGTTGCAGAGCAGAACAG-TTGGGTTTCTGGG  897

seq1  GTGATCTTATATTCCCCAAAATCTTGCTGAACTCATTGTTAGTTTATTCC  950
      ||| ||||||  ||||| ||||| |||||||||||||| |||||||||||
seq2  GTG-TCTTATTATCCCC-AAATC-TGCTGAACTCATTG-TAGTTTATTCC  943

seq1  CATGGAGCTTGCTGGTTAGGGAAGTTCCTCTTCAGTGTCAGGGTGTGAAG  1000
      |||| |||||||||||   ||||||||||||||| ||||| |||||||||
seq2  CATGAAGCTTGCTGGT--AGGAAGTTCCTCTTCA-TGTCA-GGTGTGAAG  989

seq1  ATTT  1004
      ||||
seq2  ATTT  993

seq1: chr4_55520068_55520250
seq2: B6Ng01-127B05.g_74_256 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACAGGAACACTGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACAGGAACACTGACAC  50

seq1  ACACACAAACATGAACAGAACAGGAGGTCAGGTGTACAGCAACACTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAACATGAACAGAACAGGAGGTCAGGTGTACAGCAACACTCCCC  100

seq1  ACCAATTTTTTTGGTTTGTCTCTCTAGCTTCCATCACATCCAGTTTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTTTTTGGTTTGTCTCTCTAGCTTCCATCACATCCAGTTTTTTG  150

seq1  AGCAAATGAATGTATGGTTCACAGTAGGACAGT  183
      |||||||||||||||||||||||||||||||||
seq2  AGCAAATGAATGTATGGTTCACAGTAGGACAGT  183