BAC Information

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BAC

Clone NameB6Ng01-129I11
Chromosome4 (Build37)
Map Location 59,679,704 - 59,831,824
singlet/doubletdoublet
Overlap geneE130308A19Rik, LOC100041592, 1110054O05Rik, Snx30
Upstream geneOlfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2
Downstream geneSlc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129I11.bB6Ng01-129I11.g
ACCDH931086DH931087
length8571,020
definitionDH931086|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I11, 5' end.DH931087|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,679,704 - 59,680,562)(59,830,813 - 59,831,824)
sequence
gaattcttaatatgttttttctctagctaaatatctccgagtctgttatg
aaactcagtaattccattatatacccaggctctgcttctcctgacacaca
ctggtagaatgacatgcagtgtaatgcaactttgcttcaaggaaactgac
cctaagaacaggtgaaagactagaagaaaaaaaccaaggtgttaatagtg
agtccttttaatagatagtgtgacacttctcttctgtttttaaagtagaa
atgaattgtcatgtattactatgtaaagtttttttttttttttttttttt
tggcaagagtatgggatagagcagtctattggttcctcttttgaatttta
tccagatactaaaggttaagaggccttttgaaaataaatagtcctacttg
gttttccgtattattcactgactcattttagtcttttttcagatttctct
gtatcttgtttatttataattagtattgaatggctctccccttccatcat
acaaggcagtgataaggtagaaaggttagtgtccagtgttgatttagtcc
atgactctgctgtctgtttcactggaatagaagtggagaacctcgggtta
gggtcacagcctgtcacccctgcagtgttgttggacacacaaaaataatc
tcatatttttcactgaggggcctggtggccccggagatattctaggaacc
ttaggagtaaaaatatctcacattgtctagctgtctctaggttttcagct
tctggtagtgtaggaggtgaataaagcccatggctcaaatttggattcgc
agagcaccttttcaggccgttaatctcttgggagtgtgtgtgtgtgtgtg
tgtgtta
gaattcactatgtagaccagactgagactaactcagtctccaagtgtttc
tctgcacgaacgaacatgcctcaagtgcaaactgtgcacttgaaggccaa
aagagggtgtcagattcctggaactgaaattacagacagttgtgagccgc
cgtgtgggtgctcggaaccaaccctgggtcttctgcaagagcagcaaact
cctaactgctgagccatctctgtagccggagtccaggcattctaggagga
ggtggttgcctttgctttgcatggaatgtgtcggaagaggagggctctct
gagtcaccagctaactccatcttttaattctttagaaatctccatactat
ttgcttcgtttccttttttttttttaagctccacacaattgtattacaat
tttaaaagaaaaacctcccgaacagacaagctgtgagactcagcggagct
gttgagaggaggaggagaaaggagcagagaaaaaaaaaaaagaaaaaagc
cactccatttactcagcctggaggtctgacacacggtggggagggtgccc
gagggaaactaagacgcccaaggtatcgcaaaagcatactttagcttctg
gccagcgtctgaaaggagacagaaaagagaaaattgggctttgtgaccca
ggcctcatcgaggagggcaggcccagcagaaacacatggtgtctcgtagg
tgtcaccaccttccctgtgtcctgtggtggctttgctgacctccactgac
tccacagacacccacccacgtggtcctgccctactctcctgccttccatc
tgagttagcagtgacggatgctggttcttcacctcatggtccctccccct
cctttcatttgtgtccccctttgtgaaccaggaagaaaacctagggccta
caagagctgctgggccctgaagctgcacttccaacatctctaccccgcct
cctatttaatgatttatgctaatctgtggaacaaggtaacatgtacccaa
gctggccccaaactatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59679704_59680562
seq2: B6Ng01-129I11.b_44_900

seq1  GAATTCTTAATATGTTTTTTCTCTAGCTAAATATCTCCGAGTCTGTTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATATGTTTTTTCTCTAGCTAAATATCTCCGAGTCTGTTATG  50

seq1  AAACTCAGTAATTCCATTATATACCCAGGCTCTGCTTCTCCTGACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGTAATTCCATTATATACCCAGGCTCTGCTTCTCCTGACACACA  100

seq1  CTGGTAGAATGACATGCAGTGTAATGCAACTTTGCTTCAAGGAAACTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGAATGACATGCAGTGTAATGCAACTTTGCTTCAAGGAAACTGAC  150

seq1  CCTAAGAACAGGTGAAAGACTAGAAGAAAAAAACCAAGGTGTTAATAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAACAGGTGAAAGACTAGAAGAAAAAAACCAAGGTGTTAATAGTG  200

seq1  AGTCCTTTTAATAGATAGTGTGACACTTCTCTTCTGTTTTTAAAGTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTTAATAGATAGTGTGACACTTCTCTTCTGTTTTTAAAGTAGAA  250

seq1  ATGAATTGTCATGTATTACTATGTAAAGTTTTTTTTTTTTTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGTCATGTATTACTATGTAAAGTTTTTTTTTTTTTTTTTTTTTT  300

seq1  TGGCAAGAGTATGGGATAGAGCAGTCTATTGGTTCCTCTTTTGAATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGAGTATGGGATAGAGCAGTCTATTGGTTCCTCTTTTGAATTTTA  350

seq1  TCCAGATACTAAAGGTTAAGAGGCCTTTTGAAAATAAATAGTCCTACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATACTAAAGGTTAAGAGGCCTTTTGAAAATAAATAGTCCTACTTG  400

seq1  GTTTTCCGTATTATTCACTGACTCATTTTAGTCTTTTTTCAGATTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCGTATTATTCACTGACTCATTTTAGTCTTTTTTCAGATTTCTCT  450

seq1  GTATCTTGTTTATTTATAATTAGTATTGAATGGCTCTCCCCTTCCATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGTTTATTTATAATTAGTATTGAATGGCTCTCCCCTTCCATCAT  500

seq1  ACAAGGCAGTGATAAGGTAGAAAGGTTAGTGTCCAGTGTTGATTTAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCAGTGATAAGGTAGAAAGGTTAGTGTCCAGTGTTGATTTAGTCC  550

seq1  ATGACTCTGCTGTCTGTTTCACTGGAATAGAAGTGGAGAACCTCGGGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTGCTGTCTGTTTCACTGGAATAGAAGTGGAGAACCTCGGGTTA  600

seq1  GGGTCACAGCCTGTCACCCCTGCAGTGTTGTTGGACACACAAAAATAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACAGCCTGTCACCCCTGCAGTGTTGTTGGACACACAAAAATAATC  650

seq1  TCATATTTTTCACTGAGGGGCCTGGTGGCCCCGGAGATATTCTAGGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTTCACTGAGGGGCCTGGTGGCCCCGGAGATATTCTAGGAACC  700

seq1  TTAGGAGTAAAAATATCTCACATTGTCTAGCTGTCTCTAGGTTTTCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGTAAAAATATCTCACATTGTCTAGCTGTCTCTAGGTTTTCAGCT  750

seq1  TCTGGTAGTGTAGGAAGGTGAATAAAGCCCATGGCTCAAACTTGGAATTC  800
      |||||||||||||| ||||||||||||||||||||||||| |||| ||||
seq2  TCTGGTAGTGTAGG-AGGTGAATAAAGCCCATGGCTCAAATTTGG-ATTC  798

seq1  GCAGAGCAACCTTTTCAGGCCGTTAATC-CTTGGGAGTGTGTGTGTGTGT  849
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  GCAGAGC-ACCTTTTCAGGCCGTTAATCTCTTGGGAGTGTGTGTGTGTGT  847

seq1  GTGTGTGTTA  859
      ||||||||||
seq2  GTGTGTGTTA  857

seq1: chr4_59830813_59831824
seq2: B6Ng01-129I11.g_70_1089 (reverse)

seq1  ATATATAGTTTGAGGCCAGCCTGGGTTACATGATACCTTGT--CACAGAT  48
      |||||||||||| ||||||| |||| |||||| ||||||||  |||||||
seq2  ATATATAGTTTGGGGCCAGCTTGGG-TACATGTTACCTTGTTCCACAGAT  49

seq1  AAGCAATAATACATAAATA-GAGGC-GGGTAGAGATGTTGGAGCTGCAGC  96
       ||||  |||   |||||| ||||| ||||||||||||||||  ||||||
seq2  TAGCATAAATCATTAAATAGGAGGCGGGGTAGAGATGTTGGAAGTGCAGC  99

seq1  -TCAGGGCCCAGCAGCTCATGGTAGGCCCTAGGTTTTCTCCCTGGTACCA  145
       ||||||||||||||||| | |||||||||||||||||| ||||||  ||
seq2  TTCAGGGCCCAGCAGCTC-TTGTAGGCCCTAGGTTTTCTTCCTGGT-TCA  147

seq1  CAAAGGGGGACACAAATGAAAGGA-GGGGAGGGA-CATGAGGTTGAGAAG  193
      |||||||||||||||||||||||| ||||||||| ||||||||  |||| 
seq2  CAAAGGGGGACACAAATGAAAGGAGGGGGAGGGACCATGAGGTGAAGAAC  197

seq1  CAGCATCCGTCACTGCTAACTCAGATGGAAGGCAGGAGAGTAGGGCA-GA  242
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGCATCCGTCACTGCTAACTCAGATGGAAGGCAGGAGAGTAGGGCAGGA  247

seq1  CCACGT-GGTGGGTGTCTGTGGAGTCAGTGGAGGTCAGCAAAGCCACCAC  291
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGGGTGGGTGTCTGTGGAGTCAGTGGAGGTCAGCAAAGCCACCAC  297

seq1  AGGACACA-GGAAGGTGGTGACACCTACGAGACACCATGTGTTTCTGCTG  340
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACAGGGAAGGTGGTGACACCTACGAGACACCATGTGTTTCTGCTG  347

seq1  GGCCTGCCCTCCTCGATGAGGCCTGGGTCACAAAGCCCAATTTTCTCTTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCCCTCCTCGATGAGGCCTGGGTCACAAAGCCCAATTTTCTCTTT  397

seq1  TCTGTCTCCTTTCAGACGCTGGCCAGAAGCT-AAGTATGCTTTTGCGATA  439
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTGTCTCCTTTCAGACGCTGGCCAGAAGCTAAAGTATGCTTTTGCGATA  447

seq1  CCTTGGGCGTCTTAGTTTCCCTCGGGCACCCTCCCCACCGTGTGTCAGAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGCGTCTTAGTTTCCCTCGGGCACCCTCCCCACCGTGTGTCAGAC  497

seq1  CTCCAGGCTGAGTAAATGGAGTGGCTTTTTTCTTTTTTTTTTTTCTCTGC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCTGAGTAAATGGAGTGGCTTTTTTCTTTTTTTTTTTTCTCTGC  547

seq1  TCCTTTCTCCTCCTCCTCTCAACAGCTCCGCTGAGTCTCACAGCTTGTCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCCTCCTCCTCTCAACAGCTCCGCTGAGTCTCACAGCTTGTCT  597

seq1  GTTCGGGAGGTTTTTCTTTTAAAATTGTAATACAATTGTGTGGAGCTTAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGGAGGTTTTTCTTTTAAAATTGTAATACAATTGTGTGGAGCTTAA  647

seq1  AAAAAAAAAAGGAAACGAAGCAAATAGTATGGAGATTTCTAAAGAATTAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGGAAACGAAGCAAATAGTATGGAGATTTCTAAAGAATTAA  697

seq1  AAGATGGAGTTAGCTGGTGACTCAGAGAGCCCTCCTCTTCCGACACATTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAGTTAGCTGGTGACTCAGAGAGCCCTCCTCTTCCGACACATTC  747

seq1  CATGCAAAGCAAAGGCAACCACCTCCTCCTAGAATGCCTGGACTCCGGCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAGCAAAGGCAACCACCTCCTCCTAGAATGCCTGGACTCCGGCT  797

seq1  ACAGAGATGGCTCAGCAGTTAGGAGTTTGCTGCTCTTGCAGAAGACCCAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATGGCTCAGCAGTTAGGAGTTTGCTGCTCTTGCAGAAGACCCAG  847

seq1  GGTTGGTTCCGAGCACCCACACGGCGGCTCACAACTGTCTGTAATTTCAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTCCGAGCACCCACACGGCGGCTCACAACTGTCTGTAATTTCAG  897

seq1  TTCCAGGAATCTGACACCCTCTTTTGGCCTTCAAGTGCACAGTTTGCACT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAATCTGACACCCTCTTTTGGCCTTCAAGTGCACAGTTTGCACT  947

seq1  TGAGGCATGTTCGTTCGTGCAGAGAAACACTTGGAGACTGAGTTAGTCTC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATGTTCGTTCGTGCAGAGAAACACTTGGAGACTGAGTTAGTCTC  997

seq1  AGTCTGGTCTACATAGTGAATTC  1012
      |||||||||||||||||||||||
seq2  AGTCTGGTCTACATAGTGAATTC  1020