BAC Information

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BAC

Clone NameB6Ng01-130H08
Chromosome4 (Build37)
Map Location 131,674,869 - 131,818,602
singlet/doubletdoublet
Overlap geneOprd1, LOC664894, Ythdf2, LOC664903, Gmeb1
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835
Downstream geneRnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130H08.bB6Ng01-130H08.g
ACCDH931765DH931766
length524699
definitionDH931765|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H08, 5' end.DH931766|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,674,869 - 131,675,398)(131,817,906 - 131,818,602)
sequence
ctggtgtatcaggttatagctggagagctctaagagtggagaaagtgact
ttctgaaagcagagaccaactgtagggtgtggaagggaaagtgtgcaccc
attatcattaacctagcactcaggaagctgaaacaggagcattacaaatt
tgagtctagcctcagcttcatcttgagaccctgtcttggaaagacaaaaa
aataaatccttgggtatgttggtacacacctgtaattccagctcatcata
cttccaaaggtaacggggaactctttgtttttgaaaaagaatccttctac
atagccctggctgtcctagaactctttatgtagaccagactaatctctaa
cagaaacctgcctatctttgcctcctaggtgctgggattaaaggcatgca
tgctcccacaaagcccagctggccaaactatctgttaacgtttttttcct
ccaggatggatcagaggtttgggttttttgtggttggttttgtttgttag
aaaagaggagaaggaggaggaaga
gaattccaggacagccagggctacacagaaaaccctgtctcaattaaaaa
aaaaaaaaaaaaaaaaatcactatgtaggttcgagtggtggaactcaggt
ggtcaggagcctgcacccaacgtgccatctctacacacacacacacacac
agcccacaacctgccctttggaagcaaagaagacagatacaacacaatgt
ctataggaagaaagatgggaaataacccttgtgggtcttctgcacgtgtt
ctacctaccgacctacttccctcctcacacccctcatctctacgtttggc
ttgctttttttttttgagacaaggtctcattatgtagccacagctggcct
agaacccactatgtagaccaggctagacaggaattgtggaattaaaagcg
tgtaccaccagcacgtgccgacgttcctgtttaactttcaaagatgagaa
tgaaagagtaaggtggctctgaggaatttataaaccaaaagcatctaacc
ccaaggcctgaccacattgccttaaagcttgtcagttactattccccggc
ctcagaaacttgcccaagtactttttcaagtatcatttcattgtacatga
acgacatgtacctttcgggaaataggtggcttagagttgtcaagtcactg
cacagttgttgtaccggtcccaaggaagttcaaatttgtaactccgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131674869_131675398
seq2: B6Ng01-130H08.b_48_577

seq1  GAATTCCTGGTGTATCAGGTTATAGCTGGAGAGCTCTAAGAGTGGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTGTATCAGGTTATAGCTGGAGAGCTCTAAGAGTGGAGAAA  50

seq1  GTGACTTTCTGAAAGCAGAGACCAACTGTAGGGTGTGGAAGGGAAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTCTGAAAGCAGAGACCAACTGTAGGGTGTGGAAGGGAAAGTGT  100

seq1  GCACCCATTATCATTAACCTAGCACTCAGGAAGCTGAAACAGGAGCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATTATCATTAACCTAGCACTCAGGAAGCTGAAACAGGAGCATTA  150

seq1  CAAATTTGAGTCTAGCCTCAGCTTCATCTTGAGACCCTGTCTTGGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGAGTCTAGCCTCAGCTTCATCTTGAGACCCTGTCTTGGAAAGA  200

seq1  CAAAAAAATAAATCCTTGGGTATGTTGGTACACACCTGTAATTCCAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATAAATCCTTGGGTATGTTGGTACACACCTGTAATTCCAGCTC  250

seq1  ATCATACTTCCAAAGGTAACGGGGAACTCTTTGTTTTTGAAAAAGAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTTCCAAAGGTAACGGGGAACTCTTTGTTTTTGAAAAAGAATCC  300

seq1  TTCTACATAGCCCTGGCTGTCCTAGAACTCTTTATGTAGACCAGACTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATAGCCCTGGCTGTCCTAGAACTCTTTATGTAGACCAGACTAAT  350

seq1  CTCTAACAGAAACCTGCCTATCTTTGCCTCCTAGGTGCTGGGATTAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACAGAAACCTGCCTATCTTTGCCTCCTAGGTGCTGGGATTAAAGG  400

seq1  CATGCATGCTCCCACAAAGCCCAGCTGGCCAAACTATCTGTTAACGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGCTCCCACAAAGCCCAGCTGGCCAAACTATCTGTTAACGTTTT  450

seq1  TTTCCTCCAGGATGGATCAGAGGTTTGGGTTTTTTGTGGTTGGTTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCAGGATGGATCAGAGGTTTGGGTTTTTTGTGGTTGGTTTTGTT  500

seq1  TGTTAGAAAAGAGGAGAAGGAGGAGGAAGA  530
      ||||||||||||||||||||||||||||||
seq2  TGTTAGAAAAGAGGAGAAGGAGGAGGAAGA  530

seq1: chr4_131817906_131818602
seq2: B6Ng01-130H08.g_69_767 (reverse)

seq1  GTTCGGAGTT-CAAATTTGAACTTCCTTGGAACCGGTACAACAACTGTGC  49
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  GTTCGGAGTTACAAATTTGAACTTCCTTGGGACCGGTACAACAACTGTGC  50

seq1  AGTGACTTGACAACTCTAAGCCACCTATTTCCCGAAAGGTACATGTCGTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTGACAACTCTAAGCCACCTATTTCCCGAAAGGTACATGTCGTT  100

seq1  CATGTACAATGAAATGATACTTG-AAAAGTACTTGGGCAAGTTTCTGAGG  148
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATGTACAATGAAATGATACTTGAAAAAGTACTTGGGCAAGTTTCTGAGG  150

seq1  CCGGGGAATAGTAACTGACAAGCTTTAAGGCAATGTGGTCAGGCCTTGGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGAATAGTAACTGACAAGCTTTAAGGCAATGTGGTCAGGCCTTGGG  200

seq1  GTTAGATGCTTTTGGTTTATAAATTCCTCAGAGCCACCTTACTCTTTCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATGCTTTTGGTTTATAAATTCCTCAGAGCCACCTTACTCTTTCAT  250

seq1  TCTCATCTTTGAAAGTTAAACAGGAACGTCGGCACGTGCTGGTGGTACAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTTTGAAAGTTAAACAGGAACGTCGGCACGTGCTGGTGGTACAC  300

seq1  GCTTTTAATTCCACAATTCCTGTCTAGCCTGGTCTACATAGTGGGTTCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAATTCCACAATTCCTGTCTAGCCTGGTCTACATAGTGGGTTCTA  350

seq1  GGCCAGCTGTGGCTACATAATGAGACCTTGTCTCAAAAAAAAAAAGCAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTGTGGCTACATAATGAGACCTTGTCTCAAAAAAAAAAAGCAAG  400

seq1  CCAAACGTAGAGATGAGGGGTGTGAGGAGGGAAGTAGGTCGGTAGGTAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGTAGAGATGAGGGGTGTGAGGAGGGAAGTAGGTCGGTAGGTAGA  450

seq1  ACACGTGCAGAAGACCCACAAGGGTTATTTCCCATCTTTCTTCCTATAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGCAGAAGACCCACAAGGGTTATTTCCCATCTTTCTTCCTATAGA  500

seq1  CATTGTGTTGTATCTGTCTTCTTTGCTTCCAAAGGGCAGGTTGTGGGCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTTGTATCTGTCTTCTTTGCTTCCAAAGGGCAGGTTGTGGGCTG  550

seq1  TGTGTGTGTGTGTGTGTAGAGATGGCACGTTGGGTGCAGGCTCCTGACCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTAGAGATGGCACGTTGGGTGCAGGCTCCTGACCA  600

seq1  CCTGAGTTCCACCACTCGAACCTACATAGTGATTTTTTTTTTTTTTTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCCACCACTCGAACCTACATAGTGATTTTTTTTTTTTTTTTTT  650

seq1  TTTTAATTGAGACAGGGTTTTCTGTGTAGCCCTGGCTGTCCTGGAATTC  697
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGAGACAGGGTTTTCTGTGTAGCCCTGGCTGTCCTGGAATTC  699