BAC Information

Click to search

BAC

Clone NameB6Ng01-131D19
Chromosome4 (Build37)
Map Location 58,589,398 - 58,713,662
singlet/doubletdoublet
Overlap geneLOC675306, LOC433711
Upstream genePalm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2
Downstream geneOlfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131D19.bB6Ng01-131D19.g
ACCDH932345DH932346
length1,1551,147
definitionDH932345|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D19, 5' end.DH932346|Mus musculus domesticus DNA, BAC clone: B6Ng01-131D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,589,398 - 58,590,564)(58,712,514 - 58,713,662)
sequence
gaattctcatagatttgaaatattattgctaaaaaaattaaaacaaaatt
gataagtggcaaagtggaccctgcaggaaaccaaacgaatacatgcatta
cctcatgtctcagacaaagtataaccacggcagtgctatgataggatcac
atgatgggatcatatccagtgtgttaggtaacatgggttgaaatcatagc
ccatttctctttggctattgaacttgtgccgcatcaggcattctttctag
ggtcccatgctagtagctgatttcctcattggtaacgtgatttaagattg
ccatcagtatcaaacactgctttagcatttgcaaaacttctgagtgtctg
gcacaaaactctcacatttgtagtttcaggacaaaaagcaatggaaacat
ctagaaaaggtgtcagggaaacagcacccccagagcttctgtgctgcttc
ctaaacctaggagaagccagggctacacaggctcaaagcgataccccagc
aaagcaacagagctacaaagtagcgcaaagggagtggctaggaagatgga
aggctttcccctttgtatgtgcctcacaagagaaccccttgctcttcaca
gcagctcacagtcatttatttgtccctgtctcttaagactctccttttat
tttgttctgctgaggttttgtagatattttagggaggcactctgagtctg
cttggtggagacttgctataggcaggtagccttgttattggcatctaaca
gtgaaaagatacagatgagtttaggtggcccaacacctcccacaatcctc
ctcattctatctctccagcattcatttctctattaccatgcagtaagttg
tattcattcgttcagttaacagtgctacgtgcaggttgaggccagggcat
agcacataggaggcattctgctactgacctgcatctccagtctacatggt
gggattaagactgacaagagacttgggcacttagataccacttttggcta
cttgatcaagccttagcggcaactcagggctctctttattttttttgttt
attttccttttttttcaccttgcctcgtcggccagggactttccaggcac
actgcatggcttaaagtctttgagagcccctctgtcaatccttacctccc
ttttc
gaattcactctgtagactaggctcgcctcgaactccgaaatctgcctgcc
tctgcttcctgagtgctgggattaaaggtgtgcgccaacacacccggcta
ataaaatacatcttaacaaatgatagtatagatacttaaatattgacaaa
agagttgtcccaaatacgttaagagcaaaagacaatatataaagcacttt
atattaatgatggagcttttaagtaaacagttatagtgagatttgcatat
tagataacagtagttatctggggaggtcattgttgtctctggatgatagc
tgaagaattttctctttcaagttaattataaattatgcttttctagaatg
aagattgtcagtgatatattacaaagaaacttctttctgcagcccttcta
tgagcctgcatcagtgcacattgctgtcttatctccacgtgcccttaata
tgaagattcatttctcaggatccattgccaggggtggctgggtaatctac
tactgcctttgttaaagtttattttgtaagtagctggggttgtacattga
tttttctctagttgaaaaaaaatatgttagtcaaaggtatgggctactcc
ttctgatgtcaagaaatatcatggctgatattttgtatagttcactttta
ttatttcatcttattttcttccaatcttagtttatctttctttttattgg
tttctcctgtaattccacctttatctgtttactctaacaaaaattctcgg
taggctgagtgggtcatagtggtagtacctgttacccaccagctccaggt
gccgaggcaggagaatcataagtccacattggactacatattggatcctg
tctcaaaagagaaaataaaagaaacaaaagccaagcaaacagtaaggagc
acagcaataacaataacaaagagagtccgctttactctctatgagcatct
cctttcgaatacttctgtgaataaagtatgatttagaagtgagcacttga
ggctgaagagttgactcagctgctcctcagaggattggagttagttcctc
agcacttacatctggtgcttcataaccgcctataactccagttctaaggg
aatccagatgcctctatggctctgcggaatacttgtcacgcatgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58589398_58590564
seq2: B6Ng01-131D19.b_44_1198

seq1  GAATTCTCATAGATTTGAAATATTATTGCTAAAAAAATTAAAACAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAGATTTGAAATATTATTGCTAAAAAAATTAAAACAAAATT  50

seq1  GATAAGTGGCAAAGTGGACCCTGCAGGAAACCAAACGAATACATGCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTGGCAAAGTGGACCCTGCAGGAAACCAAACGAATACATGCATTA  100

seq1  CCTCATGTCTCAGACAAAGTATAACCACGGCAGTGCTATGATAGGATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTCTCAGACAAAGTATAACCACGGCAGTGCTATGATAGGATCAC  150

seq1  ATGATGGGATCATATCCAGTGTGTTAGGTAACATGGGTTGAAATCATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGATCATATCCAGTGTGTTAGGTAACATGGGTTGAAATCATAGC  200

seq1  CCATTTCTCTTTGGCTATTGAACTTGTGCCGCATCAGGCATTCTTTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCTTTGGCTATTGAACTTGTGCCGCATCAGGCATTCTTTCTAG  250

seq1  GGTCCCATGCTAGTAGCTGATTTCCTCATTGGTAACGTGATTTAAGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCATGCTAGTAGCTGATTTCCTCATTGGTAACGTGATTTAAGATTG  300

seq1  CCATCAGTATCAAACACTGCTTTAGCATTTGCAAAACTTCTGAGTGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTATCAAACACTGCTTTAGCATTTGCAAAACTTCTGAGTGTCTG  350

seq1  GCACAAAACTCTCACATTTGTAGTTTCAGGACAAAAAGCAATGGAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAACTCTCACATTTGTAGTTTCAGGACAAAAAGCAATGGAAACAT  400

seq1  CTAGAAAAGGTGTCAGGGAAACAGCACCCCCAGAGCTTCTGTGCTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAGGTGTCAGGGAAACAGCACCCCCAGAGCTTCTGTGCTGCTTC  450

seq1  CTAAACCTAGGAGAAGCCAGGGCTACACAGGCTCAAAGCGATACCCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCTAGGAGAAGCCAGGGCTACACAGGCTCAAAGCGATACCCCAGC  500

seq1  AAAGCAACAGAGCTACAAAGTAGCGCAAAGGGAGTGGCTAGGAAGATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACAGAGCTACAAAGTAGCGCAAAGGGAGTGGCTAGGAAGATGGA  550

seq1  AGGCTTTCCCCTTTGTATGTGCCTCACAAGAGAACCCCTTGCTCTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTCCCCTTTGTATGTGCCTCACAAGAGAACCCCTTGCTCTTCACA  600

seq1  GCAGCTCACAGTCATTTATTTGTCCCTGTCTCTTAAGACTCTCCTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCACAGTCATTTATTTGTCCCTGTCTCTTAAGACTCTCCTTTTAT  650

seq1  TTTGTTCTGCTGAGGTTTTGTAGATATTTTAGGGAGGCACTCTGAGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGCTGAGGTTTTGTAGATATTTTAGGGAGGCACTCTGAGTCTG  700

seq1  CTTGGTGGAGACTTGCTATAGGCAGGTAGCCTTGTTATTGGCATCTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGAGACTTGCTATAGGCAGGTAGCCTTGTTATTGGCATCTAACA  750

seq1  GTGAAAAGATACAGATGAGTTTAGGTGGCCCAACACCTCCCACAATCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGATACAGATGAGTTTAGGTGGCCCAACACCTCCCACAATCCTC  800

seq1  CTCATTCTATCTCTCCAGCATTCATTTCTCTATTACCATGCAGTAAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTATCTCTCCAGCATTCATTTCTCTATTACCATGCAGTAAGTTG  850

seq1  TATTCATTCGTTCAGTTAACAGTGCTACGTGCAGGTTGAGGCCAGGGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCGTTCAGTTAACAGTGCTACGTGCAGGTTGAGGCCAGGGCAT  900

seq1  AGCACATAGGAGGCATTCTGCTACTGACCTGCATCTCCAGTCTACATGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATAGGAGGCATTCTGCTACTGACCTGCATCTCCAGTCTACATGGT  950

seq1  GGGAATCAGGACTGACAAGAGACTTGGGCACTTAGATACCACTTTTGGCT  1000
      ||| || | |||||||||||||||||||||||||||||||||||||||||
seq2  GGG-ATTAAGACTGACAAGAGACTTGGGCACTTAGATACCACTTTTGGCT  999

seq1  ACTTTGATCAAAGCCTTAGCGGCAACTCAGTGGTCTCTCTTTTTTTTTTT  1050
      || |||||| |||||||||||||||||||| | ||||        ||| |
seq2  AC-TTGATC-AAGCCTTAGCGGCAACTCAGGGCTCTC--------TTTAT  1039

seq1  TTTTTTTTTTTTTTTTCTTTTTTTTTCTACTCTTGCCTCTGTCTGCTCTG  1100
      ||||||| ||| ||||| ||||||||| || |||||||| ||| || | |
seq2  TTTTTTTGTTTATTTTCCTTTTTTTTC-AC-CTTGCCTC-GTCGGC-CAG  1085

seq1  GGACTTTCCCAGGCACACTGCATG--CTGAAGCCCTT-AGCAGCCCTCTG  1147
      ||||||| ||||||||||||||||   | ||| | || ||   |||||||
seq2  GGACTTT-CCAGGCACACTGCATGGCTTAAAGTCTTTGAGAGCCCCTCTG  1134

seq1  TCAATCCTCACCT-CCTTTTC  1167
      |||||||| |||| |||||||
seq2  TCAATCCTTACCTCCCTTTTC  1155

seq1: chr4_58712514_58713662
seq2: B6Ng01-131D19.g_67_1213 (reverse)

seq1  GCACATGCGTG-CAGGTA-TCCGCAGAGGCCATAGAGGGCATCT-GATTC  47
      ||||||||||| || ||| |||||||| |||||||| ||||||| |||||
seq2  GCACATGCGTGACAAGTATTCCGCAGA-GCCATAGA-GGCATCTGGATTC  48

seq1  CCTTGAGAACTGGAGTTATAGGCGGTTATGAAGCA-CAGATGTAGGTGCT  96
      |||| |||||||||||||||||||||||||||||| |||||||| |||||
seq2  CCTT-AGAACTGGAGTTATAGGCGGTTATGAAGCACCAGATGTAAGTGCT  97

seq1  GA-GAACTAACTCCAATCCTCTGGGAGAGCAGCTGAGTCACCTCTTCAGC  145
      || |||||||||||||||||||| | |||||||||||||| |||||||||
seq2  GAGGAACTAACTCCAATCCTCTGAG-GAGCAGCTGAGTCAACTCTTCAGC  146

seq1  CTCAAGTTGCTCACTTTCTAAATCATACTTTATTCACAGAAGTATTTCGA  195
      |||||| ||||||| ||||||||||||||||||||||||||||| |||||
seq2  CTCAAG-TGCTCAC-TTCTAAATCATACTTTATTCACAGAAGTA-TTCGA  193

seq1  AAGGAGATGCTCATAGAGAGTAAAGCGGACTCTCTTTGTTATTGTTATTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATGCTCATAGAGAGTAAAGCGGACTCTCTTTGTTATTGTTATTG  243

seq1  CTGTGCTCCTTACTGTTTGCTTGGCTTTTGTTTCTTTTATTTTCTCTTTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCCTTACTGTTTGCTTGGCTTTTGTTTCTTTTATTTTCTCTTTT  293

seq1  GAGACAGGATCCATTATGTAGTCCAATGTGGACTTATGATTCTCCTGCCT  345
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGATCCAATATGTAGTCCAATGTGGACTTATGATTCTCCTGCCT  343

seq1  CGGCACCTGGAGCTGGTGGGTAACAGGTACTACCACTATGACCCACTCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACCTGGAGCTGGTGGGTAACAGGTACTACCACTATGACCCACTCAG  393

seq1  CCTACCGAGAATTTTTGTTAGAGTAAACAGATAAAGGTGGAATTACAGGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCGAGAATTTTTGTTAGAGTAAACAGATAAAGGTGGAATTACAGGA  443

seq1  GAAACCAATAAAAAGAAAGATAAACTAAGATTGGAAGAAAATAAGATGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAATAAAAAGAAAGATAAACTAAGATTGGAAGAAAATAAGATGAA  493

seq1  ATAATAAAAGTGAACTATACAAAATATCAGCCATGATATTTCTTGACATC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAAGTGAACTATACAAAATATCAGCCATGATATTTCTTGACATC  543

seq1  AGAAGGAGTAGCCCATACCTTTGACTAACATATTTTTTTTCAACTAGAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGTAGCCCATACCTTTGACTAACATATTTTTTTTCAACTAGAGA  593

seq1  AAAATCAATGTACAACCCCAGCTACTTACAAAATAAACTTTAACAAAGGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAATGTACAACCCCAGCTACTTACAAAATAAACTTTAACAAAGGC  643

seq1  AGTAGTAGATTACCCAGCCACCCCTGGCAATGGATCCTGAGAAATGAATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGATTACCCAGCCACCCCTGGCAATGGATCCTGAGAAATGAATC  693

seq1  TTCATATTAAGGGCACGTGGAGATAAGACAGCAATGTGCACTGATGCAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTAAGGGCACGTGGAGATAAGACAGCAATGTGCACTGATGCAGG  743

seq1  CTCATAGAAGGGCTGCAGAAAGAAGTTTCTTTGTAATATATCACTGACAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGAAGGGCTGCAGAAAGAAGTTTCTTTGTAATATATCACTGACAA  793

seq1  TCTTCATTCTAGAAAAGCATAATTTATAATTAACTTGAAAGAGAAAATTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTCTAGAAAAGCATAATTTATAATTAACTTGAAAGAGAAAATTC  843

seq1  TTCAGCTATCATCCAGAGACAACAATGACCTCCCCAGATAACTACTGTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTATCATCCAGAGACAACAATGACCTCCCCAGATAACTACTGTTA  893

seq1  TCTAATATGCAAATCTCACTATAACTGTTTACTTAAAAGCTCCATCATTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATGCAAATCTCACTATAACTGTTTACTTAAAAGCTCCATCATTA  943

seq1  ATATAAAGTGCTTTATATATTGTCTTTTGCTCTTAACGTATTTGGGACAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGTGCTTTATATATTGTCTTTTGCTCTTAACGTATTTGGGACAA  993

seq1  CTCTTTTGTCAATATTTAAGTATCTATACTATCATTTGTTAAGATGTATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGTCAATATTTAAGTATCTATACTATCATTTGTTAAGATGTATT  1043

seq1  TTATTAGCCGGGTGTGTTGGCGCACACCTTTAATCCCAGCACTCAGGAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGCCGGGTGTGTTGGCGCACACCTTTAATCCCAGCACTCAGGAAG  1093

seq1  CAGAGGCAGGCAGATTTCGGAGTTCGAGGCGAGCCTAGTCTACAGAGTGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCAGATTTCGGAGTTCGAGGCGAGCCTAGTCTACAGAGTGA  1143

seq1  ATTC  1149
      ||||
seq2  ATTC  1147