BAC Information

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BAC

Clone NameB6Ng01-133K13
Chromosome4 (Build37)
Map Location 128,839,254 - 129,046,190
singlet/doubletdoublet
Overlap geneS100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik
Upstream gene4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5
Downstream geneLOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133K13.bB6Ng01-133K13.g
ACCDH934150DH934151
length746230
definitionDH934150|Mus musculus domesticus DNA, BAC clone: B6Ng01-133K13, 5' end.DH934151|Mus musculus domesticus DNA, BAC clone: B6Ng01-133K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,045,445 - 129,046,190)(128,839,254 - 128,839,483)
sequence
gaattcacctgggagcgtctggaaaagcagccgtgttcttaaccgctgat
tcatctctccagcccctcatatctcattgatgttatacctcattttaaaa
tatatataaaaagctggtgggggcggtgcactcctttaatcccagcactc
aggtggatctctttgtgtttgaggccaccctgtctacagagtgagttcca
ggacagccacgtttacacagagatacgtctcaaaacaaagcagaattttg
caactgtgtattttatgtgatttattgtgttcccactccctgtatgaaat
gttcatcactctgatggtcttggtcagtcctctctgctcacttttttttc
ctttttttcttcttgtgtacctttgtgcacgttgcttgtgtatgaatgtg
ggcacgcatgaggaggtcagaagacagcttttttgggtgttggtcctcat
cttccaccttgcttgagacagggtctcttgtttgctgcttctgtgtatca
ggcttgtgggccccatgtttctggggtgtcttctgactctgcctcccatt
ccactagagcaacactggggttgttgctggggaaactaaggatcccttat
ggatccttagtctccttaatacagttatttaaaaatagattcagaaggaa
atttgaggaccattttgttagaactgggaacaaaaacaacggagtaagca
agctgtaaaccttggcagctgccaggaggggagtagtggggaggga
catcaatgtatcctctctgcaggtgatgcctttgtttttgctggcctttg
tatagagaggccattaaaagcctgcatccagcacttcagaggcagaagca
ggcagatctctgagtttcaagccacccaggtatacagagtgagtattagg
acaaccaggactacacaatgaaaccctgtctcgaaaaaacaagagagagg
agaggaagagaggagaagagggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129045445_129046190
seq2: B6Ng01-133K13.b_48_793 (reverse)

seq1  TCCCTCCCCACTACTCCCCTCCTGGCAGCTGCCAAGGTTTACAGCTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCACTACTCCCCTCCTGGCAGCTGCCAAGGTTTACAGCTTGCT  50

seq1  TACTCCGTTGTTTTTGTTCCCAGTTCTAACAAAATGGTCCTCAAATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCGTTGTTTTTGTTCCCAGTTCTAACAAAATGGTCCTCAAATTTCC  100

seq1  TTCTGAATCTATTTTTAAATAACTGTATTAAGGAGACTAAGGATCCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATCTATTTTTAAATAACTGTATTAAGGAGACTAAGGATCCATAA  150

seq1  GGGATCCTTAGTTTCCCCAGCAACAACCCCAGTGTTGCTCTAGTGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCTTAGTTTCCCCAGCAACAACCCCAGTGTTGCTCTAGTGGAATG  200

seq1  GGAGGCAGAGTCAGAAGACACCCCAGAAACATGGGGCCCACAAGCCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGTCAGAAGACACCCCAGAAACATGGGGCCCACAAGCCTGAT  250

seq1  ACACAGAAGCAGCAAACAAGAGACCCTGTCTCAAGCAAGGTGGAAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAGCAGCAAACAAGAGACCCTGTCTCAAGCAAGGTGGAAGATGA  300

seq1  GGACCAACACCCAAAAAAGCTGTCTTCTGACCTCCTCATGCGTGCCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAACACCCAAAAAAGCTGTCTTCTGACCTCCTCATGCGTGCCCACA  350

seq1  TTCATACACAAGCAACGTGCACAAAGGTACACAAGAAGAAAAAAAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACACAAGCAACGTGCACAAAGGTACACAAGAAGAAAAAAAGGAAA  400

seq1  AAAAAGTGAGCAGAGAGGACTGACCAAGACCATCAGAGTGATGAACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGAGCAGAGAGGACTGACCAAGACCATCAGAGTGATGAACATTT  450

seq1  CATACAGGGAGTGGGAACACAATAAATCACATAAAATACACAGTTGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGGAGTGGGAACACAATAAATCACATAAAATACACAGTTGCAAA  500

seq1  ATTCTGCTTTGTTTTGAGACGTATCTCTGTGTAAACGTGGCTGTCCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTTTGTTTTGAGACGTATCTCTGTGTAAACGTGGCTGTCCTGGA  550

seq1  ACTCACTCTGTAGACAGGGTGGCCTCAAACACAAAGAGATCCACCTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGTAGACAGGGTGGCCTCAAACACAAAGAGATCCACCTGAGT  600

seq1  GCTGGGATTAAAGGAGTGCACCGCCCCCACCAGCTTTTTATATATATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGAGTGCACCGCCCCCACCAGCTTTTTATATATATTTT  650

seq1  AAAATGAGGTATAACATCAATGAGATATGAGGGGCTGGAGAGATGAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGGTATAACATCAATGAGATATGAGGGGCTGGAGAGATGAATCA  700

seq1  GCGGTTAAGAACACGGCTGCTTTTCCAGACGCTCCCAGGTGAATTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTAAGAACACGGCTGCTTTTCCAGACGCTCCCAGGTGAATTC  746

seq1: chr4_128839254_128839483
seq2: B6Ng01-133K13.g_75_304

seq1  CATCAATGTATCCTCTCTGCAGGTGATGCCTTTGTTTTTGCTGGCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGTATCCTCTCTGCAGGTGATGCCTTTGTTTTTGCTGGCCTTTG  50

seq1  TATAGAGAGGCCATTAAAAGCCTGCATCCAGCACTTCAGAGGCAGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGAGGCCATTAAAAGCCTGCATCCAGCACTTCAGAGGCAGAAGCA  100

seq1  GGCAGATCTCTGAGTTTCAAGCCACCCAGGTATACAGAGTGAGTATTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCTCTGAGTTTCAAGCCACCCAGGTATACAGAGTGAGTATTAGG  150

seq1  ACAACCAGGACTACACAATGAAACCCTGTCTCGAAAAAACAAGAGAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGGACTACACAATGAAACCCTGTCTCGAAAAAACAAGAGAGAGG  200

seq1  AGAGGAAGAGAGGAGAAGAGGGGGAGGGGA  230
      ||||||||||||||||||||||||||||||
seq2  AGAGGAAGAGAGGAGAAGAGGGGGAGGGGA  230