BAC Information

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BAC

Clone NameB6Ng01-134E24
Chromosome4 (Build37)
Map Location 12,556,212 - 12,697,629
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134E24.bB6Ng01-134E24.g
ACCDH934641DH934642
length5401,114
definitionDH934641|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E24, 5' end.DH934642|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,697,114 - 12,697,629)(12,556,212 - 12,557,345)
sequence
gaattctgaaaccttcctaattttatgcatgtattattagaccattgcca
ggattgtagttatcgccttacttcatatagtgcctcttttggcaaacttt
aagtaaccacattgatgttaatctccacagtttgagaaagcagatgcagc
acatgtgtgtgaaatgagctccatgtgttcaacttttcaacgcaacctct
tttctttaaccagaattatcattaatagtataagtagccccacatcctgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtaataggaatgatttaagatagc
tgaaaagaagttcattttagcttttttttggggggggggacagttataat
taacgcattataagactagactgggaaactgaaaattgcattctgagttg
aggaaaattttctctgtagctctgccgcctccccattgcacgtacttcgt
acatttcgcttgcttactttctttcttccggcctgacttccttccttcct
tccttccctgcttcctatatttggtactctcctccttcct
gaattcttgtttattcctaaatggctgtcacaagacctattcatcaaatg
cttaaagggagagaggggcttacagaagccagtctcaagttcagcaccgt
taaataatcattaggtttctgagttggtcttgagacccactgcaaatgca
caaagctggcgtctttttcactttttaaactattcatcacaattgcattt
agatgagattctgacctgataaagggaagggggggtgctttttgtcacta
tcagtttcatgctgtgttctttctcttttgagggttttttttttttaaca
aaagtaaaagaaaataaaggcagatggccaactcttttcaatatccgttt
gctttatttgagcagtttaatgtagtgaaacagagtgaaatgttgctact
tgctaaatggtaaacaacaccattacccagaatcctgctgtacattggta
caaaatagggtgctggtgattaattaatctgttgttgtgattgtaatgca
tgacacataatagatagtgtgccatgtattttaaaagcagcaaattagca
aataataactcttctgcataagaccgtctccatggtgtacccctaatgca
taaataatcaaaaaagaaaaggccattatgccactatccaaagaaaccca
tgtgtctggtgttcaccagtctgtgaacatgtgctaggaaactctacaca
caaggtggctgtgggccaggtcagatgcccctgaagtctccacagaagag
cttttgatgtctactaagttagagcattcaagttcccaggaacaaccatg
caggcagggatctatgtatggatttagtgcactttcttaggaaatcagcc
tagtttacagaaatccctgtgcaaacagctagaaaacacaaaagaccatc
tctaaaatgccagggttgggttttgtctaggttttcttgtggcatcatct
caagtctctacttgccctttactaagtttgaagaatggggaaagccccaa
agccacgtatgttattagctgtttgtgttgtgtttgttcatattaaaact
ctgactcaacagtcacagacagtggatttgctttgccaggcttgagaagg
atagattataatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12697114_12697629
seq2: B6Ng01-134E24.b_44_583 (reverse)

seq1  ------------------------AGGAAGGAAGGAAGGAAGGAAGGAAG  26
                              |||||| | |||||||||||||||||
seq2  AGGAAGGAGGAGAGTACCAAATATAGGAAGCAGGGAAGGAAGGAAGGAAG  50

seq1  GAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAGAAAGGAAGGAAGGACA  76
      ||||  |||  ||||||||||||| ||| ||| |||| | | |||| || 
seq2  GAAGTCAGGCCGGAAGAAAGAAAGTAAGCAAGCGAAATGTACGAAGTACG  100

seq1  GGCAATGGAGAGGCAGCAGAGTTGCAGAGAAAATCTGCCTCAATTCAGAA  126
       ||||||| ||||| |||||| | |||||||||| | |||||| ||||||
seq2  TGCAATGGGGAGGCGGCAGAGCTACAGAGAAAATTTTCCTCAACTCAGAA  150

seq1  TGGAATTTTCAGTTTCCCAGTCTAGTCTTATTATGCATTAATTATAACTG  176
      || |||||||||||||||||||||||||||| |||| |||||||||||||
seq2  TGCAATTTTCAGTTTCCCAGTCTAGTCTTATAATGCGTTAATTATAACTG  200

seq1  TCCCCCCCCCCAAAAAAAAGCTAAAATGAACTTCTTTTCAGCTATCTTAA  226
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCAAAAAAAAGCTAAAATGAACTTCTTTTCAGCTATCTTAA  250

seq1  ATCATTCCTATTACACACACACACACACACACACACACACACAGGATGTG  276
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCCTATTACACACACACACACACACACACACACACACAGGATGTG  300

seq1  GGGCTACTTATACTATTAATGATAATTCTGGTTAAAGAAAAGAGGTTGCG  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACTTATACTATTAATGATAATTCTGGTTAAAGAAAAGAGGTTGCG  350

seq1  TTGAAAAGTTGAACACATGGAGCTCATTTCACACACATGTGCTGCATCTG  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGTTGAACACATGGAGCTCATTTCACACACATGTGCTGCATCTG  400

seq1  CTTTCTCAAACTGTGGAGATTAACATCAATGTGGTTACTTAAAGTTTGCC  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAAACTGTGGAGATTAACATCAATGTGGTTACTTAAAGTTTGCC  450

seq1  AAAAGAGGCACTATATGAAGTAAGGCGATAACTACAATCCTGGCAATGGT  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGCACTATATGAAGTAAGGCGATAACTACAATCCTGGCAATGGT  500

seq1  CTAATAATACATGCATAAAATTAGGAAGGTTTCAGAATTC  516
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATACATGCATAAAATTAGGAAGGTTTCAGAATTC  540

seq1: chr4_12556212_12557345
seq2: B6Ng01-134E24.g_68_1181

seq1  GAATTCTTGTTTATTCCTAAATGGCTGTCACAAGACCTATTCATCAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTATTCCTAAATGGCTGTCACAAGACCTATTCATCAAATG  50

seq1  CTTAAAGGGAGAGAGGGGCTTACAGAAGCCAGTCTCAAGTTCAGCACCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGGAGAGAGGGGCTTACAGAAGCCAGTCTCAAGTTCAGCACCGT  100

seq1  TAAATAATCATTAGGTTTCTGAGTTGGTCTTGAGACCCACTGCAAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCATTAGGTTTCTGAGTTGGTCTTGAGACCCACTGCAAATGCA  150

seq1  CAAAGCTGGCGTCTTTTTCACTTTTTAAACTATTCATCACAATTGCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGGCGTCTTTTTCACTTTTTAAACTATTCATCACAATTGCATTT  200

seq1  AGATGAGATTCTGACCTGATAAAGGGAAGGGGGGGTGCTTTTTGTCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGATTCTGACCTGATAAAGGGAAGGGGGGGTGCTTTTTGTCACTA  250

seq1  TCAGTTTCATGCTGTGTTCTTTCTCTTTTGAGGGTTTTTTTTTTTTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCATGCTGTGTTCTTTCTCTTTTGAGGGTTTTTTTTTTTTAACA  300

seq1  AAAGTAAAAGAAAATAAAGGCAGATGGCCAACTCTTTTCAATATCCGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAAGAAAATAAAGGCAGATGGCCAACTCTTTTCAATATCCGTTT  350

seq1  GCTTTATTTGAGCAGTTTAATGTAGTGAAACAGAGTGAAATGTTGCTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTTGAGCAGTTTAATGTAGTGAAACAGAGTGAAATGTTGCTACT  400

seq1  TGCTAAATGGTAAACAACACCATTACCCAGAATCCTGCTGTACATTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATGGTAAACAACACCATTACCCAGAATCCTGCTGTACATTGGTA  450

seq1  CAAAATAGGGTGCTGGTGATTAATTAATCTGTTGTTGTGATTGTAATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGGGTGCTGGTGATTAATTAATCTGTTGTTGTGATTGTAATGCA  500

seq1  TGACACATAATAGATAGTGTGCCATGTATTTTAAAAGCAGCAAATTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATAATAGATAGTGTGCCATGTATTTTAAAAGCAGCAAATTAGCA  550

seq1  AATAATAACTCTTCTGCATAAGACCGTCTCCATGGTGTACCCCTAATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACTCTTCTGCATAAGACCGTCTCCATGGTGTACCCCTAATGCA  600

seq1  TAAATAATCAAAAAAGAAAAGGCCATTATGCCACTATCCAAAGAAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCAAAAAAGAAAAGGCCATTATGCCACTATCCAAAGAAACCCA  650

seq1  TGTGTCTGGTGTTCACCAGTCTGTGAACATGTGCTAGGAAACTCTACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGGTGTTCACCAGTCTGTGAACATGTGCTAGGAAACTCTACACA  700

seq1  CAAGGTGGCTGTGGGCCAGGTCAGATGCCCCTGAAGTCTCCACAGAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGCTGTGGGCCAGGTCAGATGCCCCTGAAGTCTCCACAGAAGAG  750

seq1  CTTTTGATGTCTACTAAGTTAGAGCATTCAAGTTCCCAGGAACAACCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATGTCTACTAAGTTAGAGCATTCAAGTTCCCAGGAACAACCATG  800

seq1  CAGGCAGGGATCTATGTATGGATTTAGTGCACTTTTCTTAGGAAATCAGC  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGCAGGGATCTATGTATGGATTTAGTGCAC-TTTCTTAGGAAATCAGC  849

seq1  CTAGTTTACAGAAATCCCTGTGCAAACAGCTAGAAAACACAAAAAGACCA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAGTTTACAGAAATCCCTGTGCAAACAGCTAGAAAACAC-AAAAGACCA  898

seq1  TCTCTAAAATGCCAGGGTTGGGTTTTGTCTAGGTTTTCTTTGTGGCAATC  950
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  TCTCTAAAATGCCAGGGTTGGGTTTTGTCTAGGTTTTC-TTGTGGC-ATC  946

seq1  ATTCTCAAGTCCTCTACTTGCCTTTTACTAAAGTTTTGAAAGAATGGGGA  1000
      | |||||||| ||||||||||| |||||| ||||||   |||||||||||
seq2  A-TCTCAAGT-CTCTACTTGCCCTTTACT-AAGTTT--GAAGAATGGGGA  991

seq1  AAGCCCCAAAGCCCACGTATGTTATTAGCTGTTTGTTGTTGTTGTTGTTA  1050
      ||||||||||| ||||||||||||||||||||||| ||||||  ||||  
seq2  AAGCCCCAAAG-CCACGTATGTTATTAGCTGTTTG-TGTTGTGTTTGT--  1037

seq1  TCATAATAAAACACTGACCACAAACAAGTCACAGACAAGTGAGTTTGTTT  1100
      ||||| |||||| |||| | |||   |||||||||| ||||  |||| ||
seq2  TCATATTAAAACTCTGA-CTCAA--CAGTCACAGAC-AGTGGATTTGCTT  1083

seq1  TGGCCCATGGCTTGAGAAGGAGAGTTTATAATGG  1134
      ||  ||| ||||||||||||| || |||||||||
seq2  TG--CCA-GGCTTGAGAAGGATAGATTATAATGG  1114