BAC Information

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BAC

Clone NameB6Ng01-134J07
Chromosome4 (Build37)
Map Location 12,620,681 - 12,782,995
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988, Runx1t1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134J07.bB6Ng01-134J07.g
ACCDH934842DH934843
length1,1731,125
definitionDH934842|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J07, 5' end.DH934843|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,781,813 - 12,782,995)(12,620,681 - 12,621,537)
sequence
gaattcagtgaggctgccatgtttaaattaaatcctaatcagaaaataat
ctgataagataccaatgatgctgctatattatgagattaataaagaattt
aaataaagcatttaaaattgaaataagtggtttatcccagtaaccctctc
tccctctcttctctctccctttttcaatcccacctaaaagcagctttctc
tgtgtgtcttcaactcaaaaccaagcaaaactgcttgaaaccttcccaga
aatttctaagtttaagggagacaagagagctgaattctaacaggtctctt
taacgtccgtgtcagaatggccctgaataggcctagtctcacagaggcca
gccagttgcagggaggaggtaggaatccaaagccacaacctaactcaaga
ccagttggcagttgacggcagctggaggagttccttttcctaggaatgtg
gctgcaggtaggttgttcaagccccagttggtaactcacactcatcctca
tgtagtcagctctaattggactcagtgggctattaataatgatataaata
atgattacatttttttaatgaaatgaactccagaggaaagtgagttggtg
ataccaaggggagttggatgggccagaagctgatggataagaacaagaga
taatgtatacttgtgtggaattttcaaacaataaataaagatattagtta
aaatggagtaagaaaattaatatcactaagaacattctaactctgctata
atgtgcctgaattttgattagctttcttccaatctcaccatggtgagtct
tgatgtcactgtactgtttcaatagtcttagtaagaaaataaaaatgagg
ctcttccacaaccttcacagataactttgtgtgtgtgcgtgcctggaagt
gtgatgtggtgtgtattcatgactgtgtgtgagtgcacgttgttggcatg
tgcagaggccaaagagaacaaagggtgtccgctgtgtctgtctttgcctt
ttctctgacacaggtctctgattagtcttgcagtaggctaatggccagtg
aacacagtatgttgatggctaaaacagctttttttgtgggttctgggaag
gtgacatcattaagcttatggtggatgaaccaatgctcttatatcactga
gcatcctcaggccagtaactttt
gaattctttataactttctgtgctcaaggagaacaacagattaaagaaaa
gattgatgctgaatggaatgctgtgaagaaacatcatgaccgtgcagctt
tttaaaggaaagcatctcattggggcttgctttctgtttcagaggtttag
tccactgtcatcatggtgggaagcttggtggcacgtaggcagacatggta
ctggagaagtagtttgagagttctacatctagattcataggcagcagaaa
gagagagttagtggatatggcttgggctactgaaactcagtgacacaagt
cctctagcagacacacttcctaatctttctcaagtagtgctactccttaa
taactgaacactcaaatatataagcttatgtgagccattcctacgcaaac
caccacagtgaccataacaggtatacagattcagattccccaacatagta
agtacattttaagtacaatagatcttattagttaaagcaagtcatcaatc
aaagtgtttactaatacattgatgagggccataggcaggtgggtggcagc
acagcaggggaaactctgctataagcttctgacaatatctgatgatatta
gcatttgaattggtaaaacgtagtagtatcctaagaatatattgtacggt
ttttatagtcacaagagtgttagatcagaaataagtgggtaatagatagc
ttttaaaagagctaaaaatagtccaagataattagacttctgtagcattt
taaatatcaataatcctcaacttcaatctctttggccttgttgaatgttt
aacattgtacaatgctgcctcccctgcctttatttcctccacattctgag
gatttgagctcacagcttctacttttccccttcatttttaaaaattttgt
tcatactgtttgagtttgcttttaacttctattatctaaagccagaccct
gtaaaagggctttgtgttcccataaacaagaagccttcactttcagctgc
tccacctctgttacactgagatatgatgagtgaaaaagaaacatttacct
ttaatacatgagaccccctcatatttttcccaaatagcctagaaaaggaa
aaaagtgtgactgttcccagtcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12781813_12782995
seq2: B6Ng01-134J07.b_47_1219 (reverse)

seq1  AAAAGTTACTGGGGCTGGAGAGATGGCTCAGTG-GATAAGAGCACTTGTT  49
      ||||||||||  |||  ||| ||| ||||||||  ||||||||| | |||
seq2  AAAAGTTACT--GGCCTGAG-GAT-GCTCAGTGATATAAGAGCATTGGTT  46

seq1  CATCCACCATAAGCCTGATGATGTCACATCTCCAGAACCCACACAAAAAG  99
      |||||||||||||| | |||||||||| |  |||||||||||| ||||||
seq2  CATCCACCATAAGCTTAATGATGTCACCTTCCCAGAACCCACAAAAAAAG  96

seq1  CTGGTTTTAGCCATCAACATACCTGTGTTCACTGGCCATTAGCCTACTGC  149
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CT-GTTTTAGCCATCAACATA-CTGTGTTCACTGGCCATTAGCCTACTGC  144

seq1  AAGACTAATCAGAGACCCTGTGTCAAGAGAAAAAGGCAAAGACAGACACA  199
      ||||||||||||||| |||||||| |||| ||||||||||||||||||||
seq2  AAGACTAATCAGAGA-CCTGTGTC-AGAG-AAAAGGCAAAGACAGACACA  191

seq1  GCGGACACCCTTTGTTCTTCTTTGGCCTCTGCACATGCCAACAACCGTGC  249
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  GCGGACACCCTTTGTTC-TCTTTGGCCTCTGCACATGCCAACAA-CGTGC  239

seq1  ACTCACACACAGTCATGAATACACACCACATCACACTTCCAGGCACGCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACACAGTCATGAATACACACCACATCACACTTCCAGGCACGCAC  289

seq1  ACACACAAAGTTATCTGTGAAGGTTGTGGAAGAGCCTCATTTTTATTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAAGTTATCTGTGAAGGTTGTGGAAGAGCCTCATTTTTATTTTC  339

seq1  TTACTAAGACTATTGAAACAGTACAGTGACATCAAGACTCACCATGGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAGACTATTGAAACAGTACAGTGACATCAAGACTCACCATGGTGA  389

seq1  GATTGGAAGAAAGCTAATCAAAATTCAGGCACATTATAGCAGAGTTAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAAGAAAGCTAATCAAAATTCAGGCACATTATAGCAGAGTTAGAA  439

seq1  TGTTCTTAGTGATATTAATTTTCTTACTCCATTTTAACTAATATCTTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAGTGATATTAATTTTCTTACTCCATTTTAACTAATATCTTTAT  489

seq1  TTATTGTTTGAAAATTCCACACAAGTATACATTATCTCTTGTTCTTATCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTGAAAATTCCACACAAGTATACATTATCTCTTGTTCTTATCC  539

seq1  ATCAGCTTCTGGCCCATCCAACTCCCCTTGGTATCACCAACTCACTTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTCTGGCCCATCCAACTCCCCTTGGTATCACCAACTCACTTTCC  589

seq1  TCTGGAGTTCATTTCATTAAAAAAATGTAATCATTATTTATATCATTATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTTCATTTCATTAAAAAAATGTAATCATTATTTATATCATTATT  639

seq1  AATAGCCCACTGAGTCCAATTAGAGCTGACTACATGAGGATGAGTGTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCCACTGAGTCCAATTAGAGCTGACTACATGAGGATGAGTGTGAG  689

seq1  TTACCAACTGGGGCTTGAACAACCTACCTGCAGCCACATTCCTAGGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAACTGGGGCTTGAACAACCTACCTGCAGCCACATTCCTAGGAAAA  739

seq1  GGAACTCCTCCAGCTGCCGTCAACTGCCAACTGGTCTTGAGTTAGGTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCCTCCAGCTGCCGTCAACTGCCAACTGGTCTTGAGTTAGGTTGT  789

seq1  GGCTTTGGATTCCTACCTCCTCCCTGCAACTGGCTGGCCTCTGTGAGACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGATTCCTACCTCCTCCCTGCAACTGGCTGGCCTCTGTGAGACT  839

seq1  AGGCCTATTCAGGGCCATTCTGACACGGACGTTAAAGAGACCTGTTAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTATTCAGGGCCATTCTGACACGGACGTTAAAGAGACCTGTTAGAA  889

seq1  TTCAGCTCTCTTGTCTCCCTTAAACTTAGAAATTTCTGGGAAGGTTTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCTCTTGTCTCCCTTAAACTTAGAAATTTCTGGGAAGGTTTCAA  939

seq1  GCAGTTTTGCTTGGTTTTGAGTTGAAGACACACAGAGAAAGCTGCTTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTTGCTTGGTTTTGAGTTGAAGACACACAGAGAAAGCTGCTTTTA  989

seq1  GGTGGGATTGAAAAAGGGAGAGAGAAGAGAGGGAGAGAGGGTTACTGGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGATTGAAAAAGGGAGAGAGAAGAGAGGGAGAGAGGGTTACTGGGA  1039

seq1  TAAACCACTTATTTCAATTTTAAATGCTTTATTTAAATTCTTTATTAATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACTTATTTCAATTTTAAATGCTTTATTTAAATTCTTTATTAATC  1089

seq1  TCATAATATAGCAGCATCATTGGTATCTTATCAGATTATTTTCTGATTAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATATAGCAGCATCATTGGTATCTTATCAGATTATTTTCTGATTAG  1139

seq1  GATTTAATTTAAACATGGCAGCCTCACTGAATTC  1183
      ||||||||||||||||||||||||||||||||||
seq2  GATTTAATTTAAACATGGCAGCCTCACTGAATTC  1173

seq1: chr4_12620681_12621537
seq2: B6Ng01-134J07.g_346_1190

seq1  TGAAACTCAGTGACACAAGTCCTCTAGCAGACACACTTCCTAATCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCAGTGACACAAGTCCTCTAGCAGACACACTTCCTAATCTTTCT  50

seq1  CAAGTAGTGCTACTCCTTAATAACTGAACACTCAAATATATAAGCTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGTGCTACTCCTTAATAACTGAACACTCAAATATATAAGCTTATG  100

seq1  TGAGCCATTCCTACGCAAACCACCACAGTGACCATAACAGGTATACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATTCCTACGCAAACCACCACAGTGACCATAACAGGTATACAGAT  150

seq1  TCAGATTCCCCAACATAGTAAGTACATTTTAAGTACAATAGATCTTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCCCCAACATAGTAAGTACATTTTAAGTACAATAGATCTTATTA  200

seq1  GTTAAAGCAAGTCATCAATCAAAGTGTTTACTAATACATTGATGAGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGCAAGTCATCAATCAAAGTGTTTACTAATACATTGATGAGGGCC  250

seq1  ATAGGCAGGTGGGTGGCAGCACAGCAGGGGAAACTCTGCTATAAGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAGGTGGGTGGCAGCACAGCAGGGGAAACTCTGCTATAAGCTTCT  300

seq1  GACAATATCTGATGATATTAGCATTTGAATTGGTAAAACGTAGTAGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATATCTGATGATATTAGCATTTGAATTGGTAAAACGTAGTAGTATC  350

seq1  CTAAGAATATATTGTACGGTTTTTATAGTCACAAGAGTGTTAGATCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATATATTGTACGGTTTTTATAGTCACAAGAGTGTTAGATCAGAA  400

seq1  ATAAGTGGGTAATAGATAGCTTTTAAAAGAGCTAAAAATAGTCCAAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGGGTAATAGATAGCTTTTAAAAGAGCTAAAAATAGTCCAAGATA  450

seq1  ATTAGACTTCTGTAGCATTTTAAATATCAATAATCCTCAACTTCAATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACTTCTGTAGCATTTTAAATATCAATAATCCTCAACTTCAATCTC  500

seq1  TTTGGCCTTGTTGAATGTTTAACATTGTACAATGCTGCCTCCCCTGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCTTGTTGAATGTTTAACATTGTACAATGCTGCCTCCCCTGCCTT  550

seq1  TATTTCCTCCACATTCTGAGGATTTGAGCTCACAGCTTCTACTTTTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTCCACATTCTGAGGATTTGAGCTCACAGCTTCTACTTTTCCCC  600

seq1  TTCATTTTTAAAAATTTTGTTCAATACTGTTTGAGTTTGCTTTTAACTTC  650
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCATTTTTAAAAATTTTGTTC-ATACTGTTTGAGTTTGCTTTTAACTTC  649

seq1  TATTATCTAAAGCCAAGACCCTGTAAAAAGGGCTTTGTGTTCCCCATAAA  700
      |||||||||||||| ||||||||| |||||||||||||||| ||||||||
seq2  TATTATCTAAAGCC-AGACCCTGT-AAAAGGGCTTTGTGTT-CCCATAAA  696

seq1  CAAGAAGCCTTCACTTTCAGCTGCTCCAACCTCTGTTACACTGAGATATG  750
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAGAAGCCTTCACTTTCAGCTGCTCC-ACCTCTGTTACACTGAGATATG  745

seq1  ATTGAAGTGAAAAAAGAAACATTAACTTTTAATACATGAAGGACCACTCC  800
      ||   |||| ||||||||||||| || ||||||||||||  |||| | | 
seq2  AT--GAGTG-AAAAAGAAACATTTACCTTTAATACATGA--GACC-CCCT  789

seq1  AATATATTACCCATATAAGCTTAGAAAAGAGAAAAAAGTGTGACTG-TCC  849
       |||| || |||| || ||| |||||||| |||||||||||||||| |||
seq2  CATATTTTTCCCAAAT-AGCCTAGAAAAG-GAAAAAAGTGTGACTGTTCC  837

seq1  CAGTCTTG  857
      ||||||||
seq2  CAGTCTTG  845