BAC Information

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BAC

Clone NameB6Ng01-134N06
Chromosome11 (Build37)4 (Build37)
Map Location 3,663,777 - 3,664,847141,275,946 - 141,276,314
singlet/doubletsingletsinglet
Overlap geneOsbp2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900
Downstream geneLOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134N06.bB6Ng01-134N06.g
ACCDH935027DH935028
length1,064724
definitionDH935027|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N06, 5' end.DH935028|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,663,777 - 3,664,847)(141,275,946 - 141,276,314)
sequence
gaattcttttcacttatttattaatgacaatggtagtcagctcctatgta
tggttattcttagaacactgcttctttaaagcttcattcttaagatagct
gcacaggggctgtggccattacctatgggctaaccctcctctgtgcccgt
gcagaggacaaagggagctgtggggctgggtgcgtatcagaagtacaaac
ttgaaggcagcacagtggagagctggagatggcagaagggggttggtttg
atgggctcagacaggtggggttcatggtaggtgactaagccacttggagc
aaccaattaattgatctcatctctgagtcacccctgtgcccattcagtct
gtgaatacttattaggtcacaccagaagctgggaacaatgagggaaggcc
acacactctgtcctcagggacttcagtctgtgcaggaaaccggcagggaa
tgaagttccagtagggcacacaggacggaggagaagaaagaagcctggat
cccaagaaactggcccctgcgtctgctgctctaacaagcctgcttctgtg
tggcttccactccattacaaacatgttgtgtgagttgcttttcttccagc
gttttggtctttagtgtaagttttaacccgtgcagccattgcctaggtga
gtctacatggctctttggcatccatgaagctaataacacagacagccctc
tgcagctgggctcttaggttgaatctgtctttactgccagtggtgacagg
cacacagtgtcttgctttttcctctcctgctgaagcactgtatcttcaca
cgggctgcagggtggagacatgcctgtggctctcactgtactgcctgcca
cattgcaccttagagccctcacgttagcttctttttcctcttgcctctgg
cactaggatggacactggataattgtgcacatgtgtgacactcacacaca
tatgtacaggtgcacacactatttgtgcacatgaattttagtgtgtgtgc
gtgtgcgtgtgtgtgtgagcaccaatctcgagaaaagaggagcctggcga
atcaagcctggtta
gaattccagatattggacattgaattattaacactgttgaattttgtttt
tgctctgttcagattgtgactatattagttctttcctcttgtgatggttt
gtatatccttggaccagggagtggcaccatctgaaggtgtggccttgtta
gaataggtgtgacctggttggaatgggtgtgtcactgtgggtgtgggtat
aagattctcaccctagttgcctggaagtcagtcttccactagcagccttt
ggatgaagacgtagaattctcagctctgcctgcaccatgccagcctggat
actgccatgctcccaccttgatgataatggactgaacctctgaacctgta
agccagccccaattaaatgttgttttttataagacttgccttggtcatgg
tgtctgttcacagcagtaaaaccctaactaagacacctcttgaagtaagg
aaagtatttaccttaatgtaggtttgtataggagcccactgtggagactt
tgaacttttaaaagaacttttggatttttaaagagactggatattttgct
aggctgtggtagtgcacacctttaatcccagcactcaggaggcagaggca
ggtagatctctatgagtcagatggccaatctggtttacagagttagctcc
aggacaggctacacaaagaaaccctgttttgaaaaaaacaaaacaacaaa
aaaagagagtggacatttttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3663777_3664847
seq2: B6Ng01-134N06.b_44_1107 (reverse)

seq1  TAACCAGGCTCTGATTCCACCAGGCTCCTCTTTTCTC-AGACTAGTGCAC  49
      |||||||||| ||||| | |||||||||||||||||| ||| | |||   
seq2  TAACCAGGCT-TGATT-CGCCAGGCTCCTCTTTTCTCGAGATTGGTG---  45

seq1  ACACACACACACACACACACACACACACACTAAAATTCATGTGCACAAAT  99
       | ||||||||||| ||||| |||||||||||||||||||||||||||| 
seq2  -CTCACACACACACGCACACGCACACACACTAAAATTCATGTGCACAAA-  93

seq1  TAGTGTGTGCACCTGTACATATGTGTGTGAGTGTTCACACATGTGCACAA  149
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGTGTGTGCACCTGTACATATGTGTGTGAGTG-TCACACATGTGCACAA  142

seq1  TTATCCAGTGTCCATCCTAGTGCCAGAGGCAAGAGGAAAAAGAAGCTAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGTGTCCATCCTAGTGCCAGAGGCAAGAGGAAAAAGAAGCTAAC  192

seq1  GTGAGGGCTCTAAGGTGCAATGTGGCAGGCAGTACAGTGAGAGCCACAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGCTCTAAGGTGCAATGTGGCAGGCAGTACAGTGAGAGCCACAGG  242

seq1  CATGTCTCCACCCTGCAGCCCGTGTGAAGATACAGTGCTTCAGCAGGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCCACCCTGCAGCCCGTGTGAAGATACAGTGCTTCAGCAGGAGA  292

seq1  GGAAAAAGCAAGACACTGTGTGCCTGTCACCACTGGCAGTAAAGACAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGCAAGACACTGTGTGCCTGTCACCACTGGCAGTAAAGACAGAT  342

seq1  TCAACCTAAGAGCCCAGCTGCAGAGGGCTGTCTGTGTTATTAGCTTCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTAAGAGCCCAGCTGCAGAGGGCTGTCTGTGTTATTAGCTTCATG  392

seq1  GATGCCAAAGAGCCATGTAGACTCACCTAGGCAATGGCTGCACGGGTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAAAGAGCCATGTAGACTCACCTAGGCAATGGCTGCACGGGTTAA  442

seq1  AACTTACACTAAAGACCAAAACGCTGGAAGAAAAGCAACTCACACAACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACACTAAAGACCAAAACGCTGGAAGAAAAGCAACTCACACAACAT  492

seq1  GTTTGTAATGGAGTGGAAGCCACACAGAAGCAGGCTTGTTAGAGCAGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAATGGAGTGGAAGCCACACAGAAGCAGGCTTGTTAGAGCAGCAG  542

seq1  ACGCAGGGGCCAGTTTCTTGGGATCCAGGCTTCTTTCTTCTCCTCCGTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGGGGCCAGTTTCTTGGGATCCAGGCTTCTTTCTTCTCCTCCGTCC  592

seq1  TGTGTGCCCTACTGGAACTTCATTCCCTGCCGGTTTCCTGCACAGACTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCCTACTGGAACTTCATTCCCTGCCGGTTTCCTGCACAGACTGA  642

seq1  AGTCCCTGAGGACAGAGTGTGTGGCCTTCCCTCATTGTTCCCAGCTTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGAGGACAGAGTGTGTGGCCTTCCCTCATTGTTCCCAGCTTCTG  692

seq1  GTGTGACCTAATAAGTATTCACAGACTGAATGGGCACAGGGGTGACTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACCTAATAAGTATTCACAGACTGAATGGGCACAGGGGTGACTCAG  742

seq1  AGATGAGATCAATTAATTGGTTGCTCCAAGTGGCTTAGTCACCTACCATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGATCAATTAATTGGTTGCTCCAAGTGGCTTAGTCACCTACCATG  792

seq1  AACCCCACCTGTCTGAGCCCATCAAACCAACCCCCTTCTGCCATCTCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACCTGTCTGAGCCCATCAAACCAACCCCCTTCTGCCATCTCCAG  842

seq1  CTCTCCACTGTGCTGCCTTCAAGTTTGTACTTCTGATACGCACCCAGCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACTGTGCTGCCTTCAAGTTTGTACTTCTGATACGCACCCAGCCC  892

seq1  CACAGCTCCCTTTGTCCTCTGCACGGGCACAGAGGAGGGTTAGCCCATAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCCCTTTGTCCTCTGCACGGGCACAGAGGAGGGTTAGCCCATAG  942

seq1  GTAATGGCCACAGCCCCTGTGCAGCTATCTTAAGAATGAAGCTTTAAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGCCACAGCCCCTGTGCAGCTATCTTAAGAATGAAGCTTTAAAGA  992

seq1  AGCAGTGTTCTAAGAATAACCATACATAGGAGCTGACTACCATTGTCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTTCTAAGAATAACCATACATAGGAGCTGACTACCATTGTCATT  1042

seq1  AATAAATAAGTGAAAAGAATTC  1071
      ||||||||||||||||||||||
seq2  AATAAATAAGTGAAAAGAATTC  1064

seq1: chr4_141275946_141276314
seq2: B6Ng01-134N06.g_624_792 (reverse)

seq1  TTTGAAAAATGTCCACTTATTTCTGTGTACTTTACCTGCATGTCTATACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGGTGCCCACAGAGGCCACAAGAGGGCATTGAATCCTGTGGAACTAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTTACTGATGGTTGTGAGCCACTGTATGGGTGCTGGGAATCAAACCTCTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAAGACGCCTCTATAAAAGCAGCAAGTGCTCTTAATGGTTATCTGTCTCT  200
                                   | | ||     |  |||    
seq2  -----------------------------TTTGAA-----AAATGT----  12

seq1  CGAACCCCATTTTCATTCATTCTAGTTCATCCTCCTCCCAAGCCCCCCAG  250
            ||| | || ||  || | |||     |  | | ||     |  |
seq2  ------CCACTCTCTTTTTTTGTTGTTTTGTTTTTTTCAAA----ACAGG  52

seq1  GTTTCTCTGTGTATCCCTGGCTGTCTAGGCACTTGACCTGTAGACCAGGC  300
      |||||| ||||||     | |||||  ||  ||    ||||| |||||  
seq2  GTTTCTTTGTGTA-----GCCTGTCCTGGAGCTAACTCTGTAAACCAGAT  97

seq1  TCACC-TTGAACTC--AGAGATCTACTGGCCTCTGCCTCCTGAGTTCTGG  347
      |  || |   ||||  ||||||||||  ||||||||||||||||| ||||
seq2  TGGCCATCTGACTCATAGAGATCTACCTGCCTCTGCCTCCTGAGTGCTGG  147

seq1  GATTAAAGATGTGCACCACCAC  369
      |||||||| ||||||| |||||
seq2  GATTAAAGGTGTGCACTACCAC  169