BAC Information

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BAC

Clone NameB6Ng01-136M11
Chromosome4 (Build37)
Map Location 55,734,061 - 55,839,633
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136M11.bB6Ng01-136M11.g
ACCDH936462DH936463
length1,116854
definitionDH936462|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M11, 5' end.DH936463|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,838,514 - 55,839,633)(55,734,061 - 55,734,888)
sequence
gaattcttgaactaagatttcctcttctaagaggagttcaattgtattaa
gttgaccaaaacctctcaataacaaaataaacaccagtaactagtatatg
aaggaacgcagcattcgtggatgctaaggctttttggtgatgcatgagac
tacctgtgagttacatatgcatctgaaagtccccactacccacacacctc
actataaataaactcactgatatctctggagcagcagcagtgtcaacagt
ggagagagtgagttccagaggccaggaggaaacctcactgatggcaaacc
agcagcaaccctatctgaaggagccagttttttgcctcaaccagtaagaa
acatgttttctgcagagatctcaagccaccccttcaggacccagagtgcc
agcaccaccaaaaggactgatttctagacccagaactattttataaatac
tttctttttgtgcacagattaatctctttttcttttcaaacattcattga
ctattgataatttcattgcattgtctcttttccctggagagtccagtctt
tgatcatgttaatgagggctatcaactcgtgactatgaagtctcctttta
gatgttcacatatctttccctagttctctgtgtagaatagcatagcacta
cactttcctggggaattgtttctgtccagctcccggggagacatttcggt
aggatgctggctcccagtttggtcatgagactgacactcccagtgggatc
tccttagagtaagactagtatctttccaatgagtcttagccttccacaag
ccaagaggaggatgggacaatgatggaaagaatattatgcagcaaactgc
ctcaataccatcagcaccctccccaacctgataagtgagtcttcttagat
aatatttcatcaatgaaaagaaagttttattcagctgagatacatcattt
ccagaactaggggtagggaagcaggttggccttctagatcagagcaggag
tataagtcagcctgagaagatgagtccaaggaatggactgggatcttcca
ccaagttctggctcttattaggattctttcttggcctgataaggtggagt
cttttcacttgagagt
gaattcaattgagctcataagaagtgatagaacttcctgaacagtcctgt
aaacaaggtggggctaggggctctgagcatcaaaaagctctttgtaggct
cttcggagaacacccaagcaagctacacatcgtcgggtcaacgaaaacca
agctttgtgagaaggaagatcctgggagaaaatggtttgaatatccactt
caagtcagtggacatcaggttaaactgctgttggtgcaagctgcagaggc
acagggggatagggaaacacacgggatctggggtggggctggggcattta
tttacagcagatttcagatcgtgaataggtgttttctggtcagtgaagag
aggaaagcagtaatatatgccatcatgtttaaaagcttttcagtaggttc
agcatgactgtggccattgggaggagtggatagcaataagactctagaga
gccctagacagactagcaggtgtaggagccgacaagccagggccgtagcc
ttatactgaggagggctctgaccaagaggagatgcttttcctgtcccaag
ttgacttgaacccagaccctatgcccttctatttcctgtttcgtccctga
ttagcataagcaagtgactctctaatttgggaactgttccaagagcacac
aatgctaaaaccccaacagaaagctgggaatttcaaaaagaggcatgccc
aggcagggacccagctcctgagggatgggtggacaggaggagggttgaca
ggaagccagctcagacctctctttaagctgcttctcctctggggggaatt
ggggtgtgtgtgtcttgtacaatattcgtccccaaagtgaatctgggctg
ggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_55838514_55839633
seq2: B6Ng01-136M11.b_47_1162 (reverse)

seq1  ACTCTC-AGTG-AAAGACTCAACCTTTATCAGGCTCAAGAAAGAATCCTA  48
      |||||| |||| |||||||| ||| ||||||||| |||||||||||||||
seq2  ACTCTCAAGTGAAAAGACTCCACC-TTATCAGGC-CAAGAAAGAATCCTA  48

seq1  ATGAGAGCCAGAACTTGGTGGAAGAATCCCAAGTTCAATTCACTGTGACT  98
      || ||||||||||||||||||||| ||||||   || |||| ||  ||||
seq2  ATAAGAGCCAGAACTTGGTGGAAG-ATCCCA--GTCCATTC-CTTGGACT  94

seq1  CATCTTCTCAGGCTGACTTATACTCCTGCTCTGATCTAGAAGGCCAACCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTCAGGCTGACTTATACTCCTGCTCTGATCTAGAAGGCCAACCT  144

seq1  GCTTCCCTACCCCTAGTTCTGGAAATGATGTATCTCAGCTGAATAAAACT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTACCCCTAGTTCTGGAAATGATGTATCTCAGCTGAATAAAACT  194

seq1  TTCTTTTCATTGATGAAATATTATCTAAGAAGACTCACTTATCAGGTTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCATTGATGAAATATTATCTAAGAAGACTCACTTATCAGGTTGG  244

seq1  GGAGGGTGCTGATGGTATTGAGGCAGTTTGCTGCATAATATTCTTTCCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTGCTGATGGTATTGAGGCAGTTTGCTGCATAATATTCTTTCCAT  294

seq1  CATTGTCCCATCCTCCTCTTGGCTTGTGGAAGGCTAAGACTCATTGGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCCATCCTCCTCTTGGCTTGTGGAAGGCTAAGACTCATTGGAAA  344

seq1  GATACTAGTCTTACTCTAAGGAGATCCCACTGGGAGTGTCAGTCTCATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAGTCTTACTCTAAGGAGATCCCACTGGGAGTGTCAGTCTCATGA  394

seq1  CCAAACTGGGAGCCAGCATCCTACCGAAATGTCTCCCCGGGAGCTGGACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGGGAGCCAGCATCCTACCGAAATGTCTCCCCGGGAGCTGGACA  444

seq1  GAAACAATTCCCCAGGAAAGTGTAGTGCTATGCTATTCTACACAGAGAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATTCCCCAGGAAAGTGTAGTGCTATGCTATTCTACACAGAGAAC  494

seq1  TAGGGAAAGATATGTGAACATCTAAAAGGAGACTTCATAGTCACGAGTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAGATATGTGAACATCTAAAAGGAGACTTCATAGTCACGAGTTG  544

seq1  ATAGCCCTCATTAACATGATCAAAGACTGGACTCTCCAGGGAAAAGAGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTCATTAACATGATCAAAGACTGGACTCTCCAGGGAAAAGAGAC  594

seq1  AATGCAATGAAATTATCAATAGTCAATGAATGTTTGAAAAGAAAAAGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATGAAATTATCAATAGTCAATGAATGTTTGAAAAGAAAAAGAGA  644

seq1  TTAATCTGTGCACAAAAAGAAAGTATTTATAAAATAGTTCTGGGTCTAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTGTGCACAAAAAGAAAGTATTTATAAAATAGTTCTGGGTCTAGA  694

seq1  AATCAGTCCTTTTGGTGGTGCTGGCACTCTGGGTCCTGAAGGGGTGGCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCCTTTTGGTGGTGCTGGCACTCTGGGTCCTGAAGGGGTGGCTT  744

seq1  GAGATCTCTGCAGAAAACATGTTTCTTACTGGTTGAGGCAAAAAACTGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTCTGCAGAAAACATGTTTCTTACTGGTTGAGGCAAAAAACTGGC  794

seq1  TCCTTCAGATAGGGTTGCTGCTGGTTTGCCATCAGTGAGGTTTCCTCCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGATAGGGTTGCTGCTGGTTTGCCATCAGTGAGGTTTCCTCCTG  844

seq1  GCCTCTGGAACTCACTCTCTCCACTGTTGACACTGCTGCTGCTCCAGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGAACTCACTCTCTCCACTGTTGACACTGCTGCTGCTCCAGAGA  894

seq1  TATCAGTGAGTTTATTTATAGTGAGGTGTGTGGGTAGTGGGGACTTTCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGAGTTTATTTATAGTGAGGTGTGTGGGTAGTGGGGACTTTCAG  944

seq1  ATGCATATGTAACTCACAGGTAGTCTCATGCATCACCAAAAAGCCTTAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATGTAACTCACAGGTAGTCTCATGCATCACCAAAAAGCCTTAGC  994

seq1  ATCCACGAATGCTGCGTTCCTTCATATACTAGTTACTGGTGTTTATTTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACGAATGCTGCGTTCCTTCATATACTAGTTACTGGTGTTTATTTTG  1044

seq1  TTATTGAGAGGTTTTGGTCAACTTAATACAATTGAACTCCTCTTAGAAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGAGGTTTTGGTCAACTTAATACAATTGAACTCCTCTTAGAAGA  1094

seq1  GGAAATCTTAGTTCAAGAATTC  1120
      ||||||||||||||||||||||
seq2  GGAAATCTTAGTTCAAGAATTC  1116

seq1: chr4_55734061_55734888
seq2: B6Ng01-136M11.g_69_894

seq1  GAATTCAATTGAGCTCATAAGAAGTGATAGAACTTCCTGAACAGTCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGAGCTCATAAGAAGTGATAGAACTTCCTGAACAGTCCTGT  50

seq1  AAACAAGGTGGGGCTAGGGGCTCTGAGCATCAAAAAGCTCTTTGTAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGTGGGGCTAGGGGCTCTGAGCATCAAAAAGCTCTTTGTAGGCT  100

seq1  CTTCGGAGAACACCCAAGCAAGCTACACATCGTCGGGTCAACGAAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGAGAACACCCAAGCAAGCTACACATCGTCGGGTCAACGAAAACCA  150

seq1  AGCTTTGTGAGAAGGAAGATCCTGGGAGAAAATGGTTTGAATATCCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTGAGAAGGAAGATCCTGGGAGAAAATGGTTTGAATATCCACTT  200

seq1  CAAGTCAGTGGACATCAGGTTAAACTGCTGTTGGTGCAAGCTGCAGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGTGGACATCAGGTTAAACTGCTGTTGGTGCAAGCTGCAGAGGC  250

seq1  ACAGGGGGATAGGGAAACACACGGGATCTGGGGTGGGGCTGGGGCATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGGATAGGGAAACACACGGGATCTGGGGTGGGGCTGGGGCATTTA  300

seq1  TTTACAGCAGATTTCAGATCGTGAATAGGTGTTTTCTGGTCAGTGAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCAGATTTCAGATCGTGAATAGGTGTTTTCTGGTCAGTGAAGAG  350

seq1  AGGAAAGCAGTAATATATGCCATCATGTTTAAAAGCTTTTCAGTAGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCAGTAATATATGCCATCATGTTTAAAAGCTTTTCAGTAGGTTC  400

seq1  AGCATGACTGTGGCCATTGGGAGGAGTGGATAGCAATAAGACTCTAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGACTGTGGCCATTGGGAGGAGTGGATAGCAATAAGACTCTAGAGA  450

seq1  GCCCTAGACAGACTAGCAGGTGTAGGAGCCGACAAGCCAGGGCCGTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGACAGACTAGCAGGTGTAGGAGCCGACAAGCCAGGGCCGTAGCC  500

seq1  TTATACTGAGGAGGGCTCTGACCAAGAGGAGATGCTTTTCCTGTCCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTGAGGAGGGCTCTGACCAAGAGGAGATGCTTTTCCTGTCCCAAG  550

seq1  TTGACTTGAACCCAGACCCTATGCCCTTCTATTTCCTGTTTCGTCCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGAACCCAGACCCTATGCCCTTCTATTTCCTGTTTCGTCCCTGA  600

seq1  TTAGCATAAGCAAGTGACTCTCTAATTTGGGAACTGTTCCAAGAGCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATAAGCAAGTGACTCTCTAATTTGGGAACTGTTCCAAGAGCACAC  650

seq1  AATGCTAAAACCCCAACAGAAAGCTGGGAATTTCAAAAAGAGGCATGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAAAACCCCAACAGAAAGCTGGGAATTTCAAAAAGAGGCATGCCC  700

seq1  AGGCAGGGACCCAGCTCCTGAGGGATGGGTGGACAGGAGGAGGGTTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGACCCAGCTCCTGAGGGATGGGTGGACAGGAGGAGGGTTGACA  750

seq1  GGAAGCCAGCTCAGACCTCTCTTTAAGCTGCTTCTCCTCTGGGGGGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAGCTCAGACCTCTCTTTAAGCTGCTTCTCCTCTGGGGGGAATT  800

seq1  GGGGTGTGTGTGTCTTGTAGCAAATATT  828
      |||||||||||||||||||   ||||||
seq2  GGGGTGTGTGTGTCTTGTA--CAATATT  826