BAC Information

Click to search

BAC

Clone NameB6Ng01-138A12
Chromosome4 (Build37)
Map Location 35,222,953 - 35,358,226
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559
Downstream geneLOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138A12.bB6Ng01-138A12.g
ACCDH937396DH937397
length1,2631,133
definitionDH937396|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A12, 5' end.DH937397|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,356,948 - 35,358,226)(35,222,953 - 35,224,091)
sequence
gaattccagaaccttttataaaaacaaacattttatagcaaagtctacag
atgaaacaatggaacagtcattaaaacctgtgctataagaaaactagatg
atcaccgttgacccttctctaatagtgcaaataaagttacagatacaaaa
tgaactcagttttacttcttaaacttcagtaaacgggtgggaagtaacct
aaaatgctaccatggtaggatgatgaataattgtccatctttctcattaa
tcatatttacactgtcattttttcgaaaaagaaagaaaacgatgaagaag
tttaaaaggacttgataaaaaataagagaagctgaaggaatttttaagaa
aattgtatgtggagaccttgctactgtgagtagaattgctcagtaagtca
ggggaaagaaaaatctggttgctacaccactgcaaagccctaaagaccaa
agctctctcagcccatcaatttcatattgatttcatcttgacatgtaaca
tgccccttagttctacaagaaaagaaatcatgaaatatcaatggtgactt
ccagaggacatatatacacgtgttgattgaagattaatttctcaacagga
tggctcattgtcaatatccttgccttttgtgtggtgtgggtcatgtgacc
ttaatgattattaaaggaacccgttttgagttggctcaagtttctagaga
atgtgagttattgagaattaaaggcaaagaaaagtctgtgacttgactgt
atattttattatggaaaattccaagaaaagagattacttgttcatttgaa
aagcaactgaaagcttctaattgtatggcccttgaggagaactaatttgt
agtttaatgataaacttgtccagtgatggttttactactgtgttggcttg
aactctgttcatgacgtatctgcttccattaccagccccctccgtttctt
ttctttcttacataatttcccagcaaaacattaaatagtacatacataat
ctttggggaataataagattattttaacccatagttctcagagtccatat
gagacaattaacagctcaagcagaagttgttacctctgattaaatcagtc
acagcacaacaggagaacagcagcatgatgaagctattttttgatcagct
tattaaaagattctttaatccgagatatgtagctcctacatggagacttc
ttcagccagatgcacctcattttctactacatattcttccatccagttct
atatgaattctgt
gaattcttcctctattggaaagtggtgtacaagtagaagtacaagtagat
tagtcagagatttctttcatttgtttgtttgcttacctaaataagccact
ggggggaatagtttgacaaacttccccttcaaactatattcaatttcctt
gttgctcactatcagtaataaatagacaaatgaggatgttttcactctgg
cacactttatttcctctagccatcttctgctggaggtgtgaaaagctaag
ttgtgtgtagctgaaggaaaaggtggaaatgcaacaaggggccccattcg
cagaaggagccatatgtcaaaggctccatgatgctgagaacacagacaca
aggcagccatttattgctgttattatttcccagaatgtgcaaatttaaaa
acagcagggtctcactgctccatctctgcctatctcccagcccctgcctg
agaaggctagactgattccatgacaggcttcaaattggcagttcaggaga
ctatacctaagaactgggcaagtccaggcaagctcaggtaagccagttac
tagaaaaactccaggcttcaggcagctagtcagaaactgccctgccacaa
cacctggcctgaggcaaggacaatgggtcagtagcagtttccagactccc
tcaacaatagtttccagacttctccagcaacagtttccagcccccatgca
atggttctggtaaaatgcatattacgatagagatcacctaccttggaatt
tccctaatgtgctttaaatcagtgcctgcaagctcacttcaaaagtctct
ctatcttggtaatgtcagcatgctggacatctgtagaatataacactctt
tgcgttcatatactacttgagtctggggtttattctttgatgaatcatgg
gactctaatcatgcccttctctcttttctacaaactaagccttcctgatt
cctgtgtacagcatttcttagccaagccagcaggacacccagcttcacta
tgctctgatgtctggatcatatctctcatctgctttgctgagggctgaaa
tgaggctgttctagatcttgcattctagtatactttagagaccaggcatg
cctcctttgttaggaatgcggggaagtgacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35356948_35358226
seq2: B6Ng01-138A12.b_34_1296 (reverse)

seq1  ACAGAAATCTATAT-GAACTGGAT-GAAGAAATAGTAGTTAGAAAGTGAG  48
      |||||| || |||| ||||||||| ||||||   |||| |||||| ||||
seq2  ACAGAATTC-ATATAGAACTGGATGGAAGAATATGTAG-TAGAAAATGAG  48

seq1  GTGGCTATACCTGCCTGAAGAAGTCTTCCATGGTAGGGGCTACATATTCT  98
      |||     | ||| ||||||||||| ||||| ||||| |||||||||   
seq2  GTG----CATCTGGCTGAAGAAGTC-TCCAT-GTAGGAGCTACATATCTC  92

seq1  GGATTAAGAAACCCTTTTAATTAAGCTGATCAAAAAATAGCTTCATCATG  148
      ||||||| | |  ||||||| |||||||||||||||||||||||||||||
seq2  GGATTAA-AGAATCTTTTAA-TAAGCTGATCAAAAAATAGCTTCATCATG  140

seq1  CTGCTGTTCTCCTTGTTGTTGCTGTGACTGAATTTAATCAGA-GTTACAA  197
      |||||||||||| ||||| ||||||||||| ||||||||||| || ||||
seq2  CTGCTGTTCTCC-TGTTG-TGCTGTGACTG-ATTTAATCAGAGGTAACAA  187

seq1  CTTCTGCTTTGAGCTGTTTATGTGTCTCATATGGACTTCTGAGAACTATT  247
      ||||||| |||||||||| || |||||||||||||| |||||||||||| 
seq2  CTTCTGC-TTGAGCTGTTAAT-TGTCTCATATGGAC-TCTGAGAACTATG  234

seq1  GGGTTAAATAATCTTATTTATTTCCCCAAAGATTATGTATGTACTATTTA  297
      || | |||||||||||||   |||||||||||||||||||||||||||||
seq2  GGTTAAAATAATCTTATT--ATTCCCCAAAGATTATGTATGTACTATTTA  282

seq1  ATGTTTTGCTGGGAAATTATGTAAGGAAGAAAAGAAAACGGAGGGGGCTG  347
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  ATGTTTTGCTGGGAAATTATGTAAGAAAGAAAAG-AAACGGAGGGGGCTG  331

seq1  GTAATGGAAGCAGATACGTCATGAACAGAGTTCAAGCCAACACAGTAGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGAAGCAGATACGTCATGAACAGAGTTCAAGCCAACACAGTAGTA  381

seq1  AAACCATCACTGGACAAGTTTATCATTAAACTACAAATTAGTTCTCCTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCACTGGACAAGTTTATCATTAAACTACAAATTAGTTCTCCTCA  431

seq1  AGGGCCATACAATTAGAAGCTTTCAGTTGCTTTTCAAATGAACAAGTAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATACAATTAGAAGCTTTCAGTTGCTTTTCAAATGAACAAGTAAT  481

seq1  CTCTTTTCTTGGAATTTTCCATAATAAAATATACAGTCAAGTCACAGACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTTGGAATTTTCCATAATAAAATATACAGTCAAGTCACAGACT  531

seq1  TTTCTTTGCCTTTAATTCTCAATAACTCACATTCTCTAGAAACTTGAGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGCCTTTAATTCTCAATAACTCACATTCTCTAGAAACTTGAGCC  581

seq1  AACTCAAAACGGGTTCCTTTAATAATCATTAAGGTCACATGACCCACACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAAACGGGTTCCTTTAATAATCATTAAGGTCACATGACCCACACC  631

seq1  ACACAAAAGGCAAGGATATTGACAATGAGCCATCCTGTTGAGAAATTAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAGGCAAGGATATTGACAATGAGCCATCCTGTTGAGAAATTAAT  681

seq1  CTTCAATCAACACGTGTATATATGTCCTCTGGAAGTCACCATTGATATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATCAACACGTGTATATATGTCCTCTGGAAGTCACCATTGATATTT  731

seq1  CATGATTTCTTTTCTTGTAGAACTAAGGGGCATGTTACATGTCAAGATGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTCTTTTCTTGTAGAACTAAGGGGCATGTTACATGTCAAGATGA  781

seq1  AATCAATATGAAATTGATGGGCTGAGAGAGCTTTGGTCTTTAGGGCTTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATATGAAATTGATGGGCTGAGAGAGCTTTGGTCTTTAGGGCTTTG  831

seq1  CAGTGGTGTAGCAACCAGATTTTTCTTTCCCCTGACTTACTGAGCAATTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGTAGCAACCAGATTTTTCTTTCCCCTGACTTACTGAGCAATTC  881

seq1  TACTCACAGTAGCAAGGTCTCCACATACAATTTTCTTAAAAATTCCTTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACAGTAGCAAGGTCTCCACATACAATTTTCTTAAAAATTCCTTCA  931

seq1  GCTTCTCTTATTTTTTATCAAGTCCTTTTAAACTTCTTCATCGTTTTCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTTATTTTTTATCAAGTCCTTTTAAACTTCTTCATCGTTTTCTT  981

seq1  TCTTTTTCGAAAAAATGACAGTGTAAATATGATTAATGAGAAAGATGGAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCGAAAAAATGACAGTGTAAATATGATTAATGAGAAAGATGGAC  1031

seq1  AATTATTCATCATCCTACCATGGTAGCATTTTAGGTTACTTCCCACCCGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCATCATCCTACCATGGTAGCATTTTAGGTTACTTCCCACCCGT  1081

seq1  TTACTGAAGTTTAAGAAGTAAAACTGAGTTCATTTTGTATCTGTAACTTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAGTTTAAGAAGTAAAACTGAGTTCATTTTGTATCTGTAACTTT  1131

seq1  ATTTGCACTATTAGAGAAGGGTCAACGGTGATCATCTAGTTTTCTTATAG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCACTATTAGAGAAGGGTCAACGGTGATCATCTAGTTTTCTTATAG  1181

seq1  CACAGGTTTTAATGACTGTTCCATTGTTTCATCTGTAGACTTTGCTATAA  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTTTAATGACTGTTCCATTGTTTCATCTGTAGACTTTGCTATAA  1231

seq1  AATGTTTGTTTTTATAAAAGGTTCTGGAATTC  1279
      ||||||||||||||||||||||||||||||||
seq2  AATGTTTGTTTTTATAAAAGGTTCTGGAATTC  1263

seq1: chr4_35222953_35224091
seq2: B6Ng01-138A12.g_69_1201

seq1  GAATTCTTCCTCTATTGGAAAGTGGTGTACAAGTAGAAGTACAAGTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTCTATTGGAAAGTGGTGTACAAGTAGAAGTACAAGTAGAT  50

seq1  TAGTCAGAGATTTCTTTCATTTGTTTGTTTGCTTACCTAAATAAGCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGAGATTTCTTTCATTTGTTTGTTTGCTTACCTAAATAAGCCACT  100

seq1  GGGGGGAATAGTTTGACAAACTTCCCCTTCAAACTATATTCAATTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAATAGTTTGACAAACTTCCCCTTCAAACTATATTCAATTTCCTT  150

seq1  GTTGCTCACTATCAGTAATAAATAGACAAATGAGGATGTTTTCACTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCACTATCAGTAATAAATAGACAAATGAGGATGTTTTCACTCTGG  200

seq1  CACACTTTATTTCCTCTAGCCATCTTCTGCTGGAGGTGTGAAAAGCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTATTTCCTCTAGCCATCTTCTGCTGGAGGTGTGAAAAGCTAAG  250

seq1  TTGTGTGTAGCTGAAGGAAAAGGTGGAAATGCAACAAGGGGCCCCATTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTAGCTGAAGGAAAAGGTGGAAATGCAACAAGGGGCCCCATTCG  300

seq1  CAGAAGGAGCCATATGTCAAAGGCTCCATGATGCTGAGAACACAGACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAGCCATATGTCAAAGGCTCCATGATGCTGAGAACACAGACACA  350

seq1  AGGCAGCCATTTATTGCTGTTATTATTTCCCAGAATGTGCAAATTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCATTTATTGCTGTTATTATTTCCCAGAATGTGCAAATTTAAAA  400

seq1  ACAGCAGGGTCTCACTGCTCCATCTCTGCCTATCTCCCAGCCCCTGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGGTCTCACTGCTCCATCTCTGCCTATCTCCCAGCCCCTGCCTG  450

seq1  AGAAGGCTAGACTGATTCCATGACAGGCTTCAAATTGGCAGTTCAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTAGACTGATTCCATGACAGGCTTCAAATTGGCAGTTCAGGAGA  500

seq1  CTATACCTAAGAACTGGGCAAGTCCAGGCAAGCTCAGGTAAGCCAGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCTAAGAACTGGGCAAGTCCAGGCAAGCTCAGGTAAGCCAGTTAC  550

seq1  TAGAAAAACTCCAGGCTTCAGGCAGCTAGTCAGAAACTGCCCTGCCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAACTCCAGGCTTCAGGCAGCTAGTCAGAAACTGCCCTGCCACAA  600

seq1  CACCTGGCCTGAGGCAAGGACAATGGGTCAGTAGCAGTTTCCAGACTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCCTGAGGCAAGGACAATGGGTCAGTAGCAGTTTCCAGACTCCC  650

seq1  TCAACAATAGTTTCCAGACTTCTCCAGCAACAGTTTCCAGCCCCCATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATAGTTTCCAGACTTCTCCAGCAACAGTTTCCAGCCCCCATGCA  700

seq1  ATGGTTCTGGTAAAATGCATATTACGATAGAGATCACCTACCTTGGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTGGTAAAATGCATATTACGATAGAGATCACCTACCTTGGAATT  750

seq1  TCCCTAATGTGCTTTAAATCAG-GCCTGCAAGCTCACTTCAAAAGTCTCT  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCCTAATGTGCTTTAAATCAGTGCCTGCAAGCTCACTTCAAAAGTCTCT  800

seq1  CTATCTTGGTAATGTCAGCATGCTGGACATCTGTAGAATATAACACTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGGTAATGTCAGCATGCTGGACATCTGTAGAATATAACACTCTT  850

seq1  TGCGTTCATATACTACTTGAGTCTGGGGTTTTATTCTTTGATGAATCAT-  898
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  TGCGTTCATATACTACTTGAGTCTGGGG-TTTATTCTTTGATGAATCATG  899

seq1  GGACTCTAATCATGCCCTTCTCTCTTTTCTACAAACTAAGCCTTCCTGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTAATCATGCCCTTCTCTCTTTTCTACAAACTAAGCCTTCCTGAT  949

seq1  TCCTGTGTACAGGCAATTCCTAAGCCAAGCCAGCAGGGACACCCAGCTTC  998
      ||||||||||||   ||| || ||||||||||||| ||||||||||||||
seq2  TCCTGTGTACAG--CATTTCTTAGCCAAGCCAGCA-GGACACCCAGCTTC  996

seq1  ACTATGCTCTGATGTCTGGATCATATCTCTCATCCTGCTTTGCTGAAGGG  1048
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  ACTATGCTCTGATGTCTGGATCATATCTCTCAT-CTGCTTTGCTG-AGGG  1044

seq1  CTGAGATGAGGCTG-TCTAGAATCCTGCCATTCTAAGTATACCTTAGAGA  1097
      |||| ||||||||| ||||| ||| || |||||| ||||||| |||||||
seq2  CTGAAATGAGGCTGTTCTAG-ATCTTG-CATTCT-AGTATACTTTAGAGA  1091

seq1  CCAGGCATTGCTCTCTTGTTAGGAATGCGTGGAAGTGACCTT  1139
      ||||||||  |||  |||||||||||||| ||||||||||||
seq2  CCAGGCATGCCTCCTTTGTTAGGAATGCGGGGAAGTGACCTT  1133